The University of Queensland

Phylogenomics reveals extreme gene tree discordance in a lineage of dominant trees: hybridization, introgression, and incomplete lineage sorting blur deep evolutionary relationships despite clear species groupings in Eucalyptus subgenus Eudesmia

McLay, Todd G.B., Fowler, Rachael M., Fahey, Patrick S., Murphy, Daniel J., Udovicic, Frank, Cantrill, David J. and Bayly, Michael J. (2023). Phylogenomics reveals extreme gene tree discordance in a lineage of dominant trees: hybridization, introgression, and incomplete lineage sorting blur deep evolutionary relationships despite clear species groupings in Eucalyptus subgenus Eudesmia. Molecular Phylogenetics and Evolution, 187 107869, 107869. doi: 10.1016/j.ympev.2023.107869

Maintaining separate maternal lines increases the value and applications of seed collections

van der Merwe, Marlien M., Bragg, Jason G., Dimon, Richard, Fahey, Patrick S., Hogbin, Patricia M., Lu-Irving, Patricia, Mertin, Allison A., Rossetto, Maurizio, Wilson, Trevor C. and Yap, Jia-Yee Samantha (2023). Maintaining separate maternal lines increases the value and applications of seed collections. Australian Journal of Botany, 71 (7), 406-419. doi: 10.1071/bt22136

Phylogeography and classification of Dusty Miller (Spyridium parvifolium; Rhamnaceae): a morphologically variable shrub from south-east Australia

Clowes, Catherine, Fowler, Rachael, Fahey, Patrick, Kellermann, Jürgen, Brown, Gillian and Bayly, Michael (2023). Phylogeography and classification of Dusty Miller (Spyridium parvifolium; Rhamnaceae): a morphologically variable shrub from south-east Australia. Plant Systematics and Evolution, 309 (3) 15. doi: 10.1007/s00606-023-01851-5

A box on the river: The phylogenetics and phylogeography of Eucalyptus baueriana (Eucalyptus sect. Adnataria ser. Heterophloiae)

Fahey, Patrick S., Udovicic, Frank, Cantrill, David J. and Bayly, Michael J. (2022). A box on the river: The phylogenetics and phylogeography of Eucalyptus baueriana (Eucalyptus sect. Adnataria ser. Heterophloiae). PLoS One, 17 (11) e0276117, 1-24. doi: 10.1371/journal.pone.0276117

A phylogenetic investigation of the taxonomically problematic Eucalyptus odorata complex (E. section Adnataria series Subbuxeales): evidence for extensive interspecific gene flow and reticulate evolution

Fahey, Patrick S., Udovicic, Frank, Cantrill, David J., Nicolle, Dean, McLay, Todd G. B. and Bayly, Michael J. (2022). A phylogenetic investigation of the taxonomically problematic Eucalyptus odorata complex (E. section Adnataria series Subbuxeales): evidence for extensive interspecific gene flow and reticulate evolution. Australian Systematic Botany, 35 (5), 403-435. doi: 10.1071/sb21029

Big trees of small baskets: phylogeny of the Australian genus Spyridium (Rhamnaceae: Pomaderreae), focusing on biogeographic patterns and species circumscriptions

Clowes, Catherine, Fowler, Rachael M., Fahey, Patrick S., Kellermann, Jurgen, Brown, Gillian K. and Bayly, Michael J. (2022). Big trees of small baskets: phylogeny of the Australian genus Spyridium (Rhamnaceae: Pomaderreae), focusing on biogeographic patterns and species circumscriptions. Australian Systematic Botany, 35 (2), 95-119. doi: 10.1071/sb21034

Use of plastid genome sequences in phylogeographic studies of tree species can be misleading without comprehensive sampling of co-occurring, related species

Fahey, Patrick S., Fowler, Rachael M., Udovicic, Frank, Cantrill, David J. and Bayly, Michael J. (2021). Use of plastid genome sequences in phylogeographic studies of tree species can be misleading without comprehensive sampling of co-occurring, related species. Tree Genetics and Genomes, 17 (6) 43, 1-14. doi: 10.1007/s11295-021-01524-9

Divergent lineages in a semi‐arid mallee species, Eucalyptus behriana, correspond to a major geographic break in southeastern Australia

Fahey, Patrick S., Fowler, Rachael M., McLay, Todd G. B., Udovicic, Frank, Cantrill, David J. and Bayly, Michael J. (2020). Divergent lineages in a semi‐arid mallee species, Eucalyptus behriana, correspond to a major geographic break in southeastern Australia. Ecology and Evolution, 11 (1), 664-678. doi: 10.1002/ece3.7099

The complete chloroplast genome sequence of the Australian Mirbelioid pea Platylobium obtusangulum Hook. (Leguminosae: subf. Papilionoideae, tribe Bossiaeeae)

Orel, Harvey K., Fahey, Patrick S., Fowler, Rachael M. and Bayly, Michael J. (2019). The complete chloroplast genome sequence of the Australian Mirbelioid pea Platylobium obtusangulum Hook. (Leguminosae: subf. Papilionoideae, tribe Bossiaeeae). Mitochondrial DNA Part B. Resources, 4 (2), 3618-3620. doi: 10.1080/23802359.2019.1677187

Chloris circumfontinalis (Poaceae): A recently discovered species from the saline scalds surrounding artesian springs in north-eastern Australia

Fahey, Patrick S., Fensham, Roderick J., Laffineur, Boris and Cook, Lyn G. (2019). Chloris circumfontinalis (Poaceae): A recently discovered species from the saline scalds surrounding artesian springs in north-eastern Australia. Australian Systematic Botany, 32 (1), 228-242. doi: 10.1071/SB18017

SNP datasets used in the paper "Floristic classification is not a predictor of species-specific evolutionary patterns.

Fahey, Patrick, Rossetto, Maurizio and Dimon, Richard (2023). SNP datasets used in the paper "Floristic classification is not a predictor of species-specific evolutionary patterns.. The University of Queensland. (Dataset) doi: 10.48610/5c76de2