Associate Professor Olivier Salvado

Adjunct Associate Professor

School of Information Technology and Electrical Engineering
Faculty of Engineering, Architecture and Information Technology

Adjunct Associate Professor

UQ Centre for Clinical Research
Faculty of Medicine

Overview

Dr Salvado is leading the CSIRO Biomedical Informatics Group part CSIRO Health (~20 FTE + ~15 students), at the Australian eHealth Research Centre, a joint venture between CSIRO and Queensland Health. He is adjunct Professor at the University of Canberra, adjunct Associate Professor at the University of Queensland, and Honorary Research Fellow at the Florey Neuroscience Institute. His research interests include developing bio-informatics methods for large multi-scale clinical studies, Neuroimaging technologies, and investigating novel multi-modal clinical imaging biomarkers. Since 2009, he has been co-supervisor or assessor of 10 PhD students (2 current co-supervisions).

Research Interests

  • Biomarkers for large clinical studies and diagnosis
    My research focuses on mining and understanding medical data to better understand healthy ageing and disease evolution to develop new software tools for improved and early diagnosis. My background is in medical imaging (MRI, PET, CT,...) and I am involved in many large clinical studies to link genetic background, environmental factors and phenotypes measured from imaging and body fluids (blood, CSF,...)

Research Impacts

Dr Salvado has published over 80 original research papers cited more than 3600 times in highly-regarding journals including Lancet Neurology, JAMIA, Journal of Neuroscience, NeuroImage, PLoS One, Annals of neurology, and Brain. He has been a co-investigator in 11 scientific grants (NHMRC, ARC,...) with a total value in excess of $10M. Dr Salvado is often invited to give lectures and seminars and his Group’s work received press coverage in The Australian, ABC Big Idea, news.com.au, and other media. He is a regular assessor for the NHMRC, ARC, and other funding bodies. Dr Salvado is associate editor for the Journal of Medical Imaging, in the program committee of the SPIE Medical Imaging conference since 2007, MICCAI 2015, and a regular reviewer of several leading journals and conferences including IEEE Transaction in Medical imaging, Neuroimage, IEEE Transaction in Biomedical Engineering, MICCAI, SPIE, ISBI, and EMBS. Dr Salvado is the co-chair of the ISBI conference that will take place in Melbourne, Australia in 2017.

The Biomedical Informatics Group has developped over the years software paltforms that are used by a large number of researchers and cinical collaborators. For example MILXcloud provides clinical reports to analyse PET and MRI images, SMILI is a light weigth viewer of medical images, MILXxplore is an open source framework to publish web reports of clinical studies.

Publications

  • Dowson, Nicholas, Baker, Charles, Thomas, Paul, Smith, Jye, Puttick, Simon, Bell, Christopher, Salvado, Olivier and Rose, Stephen (2017) Federated optimisation of kinetic analysis problems. Medical Image Analysis, 35 116-132. doi:10.1016/j.media.2016.06.019

  • Kerbler, Georg M., Fripp, Jürgen, Rowe, Christopher C., Villemagne, Victor L., Salvado, Olivier, Rose, Stephen, Coulson, Elizabeth J. and Alzheimer's Disease Neuroimaging Initiative (2015) Basal forebrain atrophy correlates with amyloid beta burden in Alzheimer's disease. NeuroImage: Clinical, 7 105-113. doi:10.1016/j.nicl.2014.11.015

  • Shen, Kai-Kai, Rose, Stephen, Fripp, Jurgen, McMahon, Katie L., de Zubicaray, Greig I., Martin, Nicholas G., Thompson, Paul M., Wright, Margaret J. and Salvado, Olivier (2014) Investigating brain connectivity heritability in a twin study using diffusion imaging data. Neuroimage, 100 628-641. doi:10.1016/j.neuroimage.2014.06.041

View all Publications

Publications

Journal Article

Conference Publication

  • Dowson, Nicholas, Thomas, Paul, Gal, Yaniv, Fay, Michael, Jeffree, Rosalind L., Winter, Craig, Coulthard, Alan, Smith, Jye, Bourgeat, Pierrick, Salvado, Olivier, Crozier, Stuart and Rose, Stephen (2014). Assessing local outcomes in heterogeneous gliomas. In: Proceedings of the 17th International Conference on the Use of Computers in Radiation Therapy, ICCR 2013. 17th International Conference on the Use of Computers in Radiation Therapy (ICCR 2013), Melbourne, Australia, (). 6-9 May 2013. doi:10.1088/1742-6596/489/1/012073

  • Dowson, Nicholas, Fay, Michael, Thomas, Paul, Jeffree, Rosalind, McDowall, Robert, Winter, Craig, Coulthard, Alan, Smith, Jye, Gal, Yaniv, Bourgeat, Pierrick, Salvado, Olivier, Crozier S. and Rose, Stephen (2014). Contribution of FDOPA PET to radiotherapy planning for advanced glioma. In: Proceedings of the 17th International Conference on the Use of Computers in Radiation Therapy, ICCR 2013. 17th International Conference on the Use of Computers in Radiation Therapy (ICCR 2013), Melbourne, Australia, (). 6-9 May 2013. doi:10.1088/1742-6596/489/1/012028

  • Mitra, J., Carey, L., Fripp, J., Shen, K., Pannek, K., Bourgeat, P., Salvado, O., Campbell, B., Connelly, A., Palmer, S. and Rose, S. (2014). Predicting poststroke depression from structural brain connectivity. In: 25th Annual Scientific Meeting of the Stroke Society of Australasia, Hamilton Island, Australia, (44-44). 30 July-1 August 2014. doi:10.1111/ijs.12298

  • Yates, P., Szoeke, C., Desmond, P., Villemagne, V., Phal, P., Steward, C., Salvado, O., Martins, R., Masters, C., Ames, D., Ellis, K. and Rowe, C. (2013). Cerebral microbleeds, brain beta-amyloid and clinical trajectories: results from the AIBL study of ageing. In: Special Issue: Abstracts of The Australian and New Zealand Society for Geriatric Medicine Annual Scientific Meeting. The Australian and New Zealand Society for Geriatric Medicine Annual Scientific Meeting, Adelaide, SA, Australia, (7-8). 17-19 June 2013. doi:10.1111/ajag.12078

  • Dore, Vincent, Bourgeat, Pierrick, Fripp, Jurgen, Acosta, Oscar, Chetelat, Gael, Szoeke, Cassandra, Ellis, Kathryn A., Martins, Ralph N., Villemagne, Victor, Masters, Colin L., Ames, David, Rowe, Christopher C. and Salvado, Olivier (2012). A surface based approach for cortical thickness comparison between PiB plus and PiB- Healthy Control subjects. In: David R. Haynor and Sebastien Ourselin, Medical Imaging 2012: Image Processing. Conference on Medical Imaging - Image Processing, San Diego Ca, (831413-1-831413-6). 6-9 February 2012. doi:10.1117/12.911752

  • Xia, Ying, Chandra, Shakes, Salvado, Oliver, Fripp, Jurgen, Schwartz, Raphael, Lauer, Lars, Engstrom, Craig M. and Crozier, Stuart (2012). Automated bone segmentation and bone-cartilage interface extraction from MR images of the hip. In: ISMRM 20th Annual Meeting & Exhibition: Adapting MRI in a Changing World. International Society for Magnetic Resonance in Medicine, Melbourme, VIC, Australia, (). 5-11 May 2012.

  • Shen, Kaikai, Bourgeat, Pierrick, Fripp, Jurgen, Meriaudeau, Fabrice and Salvado, Olivier (2012). Consistent estimation of shape parameters in statistical shape model by symmetric EM algorithm. In: David R. Haynor and Sebastien Ourselin, Medical Imaging 2012: Image Processing. Conference on Medical Imaging - Image Processing, San Diego Ca, (83140R-1-83140R-8). 06-09 February 2012. doi:10.1117/12.911746

  • Rowe, C. C., Ellis, K., Brown, B., Bourgeat, P., Jones, G., Salvado, O., Martins, R., Masters, C. L., Ames, D. and Villemagne, V. L. (2012). Imaging and cognitive biomarkers as predictors of progression to Alzheimer'S Disease. In: Special Issue: 42nd Annual Scientific Meeting of the Australian and New Zealand Society of Nuclear Medicine (ANZSNM). 42nd Annual Scientific Meeting of the Australian and New Zealand Society of Nuclear Medicine (ANZSNM), Melbourne, Vic., Australia, (13-13). 28-30 April 2012. doi:10.1111/j.1445-5994.2012.02872.x

  • Yates, P., Desmond, P., Raniga, P., Phal, P., Steward, C., Ellis, K., Salvado, O., Masters, C. L., Villemagne, V. L. and Rowe, C. C. (2012). Incidence and Associations of Lobar Microbleeds: Results From the Australian Imaging, Biomarkers and Lifestyle Study of Ageing (Aibl). In: Special Issue: 42nd Annual Scientific Meeting of the Australian and New Zealand Society of Nuclear Medicine (ANZSNM). 42nd Annual Scientific Meeting of the Australian and New Zealand Society of Nuclear Medicine (ANZSNM), Melbourne, Vic., Australia, (33-33). 28-30 April 2012. doi:10.1111/j.1445-5994.2012.02873.x

  • Yates, P. A., Desmond, P. M., Raniga, P., Phal, P. M., Steward, C., Salinas, S., Salvado, O., Martins, R., Ellis, K. A., Szoeke, C., Masters, C. L., Ames, D. A., Villemagne, V. L., Rowe, C. and AIBL Res Grp (2012). Incidence and associations of lobar microbleeds: Results from the Australian imaging, biomarkers and lifestyle study of Ageing (AIBL). In: Australasian Journal On Ageing. unknown, unknown, (29-29). unknown.

  • Yang, Zhengyi, Crozier, Stuart, Engstrom, Craig, Xia, Ying, Neubert, Ales, Brancato, Tania, Schwarz, Raphael, Lauer, Lars, Fripp, Jurgen, Chandra, Shekhar and Salvado, Olivier (2012). Morphology-based interslice interpolation on manual segmentations of joint bones and muscles in MRI. In: 2012 International Conference on Digital Image Computing Techniques and Applications (DICTA). 2012 International Conference on Digital Image Computing Techniques and Applications (DICTA), Fremantle, WA, Australia, (). 3-5 December 2012. doi:10.1109/DICTA.2012.6411678

  • Whelan, B., Kumar, S., Dowling, J., Lambert, J., Lim, K., Salvado, O., Begg, J., Greer, P., Vinod, S. and Holloway, L. (2012). Requirements for the accuracy of electron density data planning for MRI based cervix cancer treatment planning. In: Abstracts of the 54th Annual Meeting of the American Association of Physicists in Medicine. 54th Annual Meeting and Exhibition of the American Association of Physicists in Medicine (AAPM), Charlotte, NC, United States, (3694-3694). 29July-02 August 2012. doi:10.1118/1.4735020

  • Chandra, Shekhar, Xia, Yinq, Engstrom, Craig, Schwarz, Raphael, Lauer, Lars, Crozier, Stuart, Salvado, Olivier and Fripp, Jurgen (2012). Unilateral hip joint segmentation with shape priors learned from missing data. In: 2012 9th IEEE International Symposium On Biomedical Imaging (ISBI). 9th IEEE International Symposium on Biomedical Imaging (ISBI), Barcelona, Spain, (1711-1714). 2-5 March 2012. doi:10.1109/ISBI.2012.6235909

  • Raffelt, David, Tournier, J-Donald, Crozier, Stuart, Ellis, Kathryn, Martins, Ralph, Villmagne, Victor L., Masters, Colin L., Ames, David, Rowe, Christopher C., Salvado, Oliver and Connelly, Alan (2012). Voxel-based analysis of Alzheimer's Disease using apparent fibre density. In: ISMRM 20th Annual Meeting, Melbourne Australia, (). 5-11 May 2012.

  • Villemagne, V, Ellis, K, Chetelat, G, Bourgeat, P, Jones, G, Martins, R, Salvado, O, Ames, D, Masters, C and Rowe, C (2011). A beta ACCUMULATION CORRELATES WITH COGNITIVE DECLINE: RESULTS FROM THE AIBL LONGITUDINAL STUDY. In: Internal Medicine Journal. Unknown, unknown, (39-39). unknown.

  • Xiao, Di, Zahra, Pierrick, Bourgeat, Pierrick, Berghofer, Paula, Acasto Tamayo, Oscar, Wimberley, Catriona, Gregoire, Marie Claude and Salvado, Olivier (2011). An accurate 3D shape context based non-rigid registration method for mouse whole-body skeleton registration. In: Benoit M. Dawant and David R. Haynor, Proceedings of SPIE - Progress in Biomedical Optics and Imaging, Medical Imaging 2011: Image Processing. Conference on Medical Imaging 2011: Image Processing, Lake Buena Vista, FL, United States, (79620V.1-79620V.10). 14-16 February 2011. doi:10.1117/12.877915

  • Shen, Kaikai, Bourgeat, Pierrick, Meriaudeau, Fabrice, Salvado, Olivier and Alzheimer’s Disease Neuroimaging Initiative (2011). Atlas selection strategy in multi-atlas segmentation propagation with locally weighted voting using diversity-based MMR re-ranking. In: Benoit M. Dawant and David R. Haynor, Proceedings of SPIE - Progress in Biomedical Optics and Imaging, Medical Imaging 2011: Image Processing. Conference on Medical Imaging 2011: Image Processing, Lake Buena Vista, FL, United States, (79621B.1-79621B.6). 14-16 February 2011. doi:10.1117/12.877866

  • Shen, Kaikai, Bourgeat, Pierrick, Dowson, Nicholas, Meriaudeau, Fabrice, Salvado, Olivier and Alzheimer’s Disease Neuroimaging Initiative (2011). Atlas selection strategy using least angle regression in multi-atlas segmentation propagation. In: 2011 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings. 8th International Symposium on Biomedical Imaging (ISBI’11), Chicago, IL, United States, (1746-1749). 30 March - 2 April 2011. doi:10.1109/ISBI.2011.5872743

  • Shen, Kaikai, Bourgeat, Pierrick, Fripp, Jurgen, Meriaudeau, Fabrice, Salvado, Olivier and Alzheimer’s Disease Neuroimaging Initiative (2011). Detecting hippocampal shape changes in Alzheimer's disease using statistical shape models. In: Benoit M. Dawant and David R. Haynor, Proceedings of SPIE - Progress in Biomedical Optics and Imaging, Medical Imaging 2011: Image Processing. Conference on Medical Imaging 2011: Image Processing, Lake Buena Vista, FL, United States, (796243.1-796243.7). 14-16 February 2011. doi:10.1117/12.877869

  • Dowling, Jason A., Fripp, Jurgen, Chandra, Shekhar, Pluim, Josien P. W., Lambert, Jonathan, Parker, Joel, Denham, James, Greer, Peter B. and Salvado, Olivier (2011). Fast automatic multi-atlas segmentation of the prostate from 3D MR images. In: Prostate Cancer Imaging: Image Analysis and Image-Guided Interventions. 14th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI 2011), Toronto, Canada, (10-21). 18-22 September 2011. doi:10.1007/978-3-642-23944-1_2

  • Raniga, Parnesh, Schmitt, Pierre, Bourgeat, Pierrick, Fripp, Jurgen, Villemagne, Victor L., Rowe, Christopher C. and Salvado, Olivier (2011). Local intensity model: An outlier detection framework with applications to white matter hyperintensity segmentation. In: 2011 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings. 8th International Symposium on Biomedical Imaging (ISBI’11), Chicago, IL, United States, (2057-2060). 30 March - 2 April 2011. doi:10.1109/ISBI.2011.5872817

  • Xiao, Di, Zahra, David, Bourgeat, Pierrick, Berghofer, Paula, Tamayo, Oscar Acosta, Green, Heather, Gregoire, Marie Claude and Salvado, Olivier (2011). Mouse whole-body organ mapping by non-rigid registration approach. In: Proceedings of SPIE: Progress in Biomedical Optics and Imaging. Medical Imaging 2011 - Biomedical Applications in Molecular, Structural, and Functional Imaging, Florida, United States, (79650E.1-79650E.7). 13-16 February 2011. doi:10.1117/12.877921

  • Nguyen, P, Bashirzadeh, F, Masters, IB, Salvado, O, Dowson, N and Fielding, D (2011). Optical Differentiation of Malignant and Benign Lymphadenopathy by Grey Scale Texture Analysis of Endobroncial Ultrasound Covex Probe Images. In: Journal of Thoracic Oncology. unknown, unknown, (S5-S6). unknown.

  • Rowe, C, Ellis, K, Brown, B, Bourgeat, P, Jones, G, Salvado, O, Martins, R, Masters, C, Ames, D and Villemagne, V (2011). THE CONSEQUENCES OF A beta DEPOSITION IN AGEING AND ALZHEIMER'S DISEASE: RESULTS FROM 366 ELDERLY SUBJECTS. In: Internal Medicine Journal. Unknown, unknown, (39-39). unknown.

  • Acosta, Oscar, Fripp, Jurgen, Rueda, Andrea, Xiao, Di, Bonner, Erik, Bourgeat, Pierrick and Salvado, Olivier (2010). 3D shape context surface registration for cortical mapping. In: 2010 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro. Proceedings. 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Rotterdam, Netherlands, (1021-1024). 14-17 April 2010. doi:10.1109/ISBI.2010.5490163

  • Raniga, P., Pannek, K., Fripp, J., Raffelt, D., Bourgeat, P., Acosta. O., Tournier, D., Connelly, A., Rose, S. E. and Salvado, O. (2010). A Monte-Carlo approach for estimating white matter density in HARDI diffusion data. In: Daniel K. Sodickson, Proceedings of the International Society for Magnetic Resonance in Medicine. Joint Annual Meeting ISMRM-ESMRMB 2010. ISMRM, Stockholm , Sweden, (). 1-7 May, 2010.

  • Gris, Florence, Favreau, Jean-Marie, Acosta, Oscar, Barra, Vincent and Salvado, Olivier (2010). A combined voxel and surface based method for topology correction of brain surfaces. In: Progress in Biomedical Optics and Imaging: Proceedings of SPIE, Volume 7623. Conference on Medical Imaging 2010 - Image Processing, San Diego, CA, United States, (76234T-1-76234T-12). 14-16 February 2010. doi:10.1117/12.844624

  • Xiao, Di, Zahra, David, Bourgeat, Pierrick, Berghofer, Paula, Tamayo, Oscar, Wimberley, Catriona, Gregoire, Marie Claude and Salvado, Olivier (2010). A non-rigid registration method for mouse whole body skeleton registration. In: Robert C. Molthen and John B. Weaver, Progress in Biomedical Optics and Imaging: Proceedings of SPIE, Volume 7626. Conference on Medical Imaging 2010 - Biomedical Applications in Molecular, Structural, and Functional Imaging, San Diego, CA, United States, (76261N-1-76261N-9). 14-16 February 2010. doi:10.1117/12.844067

  • Xiao, Di, Bourgeat, Pierrick, Tamayo, Oscar Acosta, Salvado, Oliver, Zahra, David, Berghofer, Paula, Wimberley, Catriona and Gregoire, Marie-Claude (2010). An improved 3D shape context registration method for non-rigid surface registration. In: Benoit M. Dawant and David R. Haynor, Progress in Biomedical Optics and Imaging: Proceedings of SPIE, Volume 7623. Conference on Medical Imaging 2010 - Image Processing, San Diego, CA, United States, (76232Q-1-76232Q-9). 14-16 February 2010. doi:10.1117/12.844058

  • Raffelt, David, Crozier, Stuart, Connelly, Alan, Salvado, Oliver and Tournier, J-Donald (2010). Apparent fibre density: A new measure for high angular resolution diffusion-weighted image analysis. In: Daniel K. Sodickson, Proceedings of the International Society for Magnetic Resonance in Medicine. Joint Annual Meeting ISMRM-ESMRMB 2010. ISMRM, Stockholm, Sweden, (575-575). 1-7 May.

  • Acosta, Oscar, Dowling, Jason, Cazoulat, Guillaume, Simon, Antoine, Salvado, Olivier, de Crevoisier, Renaud and Haigron, Pascal (2010). Atlas based segmentation and mapping of organs at risk from planning CT for the development of voxel-wise predictive models of toxicity in prostate radiotherapy. In: Anant Madabhushi, Jason Dowling, PingkunYan, Aaron Fenster, Purang Abolmaesumi and Nobuhiko Hata, Prostate Cancer Imaging: Computer-Aided Diagnosis, Prognosis, and Intervention. International Workshop held in conjunction with MICCAI 2010: Proceedings. MICCAI 2010: The 13th International Conference on Medical Image Computing and Computer-Assisted Intervention. F-W8: International Workshop on Prostate Cancer Imaging, Beijing, China, (42-51). 24 September 2010. doi:10.1007/978-3-642-15989-3_6

  • Dowling, Jason, Lambert, Jonathan, Parker, Joel, Greer, Peter B., Fripp, Jurgen, Denham, James, Ourselin, Sebastien and Salvado, Olivier (2010). Automatic MRI atlas-based external beam radiation therapy treatment planning for prostate cancer. In: Anant Madabhushi, Jason Dowling, PingkunYan, Aaron Fenster, Purang Abolmaesumi and Nobuhiko Hata, Prostate Cancer Imaging: Computer-Aided Diagnosis, Prognosis, and Intervention International Workshop proceedings. International Workshop on Prostate Cancer Imaging: Computer-Aided Diagnosis, Prognosis, and Intervention Held in Conjunction with MICCAI 2010, Beijing, China, (25-33). 22-24 September 2010. doi:10.1007/978-3-642-15989-3_4

  • Dowson, Nicholas and Salvado, Olivier (2010). Compact rotation invariant descriptor for non-local means. In: Benoit M. Dawant and David R. Haynor, Progress in Biomedical Optics and Imaging: Proceedings of SPIE, Volume 7623. Conference on Medical Imaging 2010 - Image Processing, San Diego, CA, United States, (76233C-1-76233C-8). 14-16 February 2010. doi:10.1117/12.844088

  • Rose, S., Crozier, S., Bourgeat, P., Dowson, N., Salvado, O., Raniga, P., Pannek, K., Coulthard, A., Fay, M., Thomas, P. and MacFarlane, D. (2010). Improved delineation of brain tumour margins using whole-brain track-density mapping. In: Daniel K. Sodickson (Chair), ISMRM-ESMRMB Joint Annual Meeting 2010. ISMRM-ESMRMB Joint Annual Meeting 2010: Clinical Needs and Technological Solutions, Stockholm, Sweden, (). 1-7 May 2010.

  • Leung, Kelvin K., Shen, Kai-Kai, Barnes, Josephine, Ridgway, Gerard R., Clarkson, Matthew J., Fripp, Jurgen, Salvado, Olivier, Meriaudeau, Fabrice, Fox, Nick C., Bourgeat, Pierrick and Ourselin, Sebastien (2010). Increasing power to predict mild cognitive impairment conversion to Alzheimer's disease using hippocampal atrophy rate and statistical shape models. In: Tianzi Jiang, Nassir Navab, Josien P.W. Pluim and Max A. Viergever, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2010: 13th International Conference proceedings, part II. 13th International Conference on Medical Image Computing and Computer-Assisted Intervention, Beijing Peoples R China, (125-132). Sep 20-24, 2010. doi:10.1007/978-3-642-15745-5_16

  • Dowson, N., Bourgeat, P., Rose, S., Daglish, M., Smith, J., Fay, M., Coulthard A., Winter, C., MacFarlane, D., Thomas, P., Crozier, S. and Salvado, O. (2010). Joint factor and kinetic analysis of dynamic FDOPA PET scans of brain cancer patients. In: Tianzi Jiang, Nassir Navab, Josien P.W. Pluim and Max A. Viergever, Proceedings, Part 2. 13th International Conference on Medical Image Computing and Computer-Assisted Intervention. 13th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2010, Beijing, China, (185-192). 20 - 24 September 2010. doi:10.1007/978-3-642-15745-5_23

  • Burdett, Neil, Fripp, Jurgen, Bourgeat, Pierrick and Salvado, Olivier (2010). MILXView: A medical imaging, analysis and visualization platform. In: Hiroshi Takeda, E-Health: First IMIA/IFIP Joint Symposium, E-Health 2010, proceedings. 1st IMIA/IFIP Joint Symposium (E-Health 2010), held as part of WCC 2010, Brisbane, Australia, (177-186). Sep 20-23, 2010. doi:10.1007/978-3-642-15515-4_19

  • Shen, Kaikai, Bourgeat, Pierrick, Fripp, Jurgen, Meriaudeau, Fabrice, Ames, David, Ellis, Kathryn A., Masters, Colin L., Villemagne, Victor L, Rowe, Christopher C, and Salvado, Olivier (2010). Supervised method to build an atlas database for multi-atlas segmentation-propagation. In: Progress in Biomedical Optics and Imaging: Proceedings of SPIE, Volume 7624. Conference on Medical Imaging 2010 - Computer-Aided Diagnosis, San Diego, CA, United States, (76241N -1-76241N -8). 14-16 February 2010. doi:10.1117/12.844048

  • Raffelt, David A., Tournier, J.- Donald, Fripp, Jurgen, Connelly, Alan, Crozier, Stuart and Salvado, Oliver (2010). Symmetric diffeomorphic normalisation of fibre orientation distributions. In: ISMRM-ESMRMB Joint Annual Meeting 2010. ISMRM-ESMRMB Joint Annual Meeting 2010: Clinical Needs and Technological Solutions, Stockholm, Sweden, (). 1-7 May 2010.

  • Rose, Stephen, Pannek, Kerstin, Salvado, Oliver, Raniga, Parnesh, Baumann, Fusun and Henderson, Robert (2010). The FA connectome: A quantitative strategy for studying neurological disease processes. In: 18th International Society of Magnetic Resonance in Medicine (ISMRM) Scientific Meeting, Stockholm, Sweden, (). 1-7 May 2010.

  • Bonner, Erik, Acosta, Oscar, Fripp, Jurgen and Salvado, Olivier (2009). A quantitative comparison of three methods for inflating cortical meshes. In: 2009 6th IEEE International Symposium on Biomedical Imaging: From Nano to Macro: Proceedings. 2009 6th IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI 2009), Boston, MA, United States, (1338-1341). 28 June - 1 July 2009. doi:10.1109/ISBI.2009.5193312

  • Fripp, Jurgen, Bourgat, Pierrick, Engstrom, Craig, Ourselin, Sebastien, Crozier, Stuart and Salvado, Olivier (2009). Automated segmentation of the menisci from MR images. In: 2009 6th IEEE International Symposium on Biomedical Imaging: From Nano to Macro Proceedings. IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2009. ISBI '09, Boston, MA, USA, (510-513). 28 June - 1 July, 2009. doi:10.1109/ISBI.2009.5193096

  • Rueda, Andrea, Acosta, Oscar, Bourgeat, Pierrick, Fripp, Jurgen, Bonner, Erik, Dowson, Nicholas, Couprie, Michel, Romero, Eduardo and Salvado, Olivier (2009). Partial volume estimation of brain cortex from MRI using topology-corrected segmentation. In: 2009 6th IEEE International Symposium on Biomedical Imaging: From Nano to Macro: Proceedings. 6th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, United States, (133-136). 28 June -1 July 2009. doi:10.1109/ISBI.2009.5193001

  • Cheng, M., Passenger, J., Salvado, O., Riek, S., Ourselin, S. and Watson, M. (2009). Pneumatic haptic interface fuzzy controller for simulation of abdominal palpations during colonoscopy. In: World Haptics 2009: Third Joint Eurohaptics Conference and Symposium On Haptic Interfaces for Virtual Environment and Teleoperator Systems, Proceedings. 3rd Joint EuroHaptics Conference Symposium on Haptic Interfaces for Virtual Environment and Teleoperator Systems, Salt Lake City, UT, (250-255). 18-20 March 2009. doi:10.1109/WHC.2009.4810882

  • Jurcak,V., Fripp, J., Engstrom, C., Walker, D., Salvado, O., Ourselin, S. and Crozier, S. (2008). Atlas based automated segmentation of the quadratus lumborum muscle using non-rigid registration on magnetic resonance images of the thoracolumbar region. In: 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on Biomedical Imaging - From Nano to Macro, Paris, France, (113-116). 14-17 May 2008. doi:10.1109/ISBI.2008.4540945

  • Jurcak,V., Fripp, J., Engstrom, C., Walker, D., Salvado, O., Ourselin, S. and Crozier, S. (2008). Automated segmentation of the quadratus lumborum muscle from magnetic resonance images using a hybrid atlas based - geodesic active contour scheme. In: IEEE Engineering in Medicine and Biology Society Conference Proceedings, EMBS 2008. 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2008, Vancouver, Canada, (867-870). 20-25 Aug 2008. doi:10.1109/IEMBS.2008.4649291

  • Acosta, Oscar, Bourgeat, Pierrick, Fripp, Jurgen, Bonner, Erik, Ourselin, Sebastien and Salvado, Olivier (2008). Automatic delineation of sulci and improved partial volume classification for accurate 3D voxel-based cortical thickness estimation from MR. In: Dimitris Metaxas, Leon Axel, Gabor Fichtinger and Gabor Szekely, Medical Image Computing and Computer-Assisted Intervention – MICCAI 2008: 11th International Conference: Proceedings, Part I. 11th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI 2008), New York, United States, (253-261). 6-10 September 2008. doi:10.1007/978-3-540-85988-8_31

  • Zuluaga, Maria A., Acosta, Oscar, Bourgeat, Pierrick, Hoyos, Marcela Hernandez, Salvado, Olivier and Ourselin, Sebastien (2008). Cortical thickness measurement from magnetic resonance images using partial volume estimation. In: Joseph M. Reinhardt and Josien P. W. Pluim, Proceedings of SPIE: Medical Imaging 2008: Image processing. Medical Imaging 2008 Conference, San Diego, CA, United States, (69140J-1-69140J-8). 17-19 February 2008. doi:10.1117/12.770058

  • De Visser, Hans, Comas, Olivier, Conlan, David, Ourselin, Sebastien, Passenger, Josh and Salvado, Olivier (2008). Deforming a high-resolution mesh in real-time by mapping onto a low-resolution physical model. In: Fernando Bello and P. J. Eddie Edwards, Biomedical Simulation: 4th International Symposium (ISBMS 2008) proceedings. 4th International Symposium on Biomedical Simulation, London, United Kingdom, (135-146). 7-8 July 2008. doi:10.1007/978-3-540-70521-5_15

  • Passenger, J., de Visser, H., Comas, O., Conlan, D., Russ, C., Riek, S., Watson, M. and Salvado, O. (2008). GPU programming: New frontiers for surgical simulation. In: Walker, K., SimTecT 2008 Health Simulation Conference Proceedings. Simulation - Realising the Potential, Brisbane, (20). 8-11 September, 2008.

  • Fripp, J., Bourgeat, P., Acosta, O., Jones, G., Villemagne, V., Ourselin, S., Rowe, C. and Salvado, O. (2008). Generative atlases and atlas selection for C11-PIBPET-PET registration of elderly, mild cognitive impaired and Alzheimer disease patients. In: 2008 IEEE International Symposium On Biomedical Imaging: From nano to macro: Proceedings. 5th IEEE International Symposium on Biomedical Imaging (ISBI’08), Paris, France, (1155-1158). 14-17 May 2008. doi:10.1109/ISBI.2008.4541206

  • Bourgeat, Pierrick, Acosta, Oscar, Zuluaga, Maria, Fripp, Jurgen, Salvado, Olivier and Ourselin, Sebastien (2008). Improved cortical thickness measurement from mr images using partial volume estimation. In: 2008 IEEE International Symposium On Biomedical Imaging: From Nano to Macro, Vols 1-4. 5th IEEE International Symposium on Biomedical Imaging - From Nano to Macro, Paris France, (205-208). 14-17 May 2008. doi:10.1109/ISBI.2008.4540968

  • Hansen, David, Karunanithi, Mohan, Lawley, Michael, Maeder, Anthony, McBride, Simon, Morgan, Simon, Pang, Chaoyi, Salvado, Olivier and Sarela, Antti (2008). Improving the use, analysis and integration of patient health data. In: Advanced Web and NetworkTechnologies, and Applications: APWeb 2008 International Workshops: BIDM, IWHDM, and DeWeb: Revised selected papers. 10th Asia-Pacific Web Conference and Workshops, Shenyang, China, (74-84). 26-28 April 2008. doi:10.1007/978-3-540-89376-9-7

  • Fripp, Jurgen, Bourgeat, Pierrick, Raniga, Parnesh, Acosta, Oscar, Villemagne, Victor, Jones, Gareth, O'keefe, Graeme, Rowe, Christopher, Ourselin, Sébastien and Salvado, Olivier (2008). MR-less high dimensional spatial normalization of (11)C PiB PET images on a population of elderly, mild cognitive impaired and alzheimer disease patients. In: Medical Image Computing and Computer-Assisted Intervention - Miccai 2008, Pt I, Proceedings. 11th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI2008), New York, NY, U.S.A., (442-449). 6-10 September 2008. doi:10.1007/978-3-540-85988-8_53

  • Acosta, Oscar, Frimmel, Hans, Fenster, Aaron, Salvado, Olivier and Ourselin, Sebastien (2008). Pyramidal flux in an anisotropic diffusion scheme for enhancing structures in 3D images. In: Proceedings of SPIE: Medical Imaging 2008: Image processing. Medical Imaging 2008 Conference, San Diego, CA, United States, (91429-91429). 17-19 February 2008. doi:10.1117/12.771862

  • Russ, C., Passenger, J., Riek, S., Conlan, D., Hewett, D., Watson, M. and Salvado, O. (2008). Real-time photorealistic rendering techniques for surgical simulation. In: Walker, K., SimTecT 2008 Health Simulation Conference Proceedings. Simulation - Realising the Potential, Brisbane, (27). 8-11 September, 2008.

  • Nguyen, M, Salvado, O, Hoffman, R and Wilson, DL (2007). Cryoimaging of atherosclerotic lesions for 3D microscopic identification. In: Arteriosclerosis Thrombosis and Vascular Biology. Annual Conference on Arteriosclerosis, Thrombosis, and Vascular Biology, Chicago Il, (E132-E132). Apr 19-21, 2007.

  • Salvado, Olivier, Bourgeat, Pierrick, Tarnayo, Oscar Acosta, Zuluaga, Maria and Ourselin, Sebastien (2007). Fuzzy classification of brain MRI using a priori knowledge: Weighted fuzzy C-means. In: 2007 IEEE 11th International Conference On Computer Vision, Vols 1-6. 11th IEEE International Conference on Computer Vision (OMNIVIS 2007), Rio de Janeiro, Brazil, (2548-2555). 14-21 October 2007. doi:10.1109/ICCV.2007.4409155

  • Salvado, Olivier (2007). Parametrization of level-sets with B-splines. In: 2007 4th IEEE International Symposium on Biomedical Imaging: From nano to macro: Proceedings. 4th IEEE International Symposium on Biomedical Imaging (ISBI’07), Arlington, VA, United States, (1228-1231). Apr 12-15, 2007. doi:10.1109/ISBI.2007.357080

  • Salvado, Olivier, Roy, Debashish, Heinzel, Meredith, McKinley, Eliot and Wilson, David (2006). 3D cryo-section/imaging of blood vessel lesions for validation of MRI data. In: Michael J. Flynn and Jiang Hsieh, Proceedings of SPIE: Medical Imaging 2006: Physics of Medical Imaging. Medical Imaging 2006 Conference, San Diego, CA, United States, (14214-14214). 12-14 February 2006. doi:10.1117/12.649093

  • Salvado, Olivier and Wilson, David L. (2006). A new anisotropic diffusion method, application to partial volume effect reduction. In: Joseph M. Reinhardt and Josien P. W. Pluim, Proceedings of SPIE: Medical Imaging 2006: Image processing. Medical Imaging 2006 Conference, San Diego, CA, United States, (614464-1-614464-8). 12-14 February 2006. doi:10.1117/12.649098

  • Roy, Debashish, Breen, Michael, Salvado, Olivier, Heinzel, Meredith, McKinley, Eliot and Wilson, David (2006). Imaging system for creating 3D block-face cryo-images of whole mice. In: Armando Manduca and Amir A. Amini, Proceedings of SPIE: Medical Imaging 2006: Physiology, function, and structure from medical. Medical Imaging 2006 Conference, San Diego, CA, United States, (61431E-1-61431E-8). 12-14 February 2006. doi:10.1117/12.655617

  • Salvado, Olivier and Wilson, David L. (2006). Removal of interpolation induced artifacts in similarity surfaces. In: Josien P. W. Pluim, Bostjan Likar and Frans A. Gerritsen, Biomedical Image Registration: Third International Workshop, WBIR 2006: Proceedings. 3rd International Workshop on Biomedical Image Registration (WBIR 2006), Utrecht, Netherlands, (43-49). 9-11July 2006. doi:10.1007/11784012_6

  • Salvado, Olivier and Wilson, David L. (2006). Thick slice interpolation using reverse anisotropic diffusion to reduce partial volume effect. In: 2006 3rd IEEE International Symposium On Biomedical Imaging: From nano to macro. 3rd IEEE International Symposium on Biomedical Imaging (ISBI’06), Arlington, VA, United States, (1000-1003). 6-9 April 2006. doi:10.1109/ISBI.2006.1625089

  • Salvado, O., Hillenbrand, C. and Wilson, D.L. (2005). Correction of intensity inhomogeneity in MR images of vascular disease. In: Proceedings of the 2005 IEEE Engineering in Medicine and Biology 27th Annual Conference. 27th Annual IEEE Engineering in Medicine and Biology Society, ShangHai, China, (4302-4305). 1-4 September 2005. doi:10.1109/IEMBS.2005.1615416

  • Salvado, Olivier, Hillenbrand, Claudia and Wilson, David L. (2005). Partial volume correction using reverse diffusion. In: J. Michael Fitzpatrick and Joseph M. Reinhardt, Proceedings of SPIE: Medical Imaging 2005: Image processing. Medical Imaging 2005 Conference, San Diego, CA, United States, (625-633). 15-17 February 2005. doi:10.1117/12.596220

  • Salvado, O and Wilson, DL (2004). Entropy based method to correct intensity inhomogeneity in MR images.. In: Proceedings of the 26Th Annual International Conference of the Ieee Engineering in Medicine and Biology Society, Vols 1-7. 26th Annual International Conference of the IEEE-Engineering-in-Medicine-and-Biology-Society, San Francisco Ca, (164-167). Sep 01-05, 2004.

  • Salvado, O, Hillenbrand, C, Suri, J and Wilson, D (2004). MR coil sensitivity inhomogeneity correction for plaque characterization in carotid arteries. In: Medical Imaging 2004: Image Processing, Pts 1-3. Medical Imaging 2004 Conference, San Diego Ca, (2114-2121). Feb 17-19, 2004. doi:10.1117/12.535958

  • Salvado, O, Hillenbrand, C, Zhang, SX, Suri, J and Wilson, D (2004). MR signal inhomogeneity correction for visual and computerized atherosclerosis lesion assessment. In: 2004 2ND IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: MACRO TO NANO, VOLS 1 and 2. 2nd IEEE International Symposium on Biomedical Imaging, Arlington Va, (1143-1146). Apr 15-18, 2004.

  • Salvado, O, Hillenbrand, C, Zhang, SX, Suri, J and Wilson, D (2004). MR signal sensitivity inhomogeneity correction for assessment of atherosclerosis disease. In: Proceedings of the Seventh IASTED International Conference on Computer Graphics and Imaging. 7th IASTED International Conference on Computer Graphics and Imaging, Kauai Hi, (368-372). Aug 17-19, 2004.

  • Suri, J, Pappu, V, Salvado, O, Fei, BW, Zhang, SX, Lewin, J, Duerk, J and Wilson, D (2004). Rotational effect on ROI's for accurate lumen quantification in bifurcated MR plaque volumes. In: 17Th Ieee Symposium On Computer-Based Medical Systems, Proceedings. 17th IEEE Symposium on Computer-Based Medical Systems, Bethesda Md, (414-418). Jun 24-25, 2004.

Edited Outputs