Associate Professor Lachlan Coin

Principal Research Fellow

Institute for Molecular Bioscience

Affiliate Associate Professor

School of Chemistry and Molecular Biosciences
Faculty of Science
+61 7 334 62649


I was awarded a PhD in bioinformatics from the University of Cambridge in 2005 for research into the evolution of protein domains. I took up a position as Reserch Council UK research fellow in the Department of Epidemiology and Public Health at Imperial College (located at St Marys Hospital), where I investigated the role of genetic variation in complex disease. In particular I developed tools for characterising copy number variation in order to better understand the role of copy number variation in complex phenotypes, which lead to the identification of copy number variants associated with obesity. I also developed tools for identification of pathways associated with disease as well as for analysing pleitropic SNPs. With Professor Mike Levin, I also investigated the use of gene expression microarrays to discover biomarkers of active tuberculosis. In 2012 I took up a research group leader position at the Institute for Molecular Bioscience at the University of Queensland. I also took up an ARC Future Fellowship in 2012.

Research Interests

  • Characterising somatic copy number alterations from cell free DNA
    We have developed bioinformatics tools for characterizing copy number alterations from high throughput cell free sequence data, without using a reference panel. We are also improving techniques for copy number profiling in ultra-low cellularity tumours
  • Rapid diagnosis of antibiotic resistant bacterial infection
    We are developing tools to rapidly diagnosis antibiotic resistant bacterial infection. We are approaching this from two angles - identification of changes in the host transcriptional response to bacterial vs viral infection; as well as enrichment of the pathogen direct from biological sample, followed by real-time nanopore sequencing. We are developing approaches to efficiently enrich for bacterial DNA, as well as bioinformatics approaches for streaming analysis of sequence data.
  • Characterising complex genomic variation in human populations
    We are developing bioinformatic and genomic tools for characterizing complex genomic variation, including copy number variation, inversions and repeat variation. We have developed tools for characterising copy number variation from targeted re-sequencing data, which have been used to characterise copy number variation in the complement factor H locus. We are developing custom capture arrays for assaying tandem repeat variation, using a combination of short and long-read sequencing technologies. Our goal is to use these tools to map the impact of complex genomic variation on disease risk. We are currently focusing on obesity, inflammatory diseases such as systemic lupus erythematosus, as well as susceptibility to infectious disease.

Research Impacts

My current research focuses on developing diagnostic and prognostic biomarkers of disease using high throughput genomic and transcriptomic technologies. We are developing biomarkers in two areas - infectious disease and cancer.

We have discovered biomarkers for diagnosis of active tuberculosis from whole blood. These biomarkers distinguish active TB from diseases which have a similar clinical presentation, e.g. pnuemonia, as well as from healthy controls. This biomarker has been validated in populations in which TB diagnosis is typically challenging, including children, as well as individuals who have HIV.

We have discovered a two-transcript whole-blood biomarker for distinguishing bacterial from viral infection in children.

We have developed streaming algorithms for real-time identification of bacterial species, strain and antibiotic resistant profile from real-time nanopore sequence data.

We have developed tools for identification of somatic copy number alterations in cancer which have very low (i.e less than 20%) tumour purity.

We have developed tools for identifying tumour copy number alterations from cell-free DNA which do not require a reference panel.


  • Bioinformatics, University of Cambridge


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Journal Article

  • Kaforou, Myrsini, Herberg, Jethro A., Wright, Victoria J., Coin, Lachlan J. M. and Levin, Michael (2017) Diagnosis of bacterial infection using a 2-transcript host RNA signature in febrile infants 60 days or younger. Journal of the American Medical Association, 317 15: 1577-1578. doi:10.1001/jama.2017.1365

  • Chen, Wenhan, Robertson, Alan J., Ganesamoorthy, Devika and Coin, Lachlan J. M. (2017) sCNAphase: using haplotype resolved read depth to genotype somatic copy number alterations from low cellularity aneuploid tumors. Nucleic Acids Research, 45 5: . doi:10.1093/nar/gkw1086

  • Shimizu, Chisato, Eleftherohorinou, Hariklia, Wright, Victoria J., Kim, Jihoon, Alphonse, Martin P., Perry, James C., Cimaz, Rolando, Burgner, David, Dahdah, Nagib, Hoang, Long T., Khor, Chiea Chuen, Salgado, Andrea, Tremoulet, Adriana H., Davila, Sonia, Kuijpers, Taco W., Hibberd, Martin L., Johnson, Todd A., Takahashi, Atsushi, Tsunoda, Tatsuhiko, Kubo, Michiaki, Tanaka, Toshihiro, Onouchi, Yoshihiro, Yeung, Rae S. M., Coin, Lachlan J. M., Levin, Michael and Burns, Jane C. (2016) Genetic variation in the SLC8A1 calcium signaling pathway is associated with susceptibility to Kawasaki disease and coronary artery abnormalities. Circulation: Cardiovascular Genetics, 9 6: 559-568. doi:10.1161/CIRCGENETICS.116.001533

  • Martinon-Torres, Federico, Png, Eileen, Khor, Chiea Chuen, Davila, Sonia, Wright, Victoria J., Sim, Kar Seng, Vega, Ana, Fachal, Laura, Inwald, David, Nadel, Simon, Carrol, Enitan D., Martinon-Torres, Nazareth, Marcos Alonso, Sonia, Carracedo, Angel, Morteruel, Elvira, Lopez-Bayon, Julio, Concha Torre, Andres, Calvo Monge, Cristina, Gonzalez de Aguilar, Pilar Azcon, Esteban Torne, Elisabeth, del Carmen Martinez-Padilla, Maria, Maria Martinon-Sanchez, Jose, Levin, Michael, Hibberd, Martin L., Salas, Antonio, ESIGEM network, ESPID meningococcal consortium, Coin, Lachlan and EUCLIDS consortium (2016) Natural resistance to meningococcal disease related to CFH loci: meta-analysis of genome-wide association studies. Scientific Reports, 6 35842.1-35842.9. doi:10.1038/srep35842

  • Herberg, Jethro A., Kaforou, Myrsini, Wright, Victoria J., Shailes, Hannah, Eleftherohorinou, Hariklia, Hoggart, Clive J., Cebey-Lopez, Miriam, Carter, Michael J., Janes, Victoria A., Gormley, Stuart, Shimizu, Chisato, Tremoulet, Adriana H., Barendregt, Anouk M., Salas, Antonio, Kanegaye, John, Pollard, Andrew J., Faust, Saul N., Patel, Sanjay, Kuijpers, Taco, Martinon-Torres, Federico, Burns, Jane C., Coin, Lachlan J. M. and Levin, Michael (2016) Diagnostic test accuracy of a 2-transcript host RNA signature for discriminating bacterial vs viral infection in febrile children. The Journal of the American Medical Association, 316 8: 835-845. doi:10.1001/jama.2016.11236

  • Cao, Minh Duc, Ganesamoorthy, Devika, Elliott, Alysha G., Zhang, Huihui, Cooper, Matthew A. and Coin, Lachlan J. M. (2016) Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION (TM) sequencing. Gigascience, 5 1: . doi:10.1186/s13742-016-0137-2

  • Poznik, G. David, Xue, Yali, Mendez, Fernando L., Willems, Thomas F., Massaia, Andrea, Sayres, Melissa A. Wilson, Ayub, Qasim, McCarthy, Shane A., Narechania, Apurva, Kashin, Seva, Chen, Yuan, Banerjee, Ruby, Rodriguez-Flores, Juan L., Cerezo, Maria, Shao, Haojing, Gymrek, Melissa, Malhotra, Ankit, Louzada, Sandra, Desalle, Rob, Ritchie, Graham R. S., Cerveira, Eliza, Fitzgerald, Tomas W., Garrison, Erik, Marcketta, Anthony, Mittelman, David, Romanovitch, Mallory, Zhang, Chengsheng, Zheng-Bradley, Xiangqun, Abecasis, Goncalo R., McCarroll, Steven A., Flicek, Paul, Underhill, Peter A., Coin, Lachlan, Zerbino, Daniel R., Yang, Fengtang, Lee, Charles, Clarke, Laura, Auton, Adam, Erlich, Yaniv, Handsaker, Robert E., Bustamante, Carlos D. and Tyler-Smith, Chris (2016) Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences. Nature Genetics, 48 6: 593-599. doi:10.1038/ng.3559

  • Elliott, Alysha G., Ganesamoorthy, Devika, Coin, Lachlan, Cooper, Matthew A. and Cao, Minh Duc (2016) Complete Genome Sequence of Klebsiella quasipneumoniae subsp. similipneumoniae Strain ATCC 700603. Genome Announcements, 4 3: . doi:10.1128/genomeA.00438-16

  • Cao, Minh Duc, Nguyen, Hoang Son, Ganesamoorthy, Devika, Elliott, Alysha, Cooper, Matthew and Coin, Lachlan J. M. (2016) Scaffolding and completing genome assemblies in real-time with nanopore sequencing. bioRxiv, 8 . doi:10.1101/054783

  • Li, Jun, Woods, Susan L., Healey, Sue, Beesley, Jonathan, Chen, Xiaoqing, Lee, Jason S., Sivakumaran, Haran, Wayte, Nicci, Nones, Katia, Waterfall, Joshua J., Pearson, John, Patch, Anne-Marie, Senz, Janine, Ferreira, Manuel A., Kaurah, Pardeep, Mackenzie, Robertson, Heravi-Moussavi, Alireza, Hansford, Samantha, Lannagan, Tamsin R. M., Spurdle, Amanda B., Simpson, Peter T., da Silva, Leonard, Lakhani, Sunil R., Clouston, Andrew D., Bettington, Mark, Grimpen, Florian, Busuttil, Rita A., Di Costanzo, Natasha, Boussioutas, Alex, Jeanjean, Marie, Chong, George, Fabre, Aurelie, Olschwang, Sylviane, Faulkner, Geoffrey J., Bellos, Evangelos, Coin, Lachlan, Rioux, Kevin, Bathe, Oliver F., Wen, Xiaogang, Martin, Hilary C., Neklason, Deborah W., Davis, Sean R., Walker, Robert L., Calzone, Kathleen A., Avital, Itzhak, Heller, Theo, Koh, Christopher, Pineda, Marbin, Rudloff, Udo, Quezado, Martha, Pichurin Pavel N., Hulick, Peter J., Weissman, Scott M., Newlin, Anna, Rubinstein, Wendy S., Sampson, Jone E., Hamman, Kelly, Goldgar, David, Poplawski, Nicola, Phillips, Kerry, Schofield, Lyn, Armstrong, Jacqueline, Kiraly-Borri, Cathy, Suthers, Graeme K., Huntsman, David G., Foulkes, William D., Carneiro, Fatima, Lindor, Noralane M., Edwards, Stacey L., French, Juliet D., Waddell, Nicola, Meltzer, Paul S., Worthley, Daniel L., Schrader, Kasmintan A. and Chenevix-Trench, Georgia (2016) Point mutations in Exon 1B of APC reveal gastric adenocarcinoma and proximal polyposis of the stomach as a familial adenomatous polyposis variant. American Journal of Human Genetics, 98 5: 830-842. doi:10.1016/j.ajhg.2016.03.001

  • Cao, Minh Duc, Ganesamoorthy, Devika, Cooper, Matthew A. and Coin, Lachlan J.M. (2015) Realtime analysis and visualisation of MinION sequencing data with npReader. Bioinformatics, 32 5: 764-766. doi:10.1093/bioinformatics/btv658

  • The 1000 Genomes Project Consortium and Coin, Lachlan (2015) A global reference for human genetic variation. Nature, 526 7571: 68-74. doi:10.1038/nature15393

  • Bellos, Evangelos, Kumar, Vikrant, Lin, Clarabelle, Maggi, Jordi, Yang Phua, Zai Yang, Cheng, Ching-Yu, Cheung, Chui Ming Gemmy, Hibberd, Martin L., Wong, Tien Yin, Coin, Lachlan J. M. and Davila, Sonia (2014) cnvCapSeq: detecting copy number variation in long-range targeted resequencing date. Nucleic Acids Research, 42 20: . doi:10.1093/nar/gku849

  • Ramasamy, Adaikalavan, Trabzuni, Daniah, Guelfi, Sebastian, Varghese, Vibin, Smith, Colin, Walker, Robert, De, Tisham, Coin, Lachlan, de Silva, Rohan, Cookson, Mark R., Singleton, Andrew B., Hardy, John, Ryten, Mina and Weale, Michael E. (2014) Genetic variability in the regulation of gene expression in ten regions of the human brain. Nature Neuroscience, 17 10: 1418-1428. doi:10.1038/nn.3801

  • Bellos, Evangelos and Coin, Lachlan J. M. (2014) cnvOffSeq: detecting intergenic copy number variation using off-target exome sequencing data. Bioinformatics, 30 17: i639-i645. doi:10.1093/bioinformatics/btu475

  • Anderson, Suzanne T., Kaforou, Myrsini, Brent, Andrew J., Wright, Victoria J., Banwell, Claire M., Chagaluka, George, Crampin, Amelia C., Dockrell, Hazel M., French, Neil, Hamilton, Melissa S., Hibberd, Martin L., Kern, Florian, Langford, Paul R., Ling, Ling, Mlotha, Rachel, Ottenhoff, Tom H. M., Pienaar, Sandy, Pillay, Vashini, Scott, J. Anthony G., Twahir, Hemed, Wilkinson, Robert J., Coin, Lachlan J., Heyderman, Robert S., Levin, Michael, Eley, Brian and for the ILULU Consortium and KIDS TB Study Group (2014) Diagnosis of childhood tuberculosis and host RNA expression in Africa. New England Journal of Medicine, 370 18: 1712-1723. doi:10.1056/NEJMoa1303657

  • Zhang, Fan, Chen, Ruoyan, Liu, Dongbing, Yao, Xiaotian, Li, Guoqing, Jin, Yabin, Yu, Chang, Li, Yingrui and Coin, Lachlan J. M. (2013) YHap: A population model for probabilistic assignment of Y haplogroups from re-sequencing data. BMC Bioinformatics, 14 1: 331.1-331.4. doi:10.1186/1471-2105-14-331

  • Alves, Alexessander Couto, Bruhn, Soren, Ramasamy, Adaikalavan, Wang, Hui, Holloway, John W., Hartikainen, Anna-Liisa, Jarvelin, Marjo-Riitta, Benson, Mikael, Balding, David J. and Coin, Lachlan J. M. (2013) Dysregulation of complement system and CD4+T cell activation pathways implicated in allergic response. PLoS One, 8 10: e74821.1-e74821.15. doi:10.1371/journal.pone.0074821

  • Bønnelykke, Klaus, Matheson, Melanie C., Pers, Tune H., Granell, Raquel, Strachan, David P., Alves, Alexessander Couto, Linneberg, Allan, Curtin, John A., Warrington, Nicole M., Standl, Marie, Kerkhof, Marjan, Jonsdottir, Ingileif, Bukvic, Blazenka K., Kaakinen, Marika, Sleimann, Patrick, Thorleifsson, Gudmar, Thorsteinsdottir, Unnur, Schramm, Katharina, Baltic, Svetlana, Kreiner-Møller, Eskil, Simpson, Angela, St Pourcain, Beate, Coin, Lachlan, Hui, Jennie, Walters, Eugene H., Tiesler, Carla M. T., Duffy, David L., Jones, Graham, Ring, Susan M., McArdle, Wendy L., Price, Loren, Robertson, Colin F., Pekkanen, Juha, Tang, Clara S., Thiering, Elisabeth, Montgomery, Grant W., Hartikainen, Anna-Liisa, Dharmage, Shyamali C., Husemoen, Lise L., Herder, Christian, Kemp, John P., Elliot, Paul, James, Alan, Waldenberger, Melanie, Abramson, Michael J., Fairfax, Benjamin P., Knight, Julian C., Gupta, Ramneek, Thompson, Philip J., Holt, Patrick, Sly, Peter, Hirschhorn, Joel N., Blekic, Mario, Weidinger, Stephan, Hakonarsson, Hakon, Stefansson, Kari, Heinrich, Joachim, Postma, Dirkje S., Custovic, Adnan, Pennell, Craig E., Jarvelin, Marjo-Riitta, Koppelman, Gerard H., Timpson, Nicholas, Ferreira, Manuel A., Bisgaard, Hans, Henderson, A. John, Australian Asthma Genetics Consortium (AAGC), Danoy, Patrick, Henders, Anjali K., Jenkins, Mark, Martin, Nicholas G. and Brown, Matthew A. (2013) Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization. Nature Genetics, 45 8: 902-906. doi:10.1038/ng.2694

  • Couto-Alves, Alexessander, Wright, Victoria J., Perumal, Karnan, Binder, Alexander, Carrol, Enitan D., Emonts, Marieke, de Groot, Ronald, Hazelzet, Jan, Kuijpers, Taco, Nadel, Simon, Zenz, Werner, Ramnarayan, Padmanabhan, Levin, Michael, Coin, Lachlan and Inwald, David P. (2013) A new scoring system derived from base excess and platelet count at presentation predicts mortality in paediatric meningococcal sepsis. Critical Care, 17 2: . doi:10.1186/cc12609

  • Walters, Robin G., Coin, Lachlan J. M., Ruokonen, Aimo, de Smith, Adam J., Moustafa, Julia S. El-Sayed, Jacquemont, Sebastien, Elliott, Paul, Esko, Tonu, Hartikainen, Anna-Liisa, Laitinen, Jaana, Maennik, Katrin, Martinet, Danielle, Meyre, David, Nauck, Matthias, Schurmann, Claudia, Sladek, Rob, Thorleifsson, Gudmar, Thorsteinsdottir, Unnur, Valsesia, Armand, Waeber, Gerard, Zufferey, Flore, Balkau, Beverley, Pattou, Francois, Metspalu, Andres, Voelzke, Henry, Vollenweider, Peter, Stefansson, Kari, Jarvelin, Marjo-Riitta, Beckmann, Jacques S., Froguel, Philippe and Blakemore, Alexandra I. F. (2013) Rare Genomic Structural Variants in Complex Disease: Lessons from the Replication of Associations with Obesity. Plos One, 8 3: e58048.1-e58048.11. doi:10.1371/journal.pone.0058048

  • Shao, Haojing, Bellos, Evangelos, Yin, Hanjiudai, Liu , Xiao, Zou, Jing, Li, Yingrui, Wang, Jun and Coin, Lachlan J. M. (2013) A population model for genotyping indels from next-generation sequence data. Nucleic Acids Research, 41 3: e46.1-e46.6. doi:10.1093/nar/gks1143

  • Kaforou, Myrsini, Wright, Victoria J., Oni, Tolu, French, Neil, Anderson, Suzanne T., Bangani, Nonzwakazi, Banwell, Claire M., Brent, Andrew J., Crampin, Amelia C., Dockrell, Hazel M., Eley, Brian, Heyderman, Robert S., Hibberd, Martin L., Kern, Florian, Langford, Paul R., Ling, Ling, Mendelson, Marc, Ottenhoff, Tom H., Zgambo, Femia, Wilkinson, Robert J., Coin, Lachlan J. and Levin, Michael (2013) Detection of tuberculosis in HIV-infected and -uninfected African adults using whole blood RNA expression signatures: a case-control study. PLoS Medicine, 10 10: e1001538.1-e1001538.17. doi:10.1371/journal.pmed.1001538

  • Seich al Basatena N.-K., Hoggart C.J., Coin L.J. and O'Reilly P.F. (2013) The effect of genomic inversions on estimation of population genetic parameters from SNP data. Genetics, 193 1: 243-253. doi:10.1534/genetics.112.145599

  • Bellos, Evangelos, Johnson, Michael R. and Coin, Lachlan J. M. (2012) cnvHiTSeq: Integrative models for high-resolution copy number variation detection and genotyping using population sequencing data. Genome Biology, 13 12: . doi:10.1186/gb-2012-13-12-r120

  • The 1000 Genomes Project Consortium, Coin, L. J. M. and Li, Yingrui (2012) An integrated map of genetic variation from 1,092 human genomes. Nature, 491 7422: 56-65. doi:10.1038/nature11632

  • Bellos, Evangelos, Coin, Lachlan J. M. and Kaforou, Myrsini (2012) Bioinformatics: living on the edge. Genome Biology, 13 10: . doi:10.1186/gb-2012-13-10-321

  • Ramasamy, Adaikalavan, Kuokkanen, Mikko, Vedantam, Sailaja, Gajdos, Zofia K., Alves, Alexessander Couto, Lyon, Helen N., Ferreira, Manuel A. R., Strachan, David P., Zhao, Jing Hua, Abramson, Michael J., Brown, Matthew A., Coin, Lachlan, Dharmage, Shyamali C., Duffy, David L., Haahtela, Tari, Heath, Andrew C., Janson, Christer, Kahonen, Mika, Khaw, Kay-Tee, Laitinen, Jaana, Le Souef, Peter, Lehtimaki, Terho, Madden, Pamela A. F., Marks, Guy B., Martin, Nicholas G., Matheson, Melanie C., Palmer, Cameron D., Palotie, Aarno, Pouta, Anneli, Robertson, Colin F., Viikari, Jorma, Widen, Elisabeth, Wjst, Matthias, Jarvis, Deborah L., Montgomery, Grant W., Thompson, Philip J., Wareham, Nick, Eriksson, Johan, Jousilahti, Pekka, Laitinen, Tarja, Pekkanen, Juha, Raitakari, Olli T., O'Connor, George T., Salomaa, Veikko, Jarvelin, Marjo-Riitta and Hirschhorn, Joel N. (2012) Genome-Wide Association Studies of Asthma in Population-Based Cohorts Confirm Known and Suggested Loci and Identify an Additional Association near HLA. PLoS One, 7 9 Article No. e44008: e44008-1-e44008-10. doi:10.1371/journal.pone.0044008

  • Barrenas, Fredrik, Chavali, Sreenivas, Couto Alves, Alexessander, Coin, Lachlan, Jarvelin, Marjo-Riitta, Jornsten, Rebecka, Langston, Michael A., Ramasamy, Adaikalavan, Rogers, Gary, Wang, Hui and Benson, Mikael (2012) Highly interconnected genes in disease-specific networks are enriched for disease-associated polymorphisms. Genome Biology, 13 6: R46.1-R46.9. doi:10.1186/gb-2012-13-6-r46

  • Taal, H. Rob, St Pourcain, Beate, Thiering, Elisabeth, Das, Shikta, Mook-Kanamori, Dennis O., Warrington, Nicole M., Kaakinen, Marika, Kreiner-Møller, Eskil, Bradfield, Jonathan P., Freathy, Rachel M., Geller, Frank, Guxens, Mònica, Cousminer, Diana L., Kerkhof, Marjan, Timpson, Nicholas J., Ikram, M. Arfan, Beilin, Lawrence J., Bønnelykke, Klaus, Buxton, Jessica L., Charoen, Pimphen, Chawes, Bo Lund Krogsgaard, Eriksson, Johan, Evans, David M., Hofman, Albert, Kemp, John P., Kim, Cecilia E., Klopp, Norman, Lahti, Jari, Lye, Stephen J., McMahon, George, Mentch, Frank D., Müller-Nurasyid, Martina, O'Reilly, Paul F., Prokopenko, Inga, Rivadeneira, Fernando, Steegers, Eric A. P., Sunyer, Jordi, Tiesler, Carla, Yaghootkar, Hanieh, Breteler, Monique M. B., Debette, Stéphanie, Fornage, Myriam, Gudnason, Vilmundur, Launer, Lenore J., van der Lugt, Aad, Mosley Jr., Thomas H., Seshadri, Sudha, Smith, Albert V., Vernooij, Meike W., Blakemore, Alexandra I. F., Chiavacci, Rosetta M., Feenstra, Bjarke, Fernandez-Banet, Julio, Grant, Struan F. A., Hartikainen, Anna-Liisa, van der Heijden, Albert J., Iñiguez, Carmen, Lathrop, Mark, McArdle, Wendy L., Mølgaard, Anne, Newnham, John P., Palmer, Lyle J., Palotie, Aarno, Pouta, Annneli, Ring, Susan M., Sovio, Ulla, Standl, Marie, Uitterlinden, Andre G., Wichmann, H.-Erich, Vissing, Nadja Hawwa, DeCarli, Charles, van Duijn, Cornelia M., McCarthy, Mark I., Koppelman, Gerard H., Estivill, Xavier, Hattersley, Andrew T., Melbye, Mads, Bisgaard, Hans, Pennell, Craig E., Widen, Elisabeth, Hakonarson, Hakon, Smith, George Davey, Heinrich, Joachim, Jarvelin, Marjo-Riitta, Jaddoe, Vincent W. V., The Cohorts for Heart and Aging Research in Genetic Epidemiology (CHARGE ) Consortium, The Early Genetics & Lifecourse Epidemiology (EAGLE ) Consortium, Coin, Lachlan and Middeldorp, Christel (2012) Common variants at 12q15 and 12q24 are associated with infant head circumference. Nature Genetics, 44 5: 532-538. doi:10.1038/ng.2238

  • O'Reilly, Paul F., Hoggart, Clive J., Pomyen, Yotsawat, Calboli, Federico C. F., Elliott, Paul, Jarvelin, Marjo- Riitta and Coin, Lachlan J. M. (2012) MultiPhen: Joint model of multiple phenotypes can increase discovery in GWAS. PLoS ONE, 7 5: e34861.1-e34861.12. doi:10.1371/journal.pone.0034861

  • Dastani, Zari, Hivert, Marie-France, Timpson, Nicholas, Perry, John R. B., Yuan, Xin, Scott, Robert A., Henneman, Peter, Heid, Iris M., Kizer, Jorge R., Lyytikäinen, Leo-Pekka, Fuchsberger, Christian, Tanaka, Toshiko, Morris, Andrew P., Small, Kerrin, Isaacs, Aaron, Beekman, Marian, Coassin, Stefan, Lohman, Kurt, Qi, Lu, Kanoni, Stavroula, Pankow, James S., Uh, Hae-Won, Wu, Ying, Bidulescu, Aurelian, Rasmussen-Torvik, Laura J., Greenwood, Celia M. T., Ladouceur, Martin, Grimsby, Jonna, Manning, Alisa K., Liu, Ching-Ti, Kooner, Jaspal, Mooser, Vincent E., Vollenweider, Peter, Kapur, Karen A., Chambers, John, Wareham, Nicholas J., Langenberg, Claudia, Frants, Rune, Willems-vanDijk, Ko, Oostra, Ben A., Willems, Sara M., Lamina, Claudia, Winkler, Thomas W., Psaty, Bruce M., Tracy, Russell P., Brody, Jennifer, Chen, Ida, Viikari, Jorma, Kähönen, Mika, Pramstaller, Peter P., Evans, David M., St. Pourcain, Beate, Sattar, Naveed, Wood, Andrew R., Bandinelli, Stefania, Carlson, Olga D., Egan, Josephine M., Böhringer, Stefan, van Heemst, Diana, Kedenko, Lyudmyla, Kristiansson, Kati, Nuotio, Marja-Liisa, Loo, Britt-Marie, Harris, Tamara, Garcia, Melissa, Kanaya, Alka, Haun, Margot, Klopp, Norman, Wichmann, H.-Erich, Deloukas, Panos, Katsareli, Efi, Couper, David J., Duncan, Bruce B., Kloppenburg, Margreet, Adair, Linda S., Borja, Judith B., Wilson, James G., Musani, Solomon, Guo, Xiuqing, Johnson, Toby, Semple, Robert, Teslovich, Tanya M., Allison, Matthew A., Redline, Susan, Buxbaum, Sarah G., Mohlke, Karen L., Meulenbelt, Ingrid, Ballantyne, Christie M., Dedoussis, George V., Hu, Frank B., Liu, Yongmei, Paulweber, Bernhard, Spector, Timothy D., Slagboom, P. Eline, Ferrucci, Luigi, Jula, Antti, Perola, Markus, Raitakari, Olli, Florez, Jose C., Salomaa, Veikko, Eriksson, Johan G., Frayling, Timothy M., Hicks, Andrew A., Lehtimäki, Terho, Smith, George Davey, Siscovick, David S., Kronenberg, Florian, van Duijn, Cornelia, Loos, Ruth J. F., Waterworth, Dawn M., Meigs, James B., Dupuis, Josee, Richards, J. Brent, DIAGRAM+ Consortium, MAGIC Consortium, Coin, Lachlan J., GLGC Investigators and MuTHER Consortium (2012) Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: A multi-ethnic meta-analysis of 45,891 individuals. PloS Genetics, 8 3: e1002607.1-e1002607.23. doi:10.1371/journal.pgen.1002607

  • Coin, Lachlan J. M., Cao, Dandan, Ren, Jingjing, Zuo, Xianbo, Sun, Liangdan, Yang, Sen, Zhang, Xuejun, Cui, Yong, Li, Yingrui, Jin, Xin and Wang, Jun (2012) An exome sequencing pipeline for identifying and genotyping common CNVs associated with disease with application to psoriasis. Bioinformatics, 28 18: I370-I374. doi:10.1093/bioinformatics/bts379

  • Ikram, M. Arfan, Fornage, Myriam, Smith, Albert V., Seshadri, Sudha, Schmidt, Reinhold, Debette, Stephanie, Vrooman, Henri A., Sigurdsson, S., Ropele, Sigurdur, Taal, H. Rob, Mook-Kanamori, Dennis O., Coker, Laura H., Longstreth, W. T., Niessen, Wiro J., Destefano, Anita L., Beiser, Alexa, Zijdenbos, Alex P., Struchalin, Maksim, Jack,Clifford R., Rivadeneira, Fernando, Uitterlinden, Andre G., Knopman, David S., Hartikainen, Anna-Liisa, Pennell, Craig E., Thiering, Elisabeth, Steegers, Eric A. P., Hakonarson, Hakon, Heinrich, Joachim, Palmer, Lyle J., Jarvelin, Marjo-Riitta, Mccarthy, Mark I., Grant, Struan F. A., St Pourcain, Beate, Timpson, Nicholas J., Smith, George D., Sovio, Ulla, Nalls, Mike A., Au, Rhoda, Hofman, Albert, Gudnason, Haukur, Van Der Lugt, Aad, Harris, Tamara B., Meeks, William M., Vernooij, Meike W., Van Buchem, Mark A., Catellier, Diane, Jaddoe, Vincent W. V., Gudnason, Vilmundur, Windham, B. Gwen, Wolf, Philip A., Van Duijn, Cornelia M., Mosley, Thomas H., Schmidt, Helena, Launer, Lenore J., Breteler, Monique M. B., Decarli, Charles, Early Growth Genetics (EGG) Consortium, Coin, Lachlan, Middeldorp, Christel and . (2012) Common variants at 6q22 and 17q21 are associated with intracranial volume. Nature Genetics, 44 5: 539-544. doi:10.1038/ng.2245

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  • Sabatti, Chiara, Service, Susan K., Hartikainen, Anna-Liisa, Pouta, Anneli, Ripatti, Samuli, Brodsky, Jae, Jones, Chris G., Zaitlen, Noah A., Varilo, Teppo, Kaakinen, Marika, Sovio, Ulla, Ruokonen, Aimo, Laitinen, Jaana, Jakkula, Eveliina, Coin, Lachlan, Hoggart, Clive, Collins, Andrew, Turunen, Hannu, Gabriel, Stacey, Elliot, Paul, McCarthy, Mark I., Daly, Mark J., Jarvelin, Marjo-Riitta, Freimer, Nelson B. and Peltonen, Leena (2009) Genome-wide association analysis of metabolic traits in a birth cohort from a founder population. Nature Genetics, 41 1: 35-46. doi:10.1038/ng.271

  • Meyre, David, Delplanque, Jerome, Chevre, Jean-Claude, Lecoeur, Cecile, Lobbens, Stephane, Gallina, Sophie, Durand, Emmanuelle, Vatin, Vincent, Degraeve, Franck, Proenca, Christine, Gaget, Stefan, Korner, Antje, Kovacs, Peter, Kiess, Wieland, Tichet, Jean, Marre, Michel, Hartikainen, Anna-Liisa, Horber, Fritz, Potoczna, Natascha, Hercberg, Serge, Levy-Marchal, Claire, Pattou, Francois, Heude, Barbara, Tauber, Maithe´, McCarthy, Mark I., Blakemore, Alexandra I. F., Montpetit, Alexandre, Polychronakos, Constantin, Weill, Jacques, Coin, Lachlan J. M., Asher, Julian, Elliott, Paul, Jarvelin, Marjo-Riitta, Visvikis-Siest, Sophie, Balkau, Beverley, Sladek, Rob, Balding, David, Walley, Andrew, Dina, Christian and Froguel, Philippe (2009) Genome-wide association study for early-onset and morbid adult obesity identifies three new risk loci in European populations. Nature Genetics, 41 2: 157-159. doi:10.1038/ng.301

  • Willer, Cristen J., Speliotes, Elizabeth K., Loos, Ruth J. F., Li, Shengxu, Lindgren, Cecilia M., Heid, Iris M., Berndt, Sonja I., Elliot, Amanda L., Jackson, Anne U., Lamina, Claudia, Lettre, Guillaume, Lim, Noha, Lyon, Helen N., McCarroll, Steven N., Papadakis, Konstantinos, Qi, Lu, Randall, Joshua C., Roccasecca, Rosa Maria, Sanna, Serena, Scheet, Paul, Weedon, Michael N., Wheeler, Eleanor, Zhao, Jing Hua, Jacobs, Leonie C., Prokopenko,, Soranzo, Nicole, Tanaka, Toshiko, Timpson, Nicholas J., Almgran, Peter, Bennett, Amanda, Bergman, Richard N., Bingham, Sheila A., Bonnycastle, Lori L., Brown, Morris, Bertt, Noel P., Chines, Peter, Coin, Lachlan, Collins, Frances S., Connell, John M., Cooper, Cyrus, Smith, George Davey, Dennison, Elaine M., Deodhar, Parimal, Elliott, Paul, Erdos, Michael R., Estrada, Karol, Evans, David M., Gianniny, Lauren, Gieger, Christian, Gillson, Christopher J., Guiducci, Candace, Hackett, Rachel, Hadley, David, Hall, Alistair S., Havulinna, Aki S., Hebebrand, Johannes, Hofman, Albert, Isomaa, Bo, Jacobs, Kevin B., Johnson, Toby, Jousilahti, Pekka, Jovanovic, Zorica, Kaw, Kay-Tee, Kraft, Peter, Kuokkanen, Mikko, Kuusisto, Johanna, Laitinen, Jaana, Lakatta, Edward G., Luan, Jian'an, Luben, Robert N., Mangino, Massimo, McArdle, Wendy L., Meitinger, Thomas, Mulas, Antonella, Munroe, Patricia B., Narisu, Narisu, Ness, Andrew R., Northstone, Kate, O'Rahilly, Stephenen, Purmann, Carolin, Rees, Matthew G., Ridderstråle, Martin, Ring, Susan M., Rivadeneira, Fernando, Ruokonen, Aimo, Sandhu, Manjinder, Saramies, Jouko, Scott, Laura J., Scuteri, Angelo, Silander, Kaisa, Sims, Matthew A., Song, Kijoung, Stephens, Jonathan, Stevens, Suzanne, Stringham, Heather M., Tung, Y. C. Loraine, Valle, Timo T., Van Duijn, Cornelia M., Vimaleswaran, Karani, Vollenweider, Peter, Waeber, Gerard, Wallace, Chris, Watanabe, Richard, Waterworth, Dawn M., Watkins, Nicholas, Wittemann, Jacqueline, Zeggini, Eleftheria, Zhai, Guangju, Zillikens, M. Carola, Altshuler, David, Caulfield, Mark J., Chanock, Stephen J., Farooqi, I. Sadaf, Ferrucci, Luigi, Guralnik, Jack M., Hattersley, Andrew T, Hu, Frank B., Jarvelin, Marjo-Riitta, Laakso, Markku, Mooser, Vincent, Ong, Ken K., Ouwehand, Willem H., Salomaa, Veikko, Samani, Nilesh, Spector, Timothy D., Tuomi, Tiinamaija, Tuomilehto, Jaakko, Uda, Manuela, Uitterlinden, Andre G., Wareham, Nicholas J., Deloukas, Panagiotis, Frayling, Timothy M., Groop, Leif C., Hayes, Richard B., Hunter, David J., Mohlke, Karen L., Peltonen, Leena, Schlessinger, David, Strachan, David P., Wichmann, H. Erich, McCarthy, Mark I., Boehnke, Michael, Barroso, Ines, Abecasis, Goncalo, Hirschhorn, Joel N., Bradbury, Linda M., Brown, Matthew A. and GIANT consortium (2009) Six new loci associated with body mass index highlight a neuronal influence on body weight regulation. Nature Genetics, 41 1: 25-34. doi:10.1038/ng.287

  • Prokopenko, Inga, Langenberg, Claudia, Florez, Jose C., Saxena, Richa, Soranzo, Nicole, Thorleifsson, Gudmar, Loos, Ruth J. F., Manning, Alisa K., Jackson, Anne U., Aulchenko, Yurii, Potter, Simon C., Erdos, Michael R., Sanna, Serena, Hottenga, Jouke-Jan, Wheeler, Eleanor, Kaakinen, Marika, Lyssenko, Valeriya, Chen, Wei-Min, Ahmadi, Kourosh, Beckmann, Jacques S., Bergman, Richard N., Bochud, Murielle, Bonnycastle, Lori L., Buchanan, Thomas A., Cao, Antonio, Cervino, Alessandra, Coin, Lachlan, Collins, Francis S., Crisponi, Laura, De Geus, Eco J. C., Dehghan, Abbas, Deloukas, Panos, Doney, Alex S. F., Elliott, Paul, Freimer, Nelson, Gateva, Vesela, Herder, Christian, Hofman, Albert, Hughes, Thomas E., Hunt, Sarah, Illig, Thomas, Inouye, Michael, Isomaa, Bo, Johnson, Toby, Kong, Augustine, Krestyaninova, Maria, Kuusisto, Johanna, Laakso, Markku, Lim, Noha, Lindblad, Ulf, Lindgren, Cecilia M., McCann, Owen T., Mohlke, Karen L., Morris, Andrew D., Naitza, Silvia, Orru, Marco, Palmer, Colin N. A., Pouta, Anneli, Randall, Joshua, Rathmann, Wolfgang, Saramies, Jouko, Scheet, Paul, Scott, Laura J., Scuteri, Angelo, Sharp, Stephen, Sijbrands, Eric, Smit, Jan H., Song, Kijoung, Steinthorsdottir, Valgerdur, Stringham, Heather M., Tuomi, Tiinamaija, Tuomilehto, Jaakko, Uitterlinden, Andre G., Voight, Benjamin F., Waterworth, Dawn, Wichmann, H-Erich, Willemsen, Gonneke, Witteman, Jacqueline C. M., Yuan, Xin, Zhao, Jing Hua, Zeggini, Eleftheria, Schlessinger, David, Sandhu, Manjinder, Boomsma, Dorret I., Uda, Manuela, Spector, Tim D., Penninx, Brenda W. J. H., Altshuler, David, Vollenweider, Peter, Jarvelin, Marjo Riitta, Lakatta, Edward, Waeber, Gerard, Fox, Caroline S., Peltonen, Leena, Groop, Leif C., Mooser, Vincent, Cupples, L. Adrienne, Thorsteinsdottir, Unnur, Boehnke, Michael, Barroso, Ines, Van Duijn, Cornelia, Dupuis, Josee, Watanabe, Richard M., Stefansson, Kari, McCarthy, Mark I., Wareham, Nicholas J., Meigs, James B. and Abecasis, Goncalo R. (2009) Variants in MTNR1B influence fasting glucose levels. Nature Genetics, 41 1: 77-81. doi:10.1038/ng.290

  • Su, Shu-Yi, White, Jonathan, Balding, David J. and Coin, Lachlan J. M. (2008) Inference of haplotypic phase and missing genotypes in polyploid organisms and variable copy number genomic regions. BMC Bioinformatics, 9 513.1-513.9. doi:10.1186/1471-2105-9-513

  • de Smith, Adam J., Walters, Robin G., Coin, Lachlan J. M., Steinfeld, Israel, Yakhini, Zohar, Sladek, Rob, Froguel, Philippe and Blakemore, Alexandra I. F. (2008) Small deletion variants have stable breakpoints commonly associated with Alu elements. PLoS ONE, 3 8: e3104.1-e3104.11. doi:10.1371/journal.pone.0003104

  • Su, Shu-Yi, Balding, David J. and Coin, Lachlan J. M. (2008) Disease association tests by inferring ancestral haplotypes using a hidden markov model. Bioinformatics, 24 7: 972-978. doi:10.1093/bioinformatics/btn071

  • Li, Heng, Coghlan, Avril, Ruan, Jue, Coin, Lachlan James, Heriche, Jean-Karim, Osmotherly, Lara, Li, Ruiqiang, Liu, Tao, Zhang, Zhang, Bolund, Lars, Wong, Gane Ka-Shu, Zheng, Weimou, Dehal, Paramvir, Wang, Jun and Durbin, Richard (2006) TreeFam: a curated database of phylogenetic trees of animal gene families. Nucleic Acids Research, 34 D572-D580. doi:10.1093/nar/gkj118

  • Goeb, J, Leblanc-Deshayes, M, Coin, L, Malka, J, Bouderlique, C and Duverger, R (2004) Neonatal death of a newborn twin. Archives De Pediatrie, 11 9: 1135-1138. doi:10.1016/S0929-693X(04)00061-2

  • Coin L., Bateman A. and Durbin R. (2004) Enhanced protein domain discovery using taxonomy. BMC Bioinformatics, 5 . doi:10.1186/1471-2105-5-56

  • Futreal, PA, Coin, L, Marshall, M, Down, T, Hubbard, T, Wooster, R, Rahman, N and Stratton, MR (2004) A census of human cancer genes. Nature Reviews Cancer, 4 3: 177-183. doi:10.1038/nrc1299

  • Coin, L. and Durbin, R. (2004) Improved techniques for the identification of pseudogenes. Bioinformatics, 20 SUPPL. 1: 94-100. doi:10.1093/bioinformatics/bth942

  • Bateman, A, Coin, L, Durbin, R, Finn, RD, Hollich, V, Griffiths-Jones, S, Khanna, A, Marshall, M, Moxon, S, Sonnhammer, ELL, Studholme, DJ, Yeats, C and Eddy, SR (2004) The Pfam protein families database. Nucleic Acids Research, 32 D138-D141. doi:10.1093/nar/gkh121

  • Coin, Lachlan, Bateman, Alex and Durbin, Richard (2003) Enhanced protein domain discovery by using language modeling techniques from speech recognition. Proceedings of the National Academy of Sciences of the United States of America, 100 8: 4516-4520. doi:10.1073/pnas.0737502100

Conference Publication

Other Outputs

Grants (Administered at UQ)

PhD and MPhil Supervision

Current Supervision

  • Doctor Philosophy — Principal Advisor

  • Doctor Philosophy — Principal Advisor

  • Doctor Philosophy — Principal Advisor

  • Doctor Philosophy — Principal Advisor

  • Doctor Philosophy — Principal Advisor

  • Doctor Philosophy — Associate Advisor

  • Doctor Philosophy — Associate Advisor

Completed Supervision