Dr David Wood

Postdoctoral Research Fellow

School of Chemistry and Molecular Biosciences
Faculty of Science
d.wood3@uq.edu.au
+61 7 336 54957

Overview

Qualifications

  • Doctor of Philosophy, The University of Queensland
  • Bachelor of Science (Hons), Australian National University

Publications

  • Chotirmall, Sanjay H., Gellatly, Shaan L., Budden, Kurtis F., Mac Aogain, Micheál, Shukla, Shakti D., Wood, David L. A., Hugenholtz, Philip, Pethe, Kevin and Hansbro, Philip M. (2017) Microbiomes in respiratory health and disease: an Asia-Pacific perspective. Respirology, 22 2: 240-250. doi:10.1111/resp.12971

  • Budden, Kurtis, Gellatly, Shaan, Wood, David, Morrison, Mark, Cooper, Matthew, Dennis, Paul G., Hugenholtz, Philip and Hansbro, Philip (2017). Dietary fibre and microbial metabolites protect against cigarette smoke-induced lung pathology in mice. In: 22nd Congress of the Asian Pacific Society of Respirology, Sydney, Australia, (4-5). 23–26 November 2017.

  • Budden, Kurtis F. , Gellatly, Shaan L. , Wood, David L., Cooper, Matthew A. , Morrison, Mark, Hugenholtz, Philip and Hansbro, Philip M. (2016) Emerging pathogenic links between microbiota and the gut-lung axis.. Nature Reviews Microbiology, 15 1: 55-63. doi:10.1038/nrmicro.2016.142

View all Publications

Publications

Book Chapter

  • Krishnan, Keerthana, Wood, David L. A., Steen, Jason A., Grimmond, Sean M. and Cloonan, Nicole (2012). Tag sequencing. In Robert A. Meyers (Ed.), Epigenetic regulation and epigenomics (pp. 145-164) Weinheim, Germany: Wiley-Blackwell.

Journal Article

  • Chotirmall, Sanjay H., Gellatly, Shaan L., Budden, Kurtis F., Mac Aogain, Micheál, Shukla, Shakti D., Wood, David L. A., Hugenholtz, Philip, Pethe, Kevin and Hansbro, Philip M. (2017) Microbiomes in respiratory health and disease: an Asia-Pacific perspective. Respirology, 22 2: 240-250. doi:10.1111/resp.12971

  • Budden, Kurtis F. , Gellatly, Shaan L. , Wood, David L., Cooper, Matthew A. , Morrison, Mark, Hugenholtz, Philip and Hansbro, Philip M. (2016) Emerging pathogenic links between microbiota and the gut-lung axis.. Nature Reviews Microbiology, 15 1: 55-63. doi:10.1038/nrmicro.2016.142

  • Ormerod, Kate L., Wood, David L. A., Lachner, Nancy, Gellatly, Shaan L., Daly, Joshua N., Parsons, Jeremy D., Dal’Molin, Cristiana G. O., Palfreyman, Robin W., Nielsen, Lars K., Cooper, Matthew A., Morrison, Mark, Hansbro, Philip M. and Hugenholtz, Philip (2016) Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals. Microbiome, 4 36.1-36.17. doi:10.1186/s40168-016-0181-2

  • An, Jiyuan, Lai, John, Wood, David L. A., Sajjanhar, Atul, Wang, Chenwei, Tevz, George, Lehman, Melanie L. and Nelson, Colleen C. (2015) RNASeqBrowser: A genome browser for simultaneous visualization of raw strand specific RNAseq reads and UCSC genome browser custom tracks. BMC Genomics, 16 1: 1-9. doi:10.1186/s12864-015-1346-2

  • Clancy, Jennifer L., Patel, Hardip R., Hussein, Samer M. I., Tonge, Peter D., Cloonan, Nicole, Corso, Andrew J., Li, Mira, Lee, Dong-Sung, Shin, Jong-Yeon, Wong, Justin J. L., Bailey, Charles G., Benevento, Marco, Munoz, Javier, Chuah, Aaron, Wood, David, Rasko, John E. J., Heck, Albert J. R., Grimmond, Sean M., Rogers, Ian M., Seo, Jeong-Sun, Wells, Christine A., Puri, Mira C., Nagy, Andras and Preiss, Thomas (2014) Small RNA changes en route to distinct cellular states of induced pluripotency. Nature Communications, 5 5522: 1-9. doi:10.1038/ncomms6522

  • Lee, Dong-Sung, Shin, Jong-Yeon, Tonge, Peter D., Puri, Mira C., Lee, Seungbok, Park, Hansoo, Lee, Won-Chul, Hussein, Samer M. I., Bleazard, Thomas, Yun, Ji-Young, Kim, Jihye, Li, Mira, Cloonan, Nicole, Wood, David, Clancy, Jennifer L., Mosbergen, Rowland, Yi, Jae-Hyuk, Yang, Kap-Seok, Kim, Hyungtae, Rhee, Hwanseok, Wells, Christine A., Preiss, Thomas, Grimmond, Sean M., Rogers, Ian M., Nagy, Andras and Seo, Jeong-Sun (2014) An epigenomic roadmap to induced pluripotency reveals DNA methylation as a reprogramming modulator. Nature Communications, 5 1: 5619.1-5619.10. doi:10.1038/ncomms6619

  • Tonge, Peter D., Corso, Andrew J., Monetti, Claudio, Hussein, Samer M. I., Puri, Mira C., Michael, Iacovos P., Li, Mira, Lee, Dong-Sung, Mar, Jessica C., Cloonan, Nicole, Wood, David L., Gauthier, Maely E., Korn, Othmar, Clancy, Jennifer L., Preiss, Thomas, Grimmond, Sean M., Shin, Jong-Yeon, Seo, Jeong-Sun, Wells, Christine A., Rogers, Ian M. and Nagy, Andras (2014) Divergent reprogramming routes lead to alternative stem-cell states. Nature, 516 7530: 192-197. doi:10.1038/nature14047

  • Hussein, Samer M. I., Puri, Mira C., Tonge, Peter D., Benevento, Marco, Corso, Andrew J., Clancy, Jennifer L., Mosbergen, Rowland, Li, Mira, Lee, Dong-Sung, Cloonan, Nicole, Wood, David L. A., Munoz, Javier, Middleton, Robert, Korn, Othmar, Patel, Hardip R., White, Carl A., Shin, Jong-Yeon, Gauthier, Maely E., Le Cao, Kim-Anh, Kim, Jong-Il, Mar, Jessica C., Shakiba, Nika, Ritchie, William, Rasko, John E. J., Grimmond, Sean M., Zandstra, Peter W., Wells, Christine A., Preiss, Thomas, Seo, Jeong-Sun, Heck, Albert J. R., Rogers, Ian M. and Nagy, Andras (2014) Genome-wide characterization of the routes to pluripotency. Nature, 516 7530: 198-+. doi:10.1038/nature14046

  • Benevento, Marco, Tonge, Peter D., Puri, Mira C., Hussein, Samer M. I., Cloonan, Nicole, Wood, David L., Grimmond, Sean M., Nagy, Andras, Munoz, Javier and Heck, Albert J. R. (2014) Proteome adaptation in cell reprogramming proceeds via distinct transcriptional networks. Nature Communications, 5 1: 5613.1-5613.11. doi:10.1038/ncomms6613

  • Nones, Katia, Waddell, Nic, Song, Sarah, Patch, Ann-Marie, Miller, David, Johns, Amber, Wu, Jianmin, Kassahn, Karin S., Wood, David, Bailey, Peter, Fink, Lynn, Manning, Suzanne, Christ, Angelika N., Nourse, Craig, Kazakoff, Stephen, Taylor, Darrin, Leonard, Conrad, Chang, David K., Jones, Marc D., Thomas, Michelle, Watson, Clare, Pinese, Mark, Cowley, Mark, Rooman, Ilse, Pajic, Marina, Butturini, Giovanni, Malpaga, Anna, Corbo, Vincenzo, Crippa, Stefano, Falconi, Massimo, Zamboni, Guiseppe, Castelli, Paola, APGI, Lawlor, Rita T., Gill, Anthony J., Scarpa, Aldo, Pearson, John V., Biankin, Andrew V. and Grimmond, Sean M. (2014) Genome-wide DNA methylation patterns in pancreatic ductal adenocarcinoma reveal epigenetic deregulation of SLIT-ROBO, ITGA2 and MET signaling. International Journal of Cancer, 2014 5: 1110-1118. doi:10.1002/ijc.28765

  • Wong, Emily S. W., Hardy, Margaret C., Wood, David, Bailey, Timothy and King, Glenn F. (2013) SVM-based prediction of propeptide cleavage sites in spider toxins identifies toxin innovation in an Australian tarantula. PLoS ONE, 8 7: e66279.1-e66279.11. doi:10.1371/journal.pone.0066279

  • Cloonan, Nicole, Wani, Shivangi, Xu, Qinying, Gu, Jian, Lea, Kristi, Heater, Sheila, Barbacioru, Catalin, Steptoe, Anita L., Martin, Hilary C., Nourbakhsh, Ehsan, Krishnan, Keerthana, Gardiner, Brooke, Wang, Xiaohui, Nones, Katia, Steen, Jason A., Matigan, Nicholas A., Wood, David L., Kassahn, Karin S., Waddell, Nic, Shepherd, Jill, Lee, Clarence, Ichikawa, Jeff, McKernan, Kevin, Bramlett, Kelli, Kuersten, Scott and Grimmond, Sean M. (2011) MicroRNAs and their isomiRs function cooperatively to target common biological pathways. Genome Biology: biology for the post-genomic era, 12 12: 1-20. doi:10.1186/gb-2011-12-12-r126

  • Renfree, Marilyn B., Papenfuss, Anthony T., Deakin, Janine E., Lindsay, James, Heider, Thomas, Belov, Katherine, Rens, Willem, Waters, Paul D., Pharo, Elizabeth A., Shaw, Geoff, Wong, Emily S. W., Lefevre, Christopher M., Nicholas, Kevin R., Kuroki, Yoko, Wakefield, Matthew J., Zenger, Kyall R., Wang, Chenwei, Ferguson-Smith, Malcolm, Nicholas, Frank W., Hickford, Danielle, Yu, Hongshi, Short, Kirsty R., Siddle, Hannah V., Frankenberg, Stephen R., Chew, Keng Yih, Menzies, Brandon R., Stringer, Jessica M., Suzuki, Shunsuke, Hore, Timothy A., Delbridge, Margaret L., Mohammadi, Amir, Schneider, Nanette Y., Hu, Yanqiu, O'Hara, William, Al Nadaf, Shafagh, Wu, Chen, Feng, Zhi-Ping, Cocks, Benjamin G., Wang, Jianghui, Flicek, Paul, Searle, Stephen M. J., Fairley, Susan, Beal, Kathryn, Herrero, Javier, Carone, Dawn M., Suzuki, Yutaka, Sugano, Sumio, Toyoda, Atsushi, Sakaki, Yoshiyuki, Kondo, Shinji, Nishida, Yuichiro, Tatsumoto, Shoji, Mandiou, Ion, Hsu, Arthur, McColl, Kaighin A., Lansdell, Benjamin, Weinstock, George, Kuczek, Elizabeth, McGrath, Annette, Wilson, Peter, Men, Artem, Hazar-Rethinam, Mehlika, Hall, Allison, Davis, John, Wood, David, Williams, Sarah, Sundaravadanam, Yogi, Muzny, Donna M., Jhangiani, Shalini N., Lewis, Lora R., Morgan, Margaret B., Okwuonu, Geoffrey O., Ruiz, San Juana, Santibanez, Jireh, Nazareth, Lynne, Cree, Andrew, Fowler, Gerald, Kovar, Christie L., Dinh, Huyen H., Joshi, Vandita, Jing, Chyn, Lara, Fremiet, Thornton, Rebecca, Chen, Lei, Deng, Jixin, Liu, Yue, Shen, Joshua Y., Song, Xing-Zhi, Edson, Janette, Troon, Carmen, Thomas, Daniel, Stephens, Amber, Yapa, Lankesha, Levchenko, Tanya, Gibbs, Richard A., Cooper, Desmond W., Speed, Terence P., Fujiyama, Asao, Graves, Jennifer A. M., O'Neill, Rachel J., Pask, Andrew J., Forrest, Susan M. and Worley, Kim C. (2011) Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development. Genome Biology, 12 8: R81.1-R81.25. doi:10.1186/gb-2011-12-8-r81

  • Wood, David L. A., Xu, Qinying, Pearson, John V., Cloonan, Nicole and Grimmond, Sean M. (2011) X-MATE: a flexible system for mapping short read data. Bioinformatics, 27 4: 580-581. doi:10.1093/bioinformatics/btq698

  • Volker, Herzig, Wood, David, Newell, Felicity, Chaumeil, Pierre-Alain, Kaas, Quentin, Binford, Greta J., Nicholson, Graham M., Gorse, Dominique and King, Glenn F. (2011) ArachnoServer 2.0, an updated online resource for spider toxin sequences and structures. Nucleic Acids Research, 39 Supp. 1: D653-D657. doi:10.1093/nar/gkq1058

  • Wood, D. L. A., Miljenovic, T, Cai, S, Raven, R. J., Kaas, Q, Escoubas, P, Herzig, V, Wilson, D and King, G (2009) ArachnoServer: a database of protein toxins from spiders. BMC Genomics, 10 Article #375: 1-8. doi:10.1186/1471-2164-10-375

  • Yao, F, Seed, C, Farrugia, A, Morgan, D, Cordner, S, Wood, D and Zheng, MH (2007) The risk of HIV, HBV, HCV and HTLV infection among musculoskeletal tissue donors in Australia. American Journal of Transplantation, 7 12: 2723-2726. doi:10.1111/j.1600-6143.2007.02012.x

  • Wood, D. A., Kotseva, K., Jennings, C., Mead, A., Jones, J., Holden, A., Connolly, S., De Bacquer, D. and De Backer, G. (2004) EUROACTION: A European Society of Cardiology demonstration project in preventive cardiology.: A cluster randomised controlled trial of a multi-disciplinary preventive cardiology programme for coronary patients, asymptomatic high risk individuals and their. European Heart Journal, 6 Supplement J: j3-j15. doi:10.1093/eurheartj/6.suppl_j.j3

Conference Publication

  • Budden, Kurtis, Gellatly, Shaan, Wood, David, Morrison, Mark, Cooper, Matthew, Dennis, Paul G., Hugenholtz, Philip and Hansbro, Philip (2017). Dietary fibre and microbial metabolites protect against cigarette smoke-induced lung pathology in mice. In: 22nd Congress of the Asian Pacific Society of Respirology, Sydney, Australia, (4-5). 23–26 November 2017.

  • Gellatly, S., Dennis, P., Jarnicki, A., Lachner, N., Wood, D., Fricker, M., Budden, K., Liu, G., Keely, S., Morrison, M., Willner, D., Cooper, M., Hugenholtz, P. and Hansbro, P. (2016). Healthy Gut Microbiota Ameliorates Experimental Chronic Obstructive Pulmonary Disease. In: Annual Scientific Meeting of the Thoracic Society of Australia and New Zealand and the Australian and New Zealand Society of Respiratory Science 2014, Perth Western Australia, (77-77). 1–6 April 2016. doi:10.1111/resp.12754_22