The University of Queensland

SWATH-MS glycoproteomics reveals consequences of defects in the glycosylation machinery

Zacchi, Lucia F. and Schulz, Benjamin L. (2016). SWATH-MS glycoproteomics reveals consequences of defects in the glycosylation machinery. Molecular and Cellular Proteomics, 15 (7), 2435-2447. doi: 10.1074/mcp.M115.056366

N-glycoprotein macroheterogeneity: biological implications and proteomic characterization.

Zacchi, Lucia F. and Schulz, Benjamin L. (2015). N-glycoprotein macroheterogeneity: biological implications and proteomic characterization.. Glycoconjugate Journal, 33 (3), 1-18. doi: 10.1007/s10719-015-9641-3

Data-independent acquisition for yeast glycoproteomics

Zacchi, Lucía F. and Schulz, Benjamin L. (2019). Data-independent acquisition for yeast glycoproteomics. Yeast systems biology. (pp. 191-202) New York, NY USA: Humana Press. doi: 10.1007/978-1-4939-9736-7_11

Endoplasmic reticulum-associated degradation and protein quality control

Zacchi, L.F., Caramelo, J.J., McCracken, A.A. and Brodsky, J.L. (2016). Endoplasmic reticulum-associated degradation and protein quality control. Encyclopedia of cell biology. (pp. 596-611) edited by Ralph A. Bradshaw and Philip D. Stahl. Waltham, MA, United States: Academic Press. doi: 10.1016/B978-0-12-394447-4.10072-0

Evaluation of phage display biopanning strategies for the selection of anti-cell surface receptor antibodies

Panagides, Nadya, Zacchi, Lucia F., Souza, Mitchell J. De, Morales, Rodrigo A. V., Karnowski, Alexander, Liddament, Mark T., Owczarek, Catherine M., Mahler, Stephen M., Panousis, Con, Jones, Martina L. and Fercher, Christian (2022). Evaluation of phage display biopanning strategies for the selection of anti-cell surface receptor antibodies. International Journal of Molecular Sciences, 23 (15) 8470, 8470. doi: 10.3390/ijms23158470

TorsinA folding and N-linked glycosylation are sensitive to redox homeostasis

Honer, Jonas, Niemeyer, Katie M., Fercher, Christian, Diez Tissera, Ana L., Jaberolansar, Noushin, Jafrani, Yohaann M. A., Zhou, Chun, Caramelo, Julio J., Shewan, Annette M., Schulz, Benjamin L., Brodsky, Jeffrey L. and Zacchi, Lucía F. (2021). TorsinA folding and N-linked glycosylation are sensitive to redox homeostasis. Biochimica et Biophysica Acta. Molecular Cell Research, 1868 (9) 119073, 119073. doi: 10.1016/j.bbamcr.2021.119073

The histone chaperone HIR maintains chromatin states to control nitrogen assimilation and fungal virulence

Jenull, Sabrina, Mair, Theresia, Tscherner, Michael, Penninger, Philipp, Zwolanek, Florian, Silao, Fitz-Gerald S., de San Vicente, Kontxi Martinez, Riedelberger, Michael, Bandari, Naga C., Shivarathri, Raju, Petryshyn, Andriy, Chauhan, Neeraj, Zacchi, Lucia F., -Landmann, Salomé LeibundGut, Ljungdahl, Per O. and Kuchler, Karl (2021). The histone chaperone HIR maintains chromatin states to control nitrogen assimilation and fungal virulence. Cell Reports, 36 (3) 109406, 109406. doi: 10.1016/j.celrep.2021.109406

N-glycosylation on Oryza sativa root germin-like protein 1 is conserved but not required for stability or activity

Rubbab, Tehseen, Pegg, Cassandra L., Phung, Toan K., Nouwens, Amanda S., Yeo, K.Y. Benjamin, Zacchi, Lucia F., Muhammad, Amna, Naqvi, S.M. Saqlan and Schulz, Benjamin L. (2021). N-glycosylation on Oryza sativa root germin-like protein 1 is conserved but not required for stability or activity. Biochemical and Biophysical Research Communications, 553, 72-77. doi: 10.1016/j.bbrc.2021.03.024

Coagulation factor IX analysis in bioreactor cell culture supernatant predicts quality of the purified product

Zacchi, Lucia F., Roche-Recinos, Dinora, Pegg, Cassandra L., Phung, Toan K., Napoli, Mark, Aitken, Campbell, Sandford, Vanessa, Mahler, Stephen M., Lee, Yih Yean, Schulz, Benjamin L. and Howard, Christopher B. (2021). Coagulation factor IX analysis in bioreactor cell culture supernatant predicts quality of the purified product. Communications Biology, 4 (1) 390, 390. doi: 10.1038/s42003-021-01903-x

Resolving the TorsinA Oligomerization Conundrum: The Glycan Hypothesis

Fercher, Christian and Zacchi, Lucía F. (2020). Resolving the TorsinA Oligomerization Conundrum: The Glycan Hypothesis. Frontiers in Molecular Biosciences, 7 585643, 585643. doi: 10.3389/fmolb.2020.585643

Identification of novel glycosylation events on human serum-derived factor IX

Pegg, Cassandra L., Zacchi, Lucia F., Recinos, Dinora Roche, Howard, Christopher B. and Schulz, Benjamin L. (2020). Identification of novel glycosylation events on human serum-derived factor IX. Glycoconjugate Journal, 37 (4), 471-483. doi: 10.1007/s10719-020-09922-2

Glycoproteomic measurement of site-specific polysialylation

Pelingon, Ruby, Pegg, Cassandra L., Zacchi, Lucia F., Phung, Toan K., Howard, Christopher B., Xu, Ping, Hardy, Matthew P., Owczarek, Catherine M. and Schulz, Benjamin L. (2020). Glycoproteomic measurement of site-specific polysialylation. Analytical Biochemistry, 596 113625, 113625. doi: 10.1016/j.ab.2020.113625

S-trap eliminates cell culture media polymeric surfactants for effective proteomic analysis of mammalian cell bioreactor supernatants

Zacchi, Lucia F., Roche Recinos, Dinora, Otte, Ellen, Aitken, Campbell, Hunt, Tony, Sandford, Vanessa, Lee, Yih Yean, Schulz, Benjamin L. and Howard, Christopher B. (2020). S-trap eliminates cell culture media polymeric surfactants for effective proteomic analysis of mammalian cell bioreactor supernatants. Journal of Proteome Research, 19 (5), 2149-2158. doi: 10.1021/acs.jproteome.0c00106

DIALib: an automated ion library generator for data independent acquisition mass spectrometry analysis of peptides and glycopeptides

Phung, Toan K., Zacchi, Lucia F. and Schulz, Benjamin L. (2020). DIALib: an automated ion library generator for data independent acquisition mass spectrometry analysis of peptides and glycopeptides. Molecular Omics, 16 (2), 100-112. doi: 10.1039/c9mo00125e

Pre- and post-puberty expression of genes and proteins in the uterus of Bos indicus heifers: the luteal phase effect post-puberty

Fortes, M. R.S., Zacchi, L. F., Nguyen, L. T., Raidan, F., Weller, M. M.D.C.A., Choo, J. J.Y., Reverter, A., Rego, J. P.A., Boe-Hansen, G. B., Porto-Neto, L. R., Lehnert, S. A., Cánovas, A., Schulz, B. L., Islas-Trejo, A., Medrano, J. F., Thomas, M. G. and Moore, S. S. (2018). Pre- and post-puberty expression of genes and proteins in the uterus of Bos indicus heifers: the luteal phase effect post-puberty. Animal Genetics, 49 (6), 539-549. doi: 10.1111/age.12721

Adipose tissue proteomic analyses to study puberty in Brahman heifers

Nguyen, L. T., Zacchi, L. F., Schulz, B. L., Moore, S. S. and Fortes, M. R. S. (2018). Adipose tissue proteomic analyses to study puberty in Brahman heifers. Journal of Animal Science, 96 (6), 2392-2398. doi: 10.1093/jas/sky128

Early-onset torsion dystonia: a novel high-throughput yeast genetic screen for factors modifying protein levels of torsinA Delta E

Zacchi, Lucia F., Dittmar, John C., Mihalevic, Michael J., Shewan, Annette M., Schulz, Benjamin L., Brodsky, Jeffrey L. and Bernstein, Kara A. (2017). Early-onset torsion dystonia: a novel high-throughput yeast genetic screen for factors modifying protein levels of torsinA Delta E. Disease Models & Mechanisms, 10 (9), 1129-1140. doi: 10.1242/dmm.029926

N-glycosylation triggers a dual selection pressure in eukaryotic secretory proteins

Medus, Maximo L., Gomez, Gabriela E., Zacchi, Lucia F., Couto, Paula M., Labriola, Carlos A., Labanda, Maria S., Bielsa, Rodrigo Corti, Clérico, Eugenia M., Schulz, Benjamin L. and Caramelo, Julio J. (2017). N-glycosylation triggers a dual selection pressure in eukaryotic secretory proteins. Scientific Reports, 7 (1) 8788, 8788. doi: 10.1038/s41598-017-09173-6

SWATH-MS glycoproteomics reveals consequences of defects in the glycosylation machinery

Zacchi, Lucia F. and Schulz, Benjamin L. (2016). SWATH-MS glycoproteomics reveals consequences of defects in the glycosylation machinery. Molecular and Cellular Proteomics, 15 (7), 2435-2447. doi: 10.1074/mcp.M115.056366

N-glycoprotein macroheterogeneity: biological implications and proteomic characterization.

Zacchi, Lucia F. and Schulz, Benjamin L. (2015). N-glycoprotein macroheterogeneity: biological implications and proteomic characterization.. Glycoconjugate Journal, 33 (3), 1-18. doi: 10.1007/s10719-015-9641-3

Erratum to: Biocontrol and PGPR features in native strains isolated from saline soils of Argentina

Principe, Analia, Alvarez, Florencia, Castro, Marina G., Zacchi, Lucia F., Fischer, Sonia E., Mori, Gladys B. and Jofre, Edgardo (2014). Erratum to: Biocontrol and PGPR features in native strains isolated from saline soils of Argentina. Current Microbiology, 69 (3), 404-404. doi: 10.1007/s00284-014-0601-0

Intracellular Complexes of the Early-Onset Torsion Dystonia-Associated AAA+ ATPase TorsinA

Li, Hui, Wu, Hui-Chuan, Liu, Zhonghua, Zacchi, Lucia F., Brodsky, Jeffrey L. and Zolkiewski, Michal (2014). Intracellular Complexes of the Early-Onset Torsion Dystonia-Associated AAA+ ATPase TorsinA. SpringerPlus, 3 (1) 743, 743.1-743.5. doi: 10.1186/2193-1801-3-743

The BiP molecular chaperone plays multiple roles during the biogenesis of TorsinA, an AAA+ ATPase associated with the neurological disease Early-Onset Torsion Dystonia

Zacchi, Lucía F., Wu, Hui-Chuan, Bell, Samantha L., Millen, Linda, Paton, Adrienne W., Paton, James C., Thomas, Philip J., Zolkiewski, Michal and Brodsky, Jeffrey L. (2014). The BiP molecular chaperone plays multiple roles during the biogenesis of TorsinA, an AAA+ ATPase associated with the neurological disease Early-Onset Torsion Dystonia. Journal of Biological Chemistry, 289 (18), 12727-12747. doi: 10.1074/jbc.M113.529123

Shuttle vectors for facile cloning through gap repair and integration into a neutral locus in Candida albicans

Gerami-Nejad, Maryam, Zacchi, Lucia F., McClellan, Mark, Matter, Kathleen and Berman, Judith (2013). Shuttle vectors for facile cloning through gap repair and integration into a neutral locus in Candida albicans. Microbiology, 159 (Part 3), 565-579. doi: 10.1099/mic.0.064097-0

HOS2 and HDA1 encode histone deacetylases with opposing roles in Candida albicans morphogenesis

Zacchi, Lucia F., Schulz, Wade L. and Davis, Dana A. (2010). HOS2 and HDA1 encode histone deacetylases with opposing roles in Candida albicans morphogenesis. PLoS One, 5 (8), e12171.1-e12171.7. doi: 10.1371/journal.pone.0012171

Low dosage of histone H4 leads to growth defects and morphological changes in Candida albicans

Zacchi, Lucia F., Selmecki, Anna M., Berman, Judith and Davis, Dana A. (2010). Low dosage of histone H4 leads to growth defects and morphological changes in Candida albicans. PLoS One, 5 (5), e10629.1-e10629.12. doi: 10.1371/journal.pone.0010629

Mds3 regulates morphogenesis in Candida albicans through the TOR pathway

Zacchi, Lucia F., Gomez-Raja, Jonathan and Davis, Dana A. (2010). Mds3 regulates morphogenesis in Candida albicans through the TOR pathway. Molecular and Cellular Biology, 30 (14), 3695-3710. doi: 10.1128/MCB.01540-09

Biocontrol and PGPR features in native strains isolated from saline soils of Argentina

Principe, Analia, Alvarez, Florencia, Castro, Marina G., Zacchi, Lucia, Fischer, Sonia E., Mori, Gladys B. and Jofre, Edgardo (2007). Biocontrol and PGPR features in native strains isolated from saline soils of Argentina. Current Microbiology, 55 (4), 314-322. doi: 10.1007/s00284-006-0654-9

The ER chaperones BiP and Jem1/Scj1 are genetic modifiers of TorsinA, the AAA plus ATPase associated with the neurological disease primary torsion dystonia

Zacchi, Lucia Florencia, Wu, Hui-Chuan, Niemeyer, Katie, Bell, Samantha, Zolkiewski, Michal and Brodsky, Jeffrey (2012). The ER chaperones BiP and Jem1/Scj1 are genetic modifiers of TorsinA, the AAA plus ATPase associated with the neurological disease primary torsion dystonia. Experimental Biology Meeting, San Diego, CA, United States, 21-25 April 2012. Hoboken, NJ, United States: John Wiley & Sons.