Professor Sean Grimmond

NHMRC Principal Research Fellow

Institute for Molecular Bioscience
s.grimmond@uq.edu.au
+61 7 334 62057

Overview

The central focus of our research is to elucidate molecular eventscontrolling biological processes and pathological states through the application of bioinformatics, genome and transcriptome sequencing and array based technologies.

Professor Sean Grimmond is the Director of the Queensland Centre for Medical Genomics and leads Australia's effort into the study of pancreatic and ovarian cancer as part of the International Cancer Genome Consortium (www.icgc.org)

Research Interests

  • Pioneering Personalized Cancer Genomics:
    The ICGC program is also forming the foundations needed to create genomic applications of tangible clinical benefit such as molecular classification of cancer, improved diagnoses, new cancer surveillance methods, and strategies for selecting personalized therapeutic regimes. These advances will only be made possible though development of constantly evolving sequencing technology and conquering the colossal task of rapid integrated genome analysis for cancer research and clinical application.
  • Cohort-based Cancer Genomics:
    Genome sequencing is revolutionizing our ability to study the underlying molecular events driving human disease. In the case of cancer, collating an individual�s somatic mutation profile is now a reality. In 2009, Sean established the Queensland Centre for Medical Genomics and was awarded the Australian International Cancer Genome Consortium Program aimed at sequencing the matched normal and tumour genomes and transcriptomes for 500 pancreatic and ovarian cancer patients. The program is apporaching the completing of the first 100 patients and has provided unprecdented insight into the molecular driving events in panreatic cancer
  • Functional annotation of genomes and transcriptomes:
    Prof Grimmond has been actively involved in assessing the true complexity of RNA expression from mammalian loci and modelling the RNA mediated control of development and disease.

Qualifications

  • PhD, The University of Queensland
  • BSc (Hons, University of New England

Publications

  • Pattabiraman, Diwakar R., McGirr, Crystal, Shakhbazov, Konstantin, Barbier, Valerie, Krishnan, Keerthana, Mukhopadhyay, Pamela, Hawthorne, Paula, Trezise, Ann, Ding, Jianmin, Grimmond, Sean M., Papathanasiou, Peter, Alexander, Warren S., Perkins, Andrew C., Levesque, Jean-Pierre, Winkler, Ingrid G. and Gonda, Thomas J. (2014) Interaction of c-Myb with p300 is required for the induction of acute myeloid leukemia (AML) by human AML oncogenes. Blood, 123 17: 2682-2690.

  • Morran, Douglas C., Wu, Jianmin, Jamieson, Nigel B., Mrowinska, Agata, Kalna, Gabriela, Karim, Saadia, A., Au, Amy Y. M., Scarlett, Christopher J., Chang, David K., Pajak, Malgorzata Z., Australian Pancreatic Cancer Genome Initiative (APGI), Oien, Karin A., McKay, Colin J., Carter, C. Ross, Gillen, Gerry, Champion, Sue, Pilmott, Sally L., Anderson, Kurt I., Evans, T. R. Jeffry, Grimmond, Sean M., Biankin, Andrew V., Sansom, Owen J. and Morton, Jennifer P. (2014) Targeting mTOR dependency in pancreatic cancer. Gut, Online First : 1-11.

  • Weissmueller, Susann, Manchado, Eusebio, Saborowski, Michael, Morris IV, John P., Wagenblast, Elvin, Davis, Carrie A., Moon, Sung-Hwan, Pfister, Neil T., Tschaharganeh, Darjus F., Kitzing, Thomas, Aust, Daniela, Markert, Elke K., Wu, Jianmin, Grimmond, Sean M., Pilarsky, Christian, Prives, Carol, Biankin, Andrew V. and Lowe, Scott W. (2014) Mutant p53 drives pancreatic cancer metastasis through cell-autonomous PDGF receptor β signaling. Cell, 157 2: 382-394.

View all Publications

Publications

Book Chapter

  • Krishnan, Keerthana, Wood, David L. A., Steen, Jason A., Grimmond, Sean M. and Cloonan, Nicole (2012). Tag sequencing. In Robert A. Meyers (Ed.), Epigenetic regulation and epigenomics (pp. 145-164) Weinheim, Germany: Wiley.

  • Imelfort, M., Batley, J., Grimmond, S. and Edwards, D. (2009). Genome sequencing approaches and successes. In Plant genomics: Methods and protocols (pp. 345-358) New York, U. S.: Humana Press.

Journal Article

  • Pattabiraman, Diwakar R., McGirr, Crystal, Shakhbazov, Konstantin, Barbier, Valerie, Krishnan, Keerthana, Mukhopadhyay, Pamela, Hawthorne, Paula, Trezise, Ann, Ding, Jianmin, Grimmond, Sean M., Papathanasiou, Peter, Alexander, Warren S., Perkins, Andrew C., Levesque, Jean-Pierre, Winkler, Ingrid G. and Gonda, Thomas J. (2014) Interaction of c-Myb with p300 is required for the induction of acute myeloid leukemia (AML) by human AML oncogenes. Blood, 123 17: 2682-2690.

  • Morran, Douglas C., Wu, Jianmin, Jamieson, Nigel B., Mrowinska, Agata, Kalna, Gabriela, Karim, Saadia, A., Au, Amy Y. M., Scarlett, Christopher J., Chang, David K., Pajak, Malgorzata Z., Australian Pancreatic Cancer Genome Initiative (APGI), Oien, Karin A., McKay, Colin J., Carter, C. Ross, Gillen, Gerry, Champion, Sue, Pilmott, Sally L., Anderson, Kurt I., Evans, T. R. Jeffry, Grimmond, Sean M., Biankin, Andrew V., Sansom, Owen J. and Morton, Jennifer P. (2014) Targeting mTOR dependency in pancreatic cancer. Gut, Online First : 1-11.

  • Weissmueller, Susann, Manchado, Eusebio, Saborowski, Michael, Morris IV, John P., Wagenblast, Elvin, Davis, Carrie A., Moon, Sung-Hwan, Pfister, Neil T., Tschaharganeh, Darjus F., Kitzing, Thomas, Aust, Daniela, Markert, Elke K., Wu, Jianmin, Grimmond, Sean M., Pilarsky, Christian, Prives, Carol, Biankin, Andrew V. and Lowe, Scott W. (2014) Mutant p53 drives pancreatic cancer metastasis through cell-autonomous PDGF receptor β signaling. Cell, 157 2: 382-394.

  • Mooney, Jane E., Summers, Kim M., Gongora, Milena, Grimmond, Sean M., Campbell, Julie H., Hume, David A. and Rolfe, Barbara E. (2014) Transcriptional switching in macrophages associated with the peritoneal foreign body response. Immunology and Cell Biology, : .

  • Martin, Hilary C., Wani, Shivangi, Steptoe, Anita L., Krishnan, Keerthana, Nones, Katia, Nourbakhsh, Ehsan, Vlassov, Alexander, Grimmond, Sean M. and Cloonan, Nicole (2014) Imperfect centered miRNA binding sites are common and can mediate repression of target mRNAs. Genome Biology, 15 3: .

  • Markmiller, Sebastian, Cloonan, Nicole, Lardelli, Rea M., Doggett, Karen, Keightley, Maria-Cristina, Boglev, Yeliz, Trotter, Andrew J., Ng, Annie Y., Wilkins, Simon J., Verkade, Heather, Ober, Elke A., Field, Holly A., Grimmond, Sean M., Lieschke, Graham J., Stainier, Didier Y. R. and Heath, Joan K. (2014) Minor class splicing shapes the zebrafish transcriptome during development. Proceedings of the National Academy of Sciences of the United States of America, 111 8: 3062-3067.

  • Nones, Katia, Waddell, Nic, Song, Sarah, Patch, Ann-Marie, Miller, David, Johns, Amber, Wu, Jianmin, Kassahn, Karin S., Wood, David, Bailey, Peter, Fink, Lynn, Manning, Suzanne, Christ, Angelika N., Nourse, Craig, Kazakoff, Stephen, Taylor, Darrin, Leonard, Conrad, Chang, David K., Jones, Marc D., Thomas, Michelle, Watson, Clare, Pinese, Mark, Cowley, Mark, Rooman, Ilse, Pajic, Marina, Butturini, Giovanni, Malpaga, Anna, Corbo, Vincenzo, Crippa, Stefano, Falconi, Massimo, Zamboni, Guiseppe, Castelli, Paola, APGI, Lawlor, Rita T., Gill, Anthony J., Scarpa, Aldo, Pearson, John V., Biankin, Andrew V. and Grimmond, Sean M. (2014) Genome-wide DNA methylation patterns in pancreatic ductal adenocarcinoma reveal epigenetic deregulation of SLIT-ROBO, ITGA2 and MET signaling. International Journal of Cancer, 2014 5: 1110-1118.

  • Jamieson, Nigel Balfour, Chang, David K., Grimmond, Sean M. and Biankin, Andrew V. (2014) Can we move towards personalised pancreatic cancer therapy?. Expert Review of Gastroenterology and Hepatology, 8 4: 335-338.

  • Chang, David K., Grimmond, Sean M., Evans, T. R. Jeffry and Biankin, Andrew V. (2014) Mining the genomes of exceptional responders. Nature Reviews Cancer, 14 5: 291-292.

  • Chang, David K., Grimmond, Sean M. and Biankin, Andrew V. (2014) Pancreatic cancer genomics. Current Opinion in Genetics and Development, 24 1: 74-81.

  • Paroly, Suneeta S., Wang, Fengwei, Spraggon, Lee, Merregaert, Joseph, Batourina, Ekatherina, Tycko, Benjamin, Schmidt-Ott, Kai M., Grimmond, Sean, Little, Melissa and Mendelsohn, Cathy (2013) Stromal protein Ecm1 regulates ureteric bud patterning and branching. PloS One, 8 12: .

  • Steijger, Tamara, Abril, Josep F., Engsrtom, Par G., Kokocinski, Felix, The RGASP Consortium, Hubbard, Tim J., Guigo, Roderic, Harrow, Jennifer, Bertone, Paul, Cloonan, Nicole and Grimmond, Sean (2013) Assessment of transcript reconstruction methods for RNA-seq. Nature Methods, 10 12: 1177-1186.

  • Krishnan, Keerthana, Steptoe, Anita, Martin, Hilary, Pattabiraman, Diwakar R., Nones, Katia, Waddell, Nicola, Mariasegaram, Mythily, Simpson, Peter T., Lakhani, Sunil R., Vlassov, Alexander, Grimmond, Sean M. and Cloonan, Nicole (2013) miR-139-5p is a regulator of metastatic pathways in breast cancer. RNA, 19 12: 1767-1780.

  • Kassahn, Karin S., Holmes, Oliver, Nones, Katia, Patch, Ann-Marie, Miller, David K., Christ, Angelika K., Harliwong, Ivon, Bruxner, Timothy J., Xu, Qinying, Anderson, Matthew, Wood, Scott, Leonard, Conrad, Taylor, Darrin, Newell, Felicity, Song, Sarah, Idrisoglu, Senel, Nourse, Craig, Nourbakhsh, Ehsan, Manning, Suzanne, Wani, Shivangi, Steptoe, Anita, Pajic, Marina, Cowley, Mark J., Pinese, Mark, Chang, David K., Gill, Anthony J., Johns, Amber L., Wu, Jianmin, Wilson, Peter J., Fink, Lynn, Biankin, Andrew V., Waddell, Nicola, Grimmond, Sean M. and Pearson, John V. (2013) Somatic point mutation calling in low cellularity tumors. PloS One, 8 11: e74380.1-e74380.10.

  • Vanderver, Adeline, Simons, Cas, Schmidt, Johanna L., Pearl, Philip L., Bloom, Miriam, Lavenstein, Bennett, Miller, David, Grimmond, Sean M. and Taft, Ryan J. (2013) Identification of a novel de novo p.Phe932Ile KCNT1 mutation in a patient with leukoencephalopathy and severe epilepsy. Pediatric Neurology, In Press, Corrected Proof : 1-3.

  • van Hal, Sebastiaan J., Steen, Jason A., Espedido, Bjorn A., Grimmond, Sean M., Cooper, Matthew A., Holden, Matthew T. G., Bentley, Stephen D., Gosbell, Iain B. and Jensen, Slade O. (2013) In vivo evolution of antimicrobial resistance in a series of Staphylococcus aureus patient isolates: the entire picture or a cautionary tale?. Journal of Antimicrobial Chemotherapy, Article in press : .

  • Chou, Angela, Waddell, Nicola, Cowley, Mark J., Gill, Anthony J., Chang, David K., Patch, Ann-Marie, Nones, Katia, Wu, Jianmin, Pinese, Mark, Johns, Amber L., Miller, David K., Kassahn, Karin S., Nagrial, Adnan M., Wasan, Harpreet, Goldstein, David, Toon, Christopher W., Chin, Venessa, Chantrill, Lorraine, Humphris, Jeremy, Mead, R. Scott, Rooman, Ilse, Samra, Jaswinder S., Pajic, Marina, Musgrove, Elizabeth A., Pearson, John V., Morey, Adrienne L., Grimmond, Sean M. and Biankin, Andrew V. (2013) Clinical and molecular characterization of HER2 amplified-pancreatic cancer. Genome Medicine, 5 8: 78.1-78.10.

  • Polanco, Juan Carlos, Ho, Mirabelle S. H., Wang, Bei, Zhou, Qi, Wolvetang, Ernst, Mason, Elizabeth, Wells, Christine A., Kolle, Gabriel, Grimmond, Sean M., Bertoncello, Ivan, O'Brien, Carmel and Laslett, Andrew L. (2013) Identification of Unsafe Human Induced Pluripotent Stem Cell Lines Using a Robust Surrogate Assay for Pluripotency. Stem Cells, 31 8: 1498-1510.

  • Alexandrov, Ludmil B., Nik-Zainal, Serena, Wedge, David C., Aparicio, Samuel A. J. R., Behjati, Sam, Biankin, Andrew V., Bignell, Graham R., Bolli, Niccolo, Borg, Ake, Borresen-Dale, Anne-Lise, Boyault, Sandrine, Burkhardt, Birgit, Butler, Adam P., Caldas, Carlos, Davies, Helen R., Desmedt, Christine, Eils, Roland, Eyfjord, Jorunn Erla, Foekens, John A., Greaves, Mel, Hosoda, Fumie, Hutter, Barbara, Ilicic, Tomislav, Imbeaud, Sandrine, Imielinsk, Marcin, Jaeger, Natalie, Jones, David T. W., Jones, David, Knappskog, Stian, Kool, Marcel, Lakhani, Sunil R., Lopez-Otin, Carlos, Martin, Sancha, Munshi, Nikhil C., Nakamura, Hiromi, Northcott, Paul A., Pajic, Marina, Papaemmanuil, Elli, Paradiso, Angelo, Pearson, John V., Puente, Xose S., Raine, Keiran, Ramakrishna, Manasa, Richardson, Andrea L., Richter, Julia, Rosenstiel, Philip, Schlesner, Matthias, Schumacher, Ton N., Span, Paul N., Teague, Jon W., Totoki, Yasushi, Tutt, Andrew N. J., Valdes-Mas, Rafael, van Buuren, Marit M., van 't Veer, Laura, Vincent-Salomon, Anne, Waddell, Nicola, Yates, Lucy R., Zucman-Rossi, Jessica, Futreal, P. Andrew, McDermott, Ultan, Lichter, Peter, Meyerson, Matthew, Grimmond, Sean M., Siebert, Reiner, Campo, Elias, Shibata, Tatsuhiro, Pfister, Stefan M., Campbell, Peter J. and Stratton, Michael R. (2013) Signatures of mutational processes in human cancer. Nature, 500 7463: 415-421.

  • Cowley, Mark J., Chang, David K., Pajic, Marina, Johns, Amber L., Waddell, Nicola, Grimmond, Sean M. and Biankin, Andrew V. (2013) Understanding pancreatic cancer genomes. Journal of Hepato-Biliary-Pancreatic Sciences, 20 6: 549-556.

  • Fernández Rojo, Manuel, Gongora, Milena, Fitzsimmons, Rebecca L., Martel, Nick, Martin, Sheree D., Nixon, Susan, Brooks, Andrew J., Ikonomopoulou, Maria P., Martin, Sally, Lo, Harriet P., Myers, Stephen A., Restall, Christina, Ferguson, Charles, Pilch, Paul F., McGee, Sean L., Anderson, Robin L., Waters, Michael J., Hancock, John F., Grimmond, Sean M., Muscat, George E. and Parton, Robert G. (2013) Caveolin-1 is necessary for hepatic oxidative lipid metabolism: evidence for crosstalk between caveolin-1 and bile acid signaling. Cell Reports, 4 2: 238-247.

  • Cao, Ying, Hoeppner, Luke H., Bach, Steven, Guangqi, E., Guo, Yan, Wang, Enfeng, Wu, Jianmin, Cowley, Mark J., Chang, David K., Waddell, Nicola, Grimmond, Sean M., Biankin, Andrew V., Daly, Roger J., Zhang, Xiaohui and Mukhopadhyay, Debabrata (2013) Neuropilin-2 promotes extravasation and metastasis by interacting with endothelial alpha 5 integrin. Cancer Research, 73 14: 4579-4590.

  • Atack, John M., Srikhanta, Yogitha N., Djoko, Karrera Y., Welch, Jessica P., Hasri, Norain H. M., Steichen, Christopher T., Vanden Hoven, Rachel N., Grimmond, Sean M., Othman, Dk Seti Maimonah Pg, Kappler, Ulrike, Apicella, Michael A., Jennings, Michael P., Edwards, Jennifer L. and McEwan, Alastair G. (2013) Characterisation of an ntrX mutant of Neisseria gonorrhoeae reveals a response regulator that controls expression of respiratory enzymes in oxidase-positive proteobacteria. Journal of Bacteriology, 195 11: 2632-2641.

  • Rakoczy, Joanna, Fernandez-Valverde, Selene L., Glazov, Evgeny A., Wainwright, Elanor N., Sato, Tempei, Takada, Shuji, Combes, Alexander N., Korbie, Darren J., Miller, David, Grimmond, Sean M., Little, Melissa H., Asahara, Hiroshi, Mattick, John S., Taft, Ryan J. and Wilhelm, Dagmar (2013) MicroRNAs-140-5p/140-3p modulate leydig cell numbers in the developing mouse testis. Biology of Reproduction, 88 6: .

  • Taft, Ryan J., Vanderver, Adeline, Leventer, Richard J., Damiani, Stephen A., Simons, Cas, Grimmond, Sean M., Miller, David, Schmidt, Johanna, Lockhart, Paul J., Pope, Kate, Ru, Kelin, Crawford, Joanna, Rosser, Tena, de Coo, Irenaeus F. M., Juneja, Monica, Verma, Ishwar C., Prabhakar, Prab, Blaser, Susan, Raiman, Julian, Pouwels, Petra J. W., Bevova, Marianna R., Abbink, Truus E. M., van der Knaap, Marjo S. and Wolf, Nicole I. (2013) Mutations in DARS cause hypomyelination with brain stem and spinal cord involvement and leg spasticity. American Journal of Human Genetics, 92 5: 774-780.

  • Simons, Cas, Wolf, Nicole I., McNeil, Nathan, Caldovic, Ljubica, Devaney, Joseph M., Takanohashi, Asako, Crawford, Joanna, Ru, Kelin, Grimmond, Sean M., Miller, David, Tonduti, Davide, Schmidt, Johanna L., Chudnow, Robert S., van Coster, Rudy, Lagae, Lieven, Kisler, Jill, Sperner, Juergen, van der Knaap, Marjo S., Schiffmann, Raphael, Taft, Ryan J. and Vanderver, Adeline (2013) A de novo mutation in the beta-tubulin gene TUBB4A results in the leukoencephalopathy hypomyelination with atrophy of the basal ganglia and cerebellum. American Journal of Human Genetics, 92 5: 767-773.

  • Briggs, James A., Sun, Jane, Shepherd, Jill, Ovchinnikov, Dmitry A., Chung, Tung-Liang, Nayler, Sam P., Kao, Li-Pin, Morrow, Carl A., Thakar, Nilay Y., Soo, Set-Yen, Peura, Teija, Grimmond, Sean and Wolvetang, Ernst J. (2013) Integration-free induced pluripotent stem cells model genetic and neural developmental features of Down Syndrome etiology. Stem Cells, 31 3: 467-478.

  • Espedido, Bjoern A., Steen, Jason A., Ziochos, Helen, Grimmond, Sean M., Cooper, Matthew A., Gosbell, Iain B., van Hal, Sebastiaan J. and Jensen, Slade O. (2013) Whole Genome Sequence Analysis of the First Australian OXA-48-Producing Outbreak-Associated Klebsiella pneumoniae Isolates: The Resistome and In Vivo Evolution. PLoS One, 8 3: e59920.1-e59920.6.

  • Krishnan, Keerthana, Steptoe, Anita L., Martin, Hilary C., Wani, Shivangi, Nones, Katia, Waddell, Nic, Mariasegaram, Mythily, Simpson, Peter T., Lakhani, Sunil R., Gabrielli, Brian, Vlassov, Alexander, Cloonan, Nicole and Grimmond, Sean M. (2013) MicroRNA-182-5-p targets a network of genes involved in DNA repair. RNA, 19 2: 230-242.

  • Biankin, Andrew V. and Grimmond, Sean M. (2013) Novel cancer drivers: mining the kinome. Genome Medicine, 5 2: 19.1-19.3.

  • Kumar, Dhirendra, Yadav, Amit Kumar, Kadimi, Puneet Kumar, Nagaraj, Shivashankar H., Grimmond, Sean M. and Dash, Debasis (2013) Proteogenomic analysis of bradyrhizobium japonicum USDA110 using genosuite, an automated multi-algorithmic pipeline. Molecular and Cellular Proteomics, 12 11: 3388-3397.

  • Biankin, Andrew V., Waddell, Nicola, Kassahn, Karin S., Gingras, Marie-Claude, Muthuswamy, Lakshmi B., Johns, Amber L., Miller, David K., Wilson, Peter J., Patch, Ann-Marie, Wu, Jianmin, Chang, David K., Cowley, Mark J., Gardiner, Brooke B., Song, Sarah, Harliwong, Ivon, Idrisoglu, Senel, Nourse, Craig, Nourbakhsh, Ehsan, Manning, Suzanne, Wani, Shivangi, Gongora, Milena, Pajic, Marina, Scarlett, Christopher J., Gill, Anthony J., Pinho, Andreia V., Rooman, Ilse, Anderson, Matthew, Holmes, Oliver, Leonard, Conrad, Taylor, Darrin, Wood, Scott, Xu, Christina, Nones, Katia, Fink, J. Lynn, Christ, Angelika, Bruxner, Tim, Cloonan, Nicole, Kolle, Gabriel, Newell, Felicity, Pinese, Mark, Mead, R. Scott, Humphris, Jeremy L., Kaplan, Warren, Jones, Marc D., Colvin, Emily K., Nagrial, Adnan M., Humphrey, Emily S., Chou, Angela, Chin, Venessa T., Chantrill, Lorraine A., Mawson, Amanda, Samra, Jaswinder S., Kench, James G., Lovell, Jessica A., Daly, Roger J., Merrett, Neil D., Toon, Christopher, Epari, Krishna, Nguyen, Nam Q., Barbour, Andrew, Zeps, Nikolajs, Australian Pancreatic Cancer Genome Initiative, Pearson, John V. and Grimmond, Sean M. (2012) Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes. Nature, 491 7424: 399-405.

  • Tactacan, Carole M., Chang, David K., Cowley, Mark J., Humphrey, Emily S., Wu, Jianmin, Gill, Anthony J., Chou, Angela, Nones, Katia, Grimmond, Sean M., Sutherland, Robert L., Biankin, Andrew V., Daly, Roger J. and Australian Pancreratic Genome Initiative (2012) RON is not a prognostic marker for resectable pancreatic cancer. BMC Cancer, 12 Article No.395: .

  • Hemberg, Martin, Gray, Jesse M., Cloonan, Nicole, Kuersten, Scott, Grimmond, Sean, Greenberg, Michael E. and Kreiman, Gabriel (2012) Integrated genome analysis suggests that most conserved non-coding sequences are regulatory factor binding sites. Nucleic Acids Research, 40 16: 7858-7869.

  • Song, Sarah, Nones, Katia, Miller, David, Harliwong, Ivon, Kassahn, Karin S., Pinese, Mark, Pajic, Marina, Gill, Anthony J., Johns, Amber L., Anderson, Matthew, Holmes, Oliver, Leonard, Conrad, Taylor, Darrin, Wood, Scott, Xu, Qinying, Newell, Felicity, Cowley, Mark J., Wu, Jianmin, Wilson, Peter, Fink, Lynn, Biankin, Andrew V., Waddell, Nic, Grimmond, Sean M. and Pearson, John V. (2012) qpure: a tool to estimate tumor cellularity from genome-wide single-nucleotide polymorphism profiles. PLoS One, 7 9: e45835.1-e45835.7.

  • Chen, Huijun, Palmer, James S., Thaigarajan, Rathi D., Dinger, Marcel E., Frampton, Emmanuelle, Chiu, Hansheng, Schulz, Alexandra, Spiller, Cassy, Grimmond, Sean M., Little, Melissa H., Koopman, Peter A. and Wilhelm, Ingrid D. (2012) Identification of novel markers of mouse fetal ovary development. PLoS One, 7 7: e41683.1-e41683.15.

  • Petekanos, Rebecca A., Li, Joan, Gongora, Milena, Chandrakanthan, Vashe, Scown, Janelle, Suhaimi, Norseha, Brooke, Gary, Christensen, Melinda E., Doan, Tram, Rice, Alison M., Osborne, Geoffrey W., Grimmond, Sean M., Harvey, Richard P., Atkinson, Kerry and Little, Melissa H. (2012) Comprehensive transcriptome and immunophenotype analysis of renal and cardiac MSC-like populations supports strong congruence with bone marrow MSC despite maintenance of distinct identities (vol 8, pg 58, 2012). Stem Cell Research, 9 1: 58-58.

  • Espedido, B. A., Steen, J. A., Barbagiannakos, T., Mercer, J., Paterson, D. L., Grimmond, S. M., Cooper, M. A., Gosbell, I. B., van Hal, S. J. and Jensen, S. O. (2012) Carriage of an ACME II variant may have contributed to methicillin-resistant staphylococcus aureus sequence type 239-like strain replacement in Liverpool hospital, Sydney, Australia. Antimicrobial Agents and Chemotherapy, 56 6: 3380-3383.

  • Perez-Mancera, Pedro A., Rust, Alistair G., van der Weyden, Louise, Kristiansen, Glen, Li, Allen, Sarver, Aaron L., Silverstein, Kevin A. T., Grutzmann, Robert, Aust, Daniela, Rummele, Petra, Knosel, Thomas, Herd, Colin, Stemple, Derek L., Kettleborough, Ross, Brosnan, Jacqueline A., Li, Ang, Morgan, Richard, Knight, Richard, Yu, Jun, Stegeman, Shane, Collier, Lara S., ten Hoeve, Jelle J., de Ridder, Jeroen, Klein, Alison P., Goggins, Michael, Hruban, Ralph H., Chang, David K., Biankin, Andrew V., Grimmond, Sean M., Wessels, Lodewyk F. A., Wood, Stephen A., Iacobuzio-Donahue, Christine A., Pilarsky, Christine A., Largaespada, Christine A., Adams, David J., Tuveson, David A. and Australian Pancreatic Canc Genome (2012) The deubiquitinase USP9X suppresses pancreatic ductal adenocarcinoma. Nature, 486 7402: 11114.1-11114.7.

  • Yu, Jing, Valerius, M. Todd, Duah, Mary, Staser, Karl, Hansard, Jennifer K., Guo, Jin-Jin, McMahon, Jill, Vaughan, Joe, Faria, Diane, Georgas, Kylie, Rumballe, Bree, Ren, Qun, Krautzberger, A. Michaela, Junker, Jan P., Thiagarajan, Rathi D., Machanick, Philip, Gray, Paul A., van Oudenaarden, Alexander, Rowitch, David H., Stiles, Charles D., Ma, Qiufu, Grimmond, Sean M., Bailey, Timothy L., Little, Melissa H. and McMahon, Andrew P. (2012) Identification of molecular compartments and genetic circuitry in the developing mammalian kidney. Development, 139 10: 1863-1873.

  • Schroder, Kate, Irvine, Katharine M., Taylor, Martin S., Bokil, Nilesh J., Le Cao, Kim-Anh, Masterman, Kelly-Anne, Labzin, Larisa I., Semple, Colin A., Kapetanovic, Ronan, Fairbairn, Lynsey, Akalin, Altuna, Faulkner, Geoffrey J., Baillie, John Kenneth, Gongora, Milena, Daub, Carsten O., Kawaji, Hideya, McLachlan, Geoffrey J., Goldman, Nick, Grimmond, Sean M., Carninci, Piero, Suzuki, Harukazu, Hayashizaki, Yoshihide, Lenhard, Boris, Hume, David A. and Sweet, Matthew J. (2012) Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages. Proceedings of the National Academy of Sciences of the USA, 109 16: E944-E953.

  • Mann, Karen M., Ward, Jerrold M., Yew, Christopher Chin Kuan, Kovochich, Anne, Dawson, David W., Black, Michael A., Brett, Benjamin T., Sheetz, Benjamin T., Dupuy, Adam J., Chang, David K., Biankin, Andrew V., Waddell, Nicola, Kassahn, Karin S., Grimmond, Sean M., Rust, Alistair G., Adams, David J., Jenkins, Nancy A., Copeland, Neal G., Australian Pancreatic Cancer Genome Initiative, Miller, David K., Wilson, Peter J., Patch, Ann-Marie, Song, Sarah, Harliwong, Ivon, Idrisoglu, Senel, Nourse, Craig, Nourbakhsh, Ehsan, Manning, Suzanne, Wani, Shivangi, Gongora, Milena, Anderson, Matthew, Holmes, Oliver, Leonard, Conrad, Taylor, Darrin, Wood, Scott, Xu, Christina, Nones, Katia, Fink, J. Lynn, Christ, Angelika, Bruxner, Tim, Cloonan, Nicole, Newell, Felicity and Pearson, John V. (2012) Sleeping Beauty mutagenesis reveals cooperating mutations and pathways in pancreatic adenocarcinoma. Proceedings of the National Academy of Sciences of the United States of America, 109 16: 5934-5941.

  • Pelekanos, Rebecca A., Li, Joan, Gongora, Milena, Chandrakanthan, Vashe, Scown, Janelle, Suhaimi, Norseha, Gary Brooke, Christensen, Melinda E., Doan, Tram, Rice, Alison M., Osborne, Geoffrey W., Grimmond, Sean M., Harvey, Richard P., Atkinson, Kerry and Little, Melissa H. (2012) Comprehensive transcriptome and immunophenotype analysis of renal and cardiac MSC-like populations supports strong congruence with bone marrow MSC despite maintenance of distinct identities. Stem Cell Research, 8 1: 58-73.

  • Cowley, Mark J., Pinese, Mark, Kassahn, Karin S., Waddell, Nic, Pearson, John V., Grimmond, Sean M., Biankin, Andrew V., Hautaniemi, Sampsa and Wu, Jianmin (2012) PINA v2.0: Mining interactome modules. Nucleic Acids Research, 40 D1: D862-D865.

  • Cloonan, Nicole, Wani, Shivangi, Xu, Qinying, Gu, Jian, Lea, Kristi, Heater, Sheila, Barbacioru, Catalin, Steptoe, Anita L., Martin, Hilary C., Nourbakhsh, Ehsan, Krishnan, Keerthana, Gardiner, Brooke, Wang, Xiaohui, Nones, Katia, Steen, Jason A., Matigan, Nicholas A., Wood, David L., Kassahn, Karin S., Waddell, Nic, Shepherd, Jill, Lee, Clarence, Ichikawa, Jeff, McKernan, Kevin, Bramlett, Kelli, Kuersten, Scott and Grimmond, Sean M. (2011) MicroRNAs and their isomiRs function cooperatively to target common biological pathways. Genome Biology: biology for the post-genomic era, 12 R126: 1-20.

  • Srikhanta, Yogitha N., Gorrell, Rebecca J., Steen, Jason A., Gawthorne, Jayde A., Kwok, Terry, Grimmond, Sean M., Robins-Browne, Roy M. and Jennings, Michael P. (2011) Phasevarion mediated epigenetic gene regulation in Helicobacter pylori. PLoS One, 6 12: e27569.1-e27569.9.

  • Kolle, Gabriel, Shepherd, Jill L., Gardiner, Brooke, Kassahn, Karin S., Cloonan, Nicole, Wood, David L. A., Nourbakhsh, Ehsan, Taylor, Darrin F., Wani, Shivangi, Chy, Hun S., Zhou, Qi, McKernan, Kevin, Kuersten, Scott, Laslett, Andrew L. and Grimmond, Sean M. (2011) Deep-transcriptome and ribonome sequencing redefines the molecular networks of pluripotency and the extracellular space in human embryonic stem cells. Genome Research, 21 12: 2014-2025.

  • Thiagarajan, Rathi D., Cloonan, Nicole, Gardiner, Brooke B., Mercer, Tim R., Kolle, Gabriel, Nourbaksh, Ehsan, Wani, Shivangi, Tang, Dave, Krishnan, Keerthana, Georgas, Kylie M., Rumballe, Bree A., Chiu, Han S., Steen, Jason A., Mattick, John S., Little, Melissa H. and Grimmond, Sean M. (2011) Refining transcriptional programs in kidney development by integration of deep RNA-sequencing and array-based spatial profiling. BMC Genomics, 12 : 441-1-441-16.

  • Škalamera, Dubravka, Ranall, Max V., Wilson, Benjamin M., Leo, Paul, Purdon, Amy S., Hyde, Carolyn, Nourbakhsh, Ehsan, Grimmond, Sean M., Barry, Simon C., Gabrielli, Brian and Gonda, Thomas J. (2011) A high-throughput platform for lentiviral overexpression screening of the human ORFeome. PLoS One, 6 5: e20057.1-e20057.14.

  • Smart, C.E., Wronski, A., French, J.D., Edwards, S.L., Asselin-Labat, M.L., Waddell, N., Peters, K., Brewster, B.L., Brooks, K., Simpson, K., Manning, N., Lakhani, S.R., Grimmond, S., Lindeman, G.J., Visvader, J.E. and Brown, M.A. (2011) Analysis of brca1-deficient mouse mammary glands reveals reciprocal regulation of Brca1 and c-kit. Oncogene, 30 13: 1597-1607.

  • Wood, David L. A., Xu, Qinying, Pearson, John V., Cloonan, Nicole and Grimmond, Sean M. (2011) X-MATE: a flexible system for mapping short read data. Bioinformatics, 27 4: 580-581.

  • Kassahn, Karin S., Waddell, Nic and Grimmond, Sean M. (2011) Sequencing transcriptomes in toto. Integrative Biology, 3 5: 522-528.

  • Thiagarajan, Rathi D., Georgas, Kylie M., Rumballe, Bree A., Lesieur, Emmanuelle, Chiu, Han Sheng, Taylor, Darrin, Tang, Dave T. P., Grimmond, Sean M. and Little, Melissa H. (2011) Identification of anchor genes during kidney development defines ontological relationships, molecular subcompartments and regulatory pathways. PLoS One, 6 2: 1-15.

  • Koehler, Ryan, Issac, Hadar, Cloonan, Nicole and Grimmond, Sean M. (2011) The Uniqueome: A mappability resource for short-tag sequencing. Bioinformatics, 27 2, Article number btq640: 272-274.

  • Mercer, Tim R., Dinger, Marcel E., Bracken, Cameron P., Kolle, Gabriel, Szubert, Jan M., Korbie, Darren J., Askarian-Amiri, Marjan E., Gardiner, Brooke B., Goodall, Gregory J., Grimmond, Sean M. and Mattick, John S. (2010) Regulated post-transcriptional RNA cleavage diversifies the eukaryotic transcriptome. Genome Research, 20 12: 1639-1650.

  • Suen, JY, Gardiner, B, Grimmond, S and Fairlie, DP (2010) Profiling gene expression induced by protease-activated receptor 2 (PAR2) activation in human kidney cells. PLoS One, 5 11: e13809-1-e13809-14.

  • Cloonan, N., Waddell, N. and Grimmond, S. M. (2010) The clinical potential and challenges of sequencing cancer genomes for personalized medical genomics. I Drugs, 13 11: 778-781.

  • Chung, Tung-Liang, Turner, Jennifer P., Thaker, Nilay Y., Kolle, Gabriel, Cooper-White, Justin J., Grimmond, Sean M., Pera, Martin F. and Wolvetang, Ernst J. (2010) Ascorbate promotes epigenetic activation of CD30 in human embryonic stem cells. Stem Cells, 28 10: 1782-1793.

  • Cloonan, Nicole and Grimmond, Sean M. (2010) Simplifying complexity. Nature Methods, 7 10: 793-795.

  • Lin, S. Adelia, Kolle, Gabriel, Grimmond, Sean M., Zhou, Qi, Doust, Elizabeth, Little, Melissa H., Aronow, Bruce, Ricardo, Sharon D., Pera, Martin F., Bertram, John F. and Laslett, Andrew L. (2010) Subfractionation of differentiating human embryonic stem cell populations allows the isolation of a mesodermal population enriched for intermediate mesoderm and putative renal progenitors. Stem Cells and Development, 19 10: 1637-1648.

  • Waddell, N, Arnold, J, Cocciardi, S, da Silva, L, Marsh, A, Riley, J, Johnstone, CN, Orloff, M, Assie, G, Eng, C, Reid, L, Keith, P, Yan, M, Fox, S, Devilee, P, Godwin, AK, Hogervorst, FBL, Couch, F, Grimmond, S, Flanagan, JM, Khanna, K, Simpson, PT, Lakhani, SR, Chenevix-Trench, G and kConFab Investigators (2010) Subtypes of familial breast tumours revealed by expression and copy number profiling. Breast Cancer Research And Treatment, 123 3: 661-677.

  • Chung, TL, Brena, RM, Kolle, G, Grimmond, SM, Berman, BP, Laird, PW, Pera, MF and Wolvetang, EJ (2010) Vitamin C promotes widespread yet specific DNA demethylation of the epigenome in human embryonic stem cells. Stem Cells, 28 10: 1848-1855.

  • Chiu, Han Sheng, Szucsik, John C., Georgas, Kylie M., Jones, Julia L., Rumballe, Bree A., Tang, Dave, Grimmond, Sean M., Lewis, Alfor G., Aronow, Bruce J., Lessard, James L. and Little, Melissa H. (2010) Comparative gene expression analysis of genital tubercle development reveals a putative appendicular Wnt7 network for the epidermal differentiation. Developmental Biology, 344 2: 1071-1087.

  • Tallack, Michael R., Whitington, Tom, Yuen, Wai Shan, Wainwright, Elanor N., Keys, Janelle R., Gardiner, Brooke B., Nourbakhsh, Ehsan, Cloonan, Nicole, Grimmond, Sean M., Bailey, Timothy L. and Perkins, Andrew C. (2010) A global role for KLF1 in erythropoiesis revealed by ChIP-seq in primary erythroid cells. Genome Research, 20 8: 1052-1063.

  • Le, S. J., Gongora, M., Zhang, B., Grimmond, S., Campbell, G. R., Campbell, J. H. and Rolfe, B. E. (2010) Gene expression profile of the fibrotic response in the peritoneal cavity. Differentiation, 79 4-5: 232-243.

  • Hudson, T. J., Anderson, W., Aretz, A., Barker, A. D., Grimmond, S. M., Pearson, J. V., Cloonan, N., Gardiner, B. A., Waddell, N. J., Wilson, P. J., Wainwright, B. J. and The International Cancer Genome Consortium (2010) International network of cancer genome projects. Nature, 464 7291: 993-998.

  • Sims-Lucas, Sunder, Young, Richard J., Martinez, Gemma, Taylor, Darrin, Grimmond, Sean M., Teasdale, Rohan, Little, Melissa H., Bertram, John F. and Caruana, Georgina (2010) Redirection of renal mesenchyme to stromal and chondrocytic fates in the presence of TGF-β2. Differentiation, 79 4-5: 272-284.

  • Ravasi, Timothy, Suzuki, Harukazu, Cannistraci, Carlo Vittorio, Katayama, Shintaro, Bajic, Vladimir B., Tan, Kai, Akalin, Altuna, Schmeier, Sebastian, Kanamori-Katayama, Mutsumi, Carninci, Piero, Bertin, Nicholas, Daub, Cartsten O., Forrest, Alistair R. R., Gough, Julian, Grimmond, Sean, Han, Jung-Hoon, Hashimoto, Takehiro, Hide, Winston, Hofmann, Oliver, Kamburov, Atanas, Kaur, Mandeep, Kawaji, Hideya, Kubosaki, Atsutaka, Lassmann, Timo, van Nimwegen, Erik, MacPherson, Cameron Ross, Ogawa, Chihiro, Radovanovic, Aleksandar, Schwartz, Ariel, Teasdale, Rohan D., Tegner, Jesper, Lenhard, Boris, Teichmann, Sarah A., Arakawa, Takahiro, Ninomiya, Noriko, Murakami, Kayoko, Tagami, Michihira, Fukuda, Shiro, Imamura, Kengo, Kai, Chikatoshi, Ishihara, Ryoko, Kitazume, Yayoi, Kawai, Jun, Hume, David A., Ideker, Trey and Hayashizaki, Yoshihide (2010) An atlas of combinatorial transcriptional regulation in mouse and man. Cell, 140 5: 744-752.

  • Wu, Hsing-Ju, Seib, Kate L., Srikhanta, Yogitha N., Edwards, Jennifer, Kidd, Stephen P., Maguire,Tina L., Hamilton, Amanda, Pan, Kuan-Tin, Hsiao, He-Hsuan, Yao, Chen-Wen, Grimmond, Sean M., Apicella, Michael A., McEwan, Alastair G., Wang, Andrew H-J. and Jennings, Michael P. (2010) Manganese regulation of virulence factors and oxidative stress resistance in Neisseria gonorrhoeae. Journal of Proteomics, 73 5: 899-916.

  • Walker, LC, Thompson, BA, Waddell, N, Grimmond, SM, Spurdle, AB and KConFab Investigators (2010) Use of DNA-damaging agents and RNA pooling to assess expression profiles associated with BRCA1 and BRCA2 mutation status in familial breast cancer patients. PLoS Genetics, 6 2: e1000850-1-e1000850-9.

  • Hough, Shelley R., Laslett, Andrew L., Grimmond, Sean B., Kolle, Gabriel and Pera, Martin F. (2009) A continuum of cell states spans pluripotency and lineage commitment in human embryonic stem cells. PLoS One, 4 11: x-x.

  • Kolle, G, Ho, M, Zhou, Q, Chy, H. S., Krishnan, K, Cloonan, N, Bertoncello, I, Laslett, A. L. and Grimmond, S. M. (2009) Identification of human embryonic stem cell surface markers by combined membrane-polysome translation state array analysis and immunotranscriptional profiling. Stem Cells, 27 10: 2446-2456.

  • Hashimoto, T, de Hoon, M. J. L., Grimmond, S. M., Daub, C. O., Hayashizaki, Y and Faulkner, G. J. (2009) Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite. Bioinformatics, 25 19: 2613-2614.

  • Grandela, C., Pera, M. F., Grimmond, S. M., Kolle, G. and Wolvetang, E. J. (2009) Corrigendum to "p53 is required for etoposide-induced apoptosis of human embryonic stem cells" [Stem Cell Research 1 (2008) 116-128]. Stem Cell Research, 3 2-3: 179-179.

  • Georgas, Kylie, Rumballe, Bree, Valerius, M. Todd, Chiu, Han Sheng, Thiagarajan, Rathi D., Lesieur, Emmanuelle, Aronow, Bruce J., Brunskill, Eric W., Combes, Alexander N., Tang, Dave, Taylor, Darrin, Grimmond, Sean M., Potter, S. Steven, McMahon, Andrew P. and Little, Melissa H. (2009) Analysis of early nephron patterning reveals a role for distal RV proliferation in fusion to the ureteric tip via a cap mesenchyme-derived connecting segment. Developmental Biology, 332 2: 273-286.

  • Cloonan, Nicole, Xu, Qinying, Faulkner, Geoffrey J., Taylor, Darrin F., Tang, Dave T. P., Kolle, Gabriel and Grimmond, Sean M. (2009) RNA-MATE: a recursive mapping strategy for high throughput RNA-sequencing data. Bioinformatics, 25 19: 2615-2616.

  • Dawson, Paul A., Huxley, S., Gardiner, B., Tran, T., McAuley, J. L., Grimmond, S. M., McGuckin, M. A. and Markovich, D. (2009) Reduced mucin sulfonation and impaired intestinal barrier function in the hyposulfataemic NaS1 null mouse. Gut, 58 7: 910-919.

  • Pang, K. C., Dinger, M. E., Mercer, T. R., Malquori, L, Grimmond, S. M., Chen, W. S. and Mattick, J. S. (2009) Genome-wide identification of long noncoding RNAs in CD8(+) T cells. Journal of Immunology, 182 12: 7738-7748.

  • Faulkner, Geoffrey J., Kimura, Yasumasa, Daub, Carsten O., Wani, Shivangi, Plessy, Charles, Irvine, Katharine M., Schroder, Kate, Cloonan, Nicole, Steptoe, Anita L., Lassmann, Timo, Waki, Kazunori, Hornig, Nadine, Arakawa, Takahiro, Takahashi, Hazuki, Kawai, Jun, Forrest, Alistair R. R., Suzuki, Harukazu, Hayashizaki, Yoshihide, Hume, David A., Orlando, Valerio, Grimmond, Sean M. and Carninci, Piero (2009) The regulated retrotransposon transcriptome of mammalian cells. Nature genetics, 41 5: 563-571.

  • Suzuki, H, Forrest, ARR, van Nimwegen, E, Daub, CO, Balwierz, PJ, Irvine, KM, Lassmann, T, Ravasi, T, Hasegawa, Y, de Hoon, MJL, Katayama, S, Schroder, K, Carninci, P, Tomaru, Y, Kanamori-Katayama, M, Kubosaki, A, Akalin, A, Ando, Y, Arner, E, Asada, M, Asahara, H, Bailey, T, Bajic, VB, Bauer, D, Beckhouse, AG, Bertin, N, Bjorkegren, J, Brombacher, F, Bulger, E, Chalk, AM, Chiba, J, Cloonan, N, Dawe, A, Dostie, J, Engstrom, PG, Essack, M, Faulkner, GJ, Fink, JL, Fredman, D, Fujimori, K, Furuno, M, Gojobori, T, Gough, J, Grimmond, SM, Gustafsson, M, Hashimoto, M, Hashimoto, T, Hatakeyama, M, Heinzel, S, Hide, W, Hofmann, O, Hornquist, M, Huminiecki, L, Ikeo, K, Imamoto, N, Inoue, S, Inoue, Y, Ishihara, R, Iwayanagi, T, Jacobsen, A, Kaur, M, Kawaji, H, Kerr, MC, Kimura, R, Kimura, S, Kimura, Y, Kitano, H, Koga, H, Kojima, T, Kondo, S, Konno, T, Krogh, A, Kruger, A, Kumar, A, Lenhard, B, Lennartsson, A, Lindow, M, Lizio, M, MacPherson, C, Maeda, N, Maher, CA, Maqungo, M, Mar, J, Matigian, NA, Matsuda, H, Mattick, JS, Meier, S, Miyamoto, S, Miyamoto-Sato, E, Nakabayashi, K, Nakachi, Y, Nakano, M, Nygaard, S, Okayama, T, Okazaki, Y, Okuda-Yabukami, H, Orlando, V, Otomo, J, Pachkov, M, Petrovsky, N, Plessy, C, Quackenbush, J, Radovanovic, A, Rehli, M, Saito, R, Sandelin, A, Schmeier, S, Schonbach, C, Schwartz, AS, Semple, CA, Sera, M, Severin, J, Shirahige, K, Simons, C, Laurent, GS, Suzuki, M, Suzuki, T, Sweet, MJ, Taft, RJ, Takeda, S, Takenaka, Y, Tan, K, Taylor, MS, Teasdale, RD, Tegner, J, Teichmann, S, Valen, E, Wahlestedt, C, Waki, K, Waterhouse, A, Wells, Christine A., Winther, O, Wu, L, Yamaguchi, K, Yanagawa, H, Yasuda, J, Zavolan, M, Hume, DA, Arakawa, T, Fukuda, S, Imamura, K, Kai, C, Kaiho, A, Kawashima, T, Kawazu, C, Kitazume, Y, Kojima, M, Miura, H, Murakami, K, Murata, M, Ninomiya, N, Nishiyori, H, Noma, S, Ogawa, C, Sano, T, Simon, C, Tagami, M, Takahashi, Y, Kawai, J, Hayashizaki, Y, FANTOM Consortium and Riken Omics Science Center (2009) The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nature Genetics, 41 5: 553-562.

  • Taft, RJ, Glazov, EA, Cloonan, N, Simons, C, Stephen, S, Faulkner, GJ, Lassmann, T, Forrest, ARR, Grimmond, SM, Schroder, K, Irvine, K, Arakawa, T, Nakamura, M, Kubosaki, A, Hayashida, K, Kawazu, C, Murata, M, Nishiyori, H, Fukuda, S, Kawai, J, Daub, CO, Hume, DA, Suzuki, H, Orlando, V, Carninci, P, Hayashizaki, Y and Mattick, JS (2009) Tiny RNAs associated with transcription start sites in animals. Nature Genetics, 41 5: 572-578.

  • Ragan, Chikako, Cloonan, Nicole, Grimmond, Sean M., Zuker, Michael and Ragan, Mark A. (2009) Transcriptome-wide prediction of miRNA targets in human and mouse using FASTH. PLoS One, 4 5: e5745.1-e5745.22.

  • Srikhanta, YN, Dowideit, SJ, Edwards, JL, Falsetta, ML, Wu, HJ, Harrison, OB, Fox, KL, Seib, KL, Maguire, TL, Wang, AHJ, Maiden, MC, Grimmond, SM, Apicella, MA and Jennings, MP (2009) Phasevarions mediate random switching of gene expression in pathogenic neisseria. PLoS Pathogens, 5 4: x-x.

  • Dinger, M. E., Pang, K. C., Mercer, T. R., Crowe, M. L., Grimmond, S. M. and Mattick, J. S. (2009) NRED: a database of long noncoding RNA expression. Nucleic Acids Research, 37 SUPPL. 1: D122-D126.

  • Brunskill, E. W., Aronow, B. J., Georgas, K., Rumballe, B., Valerius, M. T., Kaimal, V., Jegga, A. G., Grimmond, S., McMahon, A. P., Patterson, L. T., Little, M. H. and Potter, S. S. (2008) Atlas of Gene Expression in the Developing Kidney at Microanatomic Resolution. Developmental Cell, 15 5: 781-791.

  • Faulkner, G. J., Forrest, A. R. R., Chalk, A. M., Schroder, K., Hayashizaki, Y., Carninci, P., Hume, D. A. and Grimmond, S. M. (2008) A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE. Genomics, 91 3: 281-288.

  • Dawson, Paul Anthony, Gardiner, Brooke, Lee, Soohyun, Grimmond, Sean and Markovich, Daniel (2008) Kidney transcriptome reveals altered steroid homeostasis in NaS1 sulfate transporter null mice. Journal of Steroid Biochemistry And Molecular Biology, 112 1-3: 55-62.

  • Walker, Logan C., Waddell, Nic, Ten Haaf, Anette, kConFab Investigators, Grimmond, Sean and Spurdle, Amanda B. (2008) Use of expression data and the CGEMS genome-wide breast cancer association study to identify genes that may modify risk in BRCA1/2 mutation carriers. Breast Cancer Research and Treatment, 112 2: 229-236.

  • Cloonan, N. and Grimmond, S. M. (2008) Transcriptome content and dynamics at single-nucleotide resolution. Genome Biology, 9 9: 234.1-234.4.

  • Dinger, Marcel E., Amaral, Paulo P., Mercer, Tim R, Pang, Ken C., Bruce, Stephen J., Gardiner, Brooke B., Askarian-Amiri, Marjan E., Ru, Kelin, Solda, Giulia, Simons, Cas, Sunkin, Susan M., Crowe, Mark L., Grimmond, Sean M, Perkins, Andrew C. and Mattick, John S. (2008) Long Noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation. Genome Research, 18 9: 1433-1445.

  • Cloonan, Nicole, Brown, Mellissa K., Steptoe, Anita L., Wani, Shivangi, Chan, Wei Ling, Forrest, Alistair R. R., Kolle, Gabriel, Gabrielli, Brian and Grimmond, Sean M. (2008) The miR-17-5p microRNA is a key regulator of the G1/S phase cell cycle transition. Genome Biology, 9 8: R127.1-R127.14.

  • Cloonan, Nicole, Forrest, Alistair R. R., Kolle, Gabriel, Gardiner, Brooke B. A., Faulkner, Geoffrey J., Brown, Mellissa K., Taylor, Darrin F ., Steptoe, Anita L., Wani, Shivangi, Bethel, Graeme, Robertson, Alan J., Perkins, Andrew C., Bruce, Stephen J., Clarence, C. Lee, Ranade, Swati S., Peckham, Heather E, Manning, Jonathan M, McKernan, Kevin J and Grimmond, Sean M (2008) Stem cell transcriptome profiling via massive-scale mRNA sequencing. Nature Methods, 5 7: 613-619.

  • Waddell, N, Ten Haaf, A, Marsh, A, Johnson, J, Walker, LC, Gongora, M, Brown, M, Grover, P, Girolami, M, Grimmond, S, Chenevix-Trench, G, Spurdle, AB and kConFab Investigators (2008) BRCA1 and BRCA2 missense variants of high and low clinical significance influence lymphoblastoid cell line post-irradiation gene expression. PLoS Genetics, 4 5: Article Number: e1000080.

  • Deutsch, E. W., Ball, C. A., Berman, J. J., Bova, G. S., Brazma, A., Burngarner, R. E., Campbell, D., Grimmond, S. M. and Henrich, T. (2008) Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE). Nature Biotechnology, 26 3: 305-312.

  • McMahon, A. P,, Aronow, B. J., Davidson, D. R., Davies, J. A., Gaido, K. W., Grimmond, S., Lessard, J. L., Little, M. H., Zhang, P., Potter, S.S. and Wilder, E.L. (2008) GUDMAP: the genitourinary developmental molecular anatomy project. Journal of the American Society of Nephrology, 19 4: 667-671.

  • Bruce, Stephen J., Gardiner, Brooke B., Burke, Les J., Gongora, Milena, Grimmond, Sean M. and Perkins, Andrew C. (2007) Dynamic transcription programs during ES cell differentiation towards mesoderm in serum versus serum-free (BMP4) culture. BMC Genomics, 8 : 1-26.

  • Laslett, Andrew L., Grimmond, Sean, Gardiner, Brooke, Stamp, Lincon, Lin, Adelia, Hawes, Susan M, Wormald, Sam, Nikolic-Paterson, David, Haylock, David and Pera, Martin F. (2007) Transcriptional analysis of early lineage commitment in human embryonic stem cells. BMC Developmental Biology, 7 12: 1-18.

  • Gardiner, M. R., Gongora, M. M., Grimmond, S. M. and Perkins, A. C. (2007) A global role for zebrafish klf4 in embryonic erythropoiesis. Mechanisms of Development, 124 9-10: 762-774.

  • Rae, Fiona, Woods, Kyra, Sasmono, Tedjo, Campanale, Naomi, Taylor, Darrin, Ovchinnikov, Dmitry A., Grimmond, Sean M., Hume, David A., Ricardo, Sharon D. and Little, Melissa H. (2007) Characterisation and trophic functions of murine embryonic macrophages based upon the use of a Csf1r-EGFP transgene reporter. Developmental Biology, 308 1: 232-246.

  • Seib, KL, Wu, HJ, Srikhanta, YN, Edwards, JL, Falsetta, ML, Hamilton, AJ, Maguire, TL, Grimmond, SM, Apicella, MA, McEwan, AG and Jennings, MP (2007) Characterization of the OxyR regulon of Neisseria gonorrhoeae. Molecular Microbiology, 63 1: 54-68.

  • Waddell, Nic, Jonnalagadda, Jyoti, Marsh, Anna, Grist, Scott, Jenkins, Mark, Hobson, Karen, Taylor, Malcolm, Lindeman, Geoff J., Tavtigian, Sean V., Suthers, Graeme, Goldgar, David, Oefner, Peter J., kConFab Investigators, Taylor, Darrin, Grimmond, Sean, Khanna, Kum Kum and Chenevix-Trench, Georgia (2006) Characterization of the breast cancer associated ATM 7271T>G (V2424G) mutation by gene expression profiling. Genes Chromosomes and Cancer, 45 12: 1169-1181.

  • Martinez, Gemma, Georgas, Kylie, Challen, Grant A., Rumballe, Bree, Davis, Melissa J., Taylor, Darrin, Teasdale, Rohan D., Grimmond, Sean M. and Little, Melissa H. (2006) Definition and spatial annotation of the dynamic secretome during early kidney development. Developmental Dynamics, 235 6: 1709-1719.

  • Hodge, Denise, Coghill, Elise, Keys, Janelle, Maguire, Tina, Hartmann, Belinda, McDowall, Alasdair, Weiss, Mitchell, Grimmond, Sean and Perkins, Andrew C. (2006) A global role for EKLF in definitive and primitive erythropoiesis. Blood, 107 8: 3359-3370.

  • Forrest, Alistair R. R., Taylor, Darrin F., Fink, J. Lynn, Gongora, M. Milena, Flegg, Cameron, Teasdale, Rohan D., Suzuki, Harukazu, Kanamori, Mutsumi, Kai, Chikatoshi, Hayashizaki, Yoshihide and Grimmond, Sean M. (2006) PhosphoregDB: The tissue and sub-cellular distribution of mammalian protein kinases and phosphatases. BMC Bioinformatics, 7 82: 1-11.

  • Wells, CA, Chalk, AM, Forrest, A, Taylor, D, Waddell, N, Schroder, K, Himes, SR, Faulkner, G, Lo, S, Kasukawa, T, Kawaji, H, Kai, C, Kawai, J, Katayama, S, Carninci, P, Hayashizaki, Y, Hume, DA and Grimmond, SM (2006) Alternate transcription of the Toll-like receptor signaling cascade. Genome Biology, 7 2: R10.1-R10.17.

  • Forrest, Alistair R. R., Taylor, Darrin F., Crowe, Mark L., Chalk, Alistair M., Waddell, Nic J., Kolle, Gabriel, Faulkner, Geoffrey J., Kodzius, Rimantas, Katayama, Shintaro, Wells, Christine, Kai, Chikatoshi, Kawai, Jun, Carninci, Piero, Hayashizaki, Yoshihide and Grimmond, Sean M. (2006) Genome-wide review of transcriptional complexity in mouse protein kinases and phosphatases. Genome Biology, 7 1: R5.1-R5.15.

  • Deutsch, Eric W., Ball, Catherine A., Bova, G. Steven, Brazma, Alvis, Bumgarner, Roger E., Campbell, David, Causton, Helen C., Christiansen, Jeff, Davidson, Duncan, Eichner, Lillian J., Goo, Young Ah, Grimmond, Sean M., Henrich, Thorsten, Johnson, Michael H. and Korb, M. (2006) Development of the Minimum Information Specification for in situ Hybridization and Immunohistochemistry Experiments (MISFISHIE). Omics-a Journal of Integrative Biology, 10 2: 205-208.

  • Mitchell, E. K. L., Taylor, D. F., Woods, K., Davis, M. J., Nelson, A. L., Teasdale, R. D., Grimmond, S. M., Little, M. H., Bertram, J. F. and Caruana, G. (2006) Differential gene expression in the developing mouse ureter. Gene Expression Patterns, 6 5: 519-538.

  • Ravasi, T., Suzuki, H., Pang, K. C., Katayama, S., Furuno, M., Okunishi, R., Fukuda, S., Ru, K., Frith, M., Gongora, M., Grimmond, S., Hume, D. A., Hayashizaki, Y. and Mattick, J. S. (2006) Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome. Genome Research, 16 1: 11-19.

  • Carninci, Piero, Sandelin, Albin, Lenhard, Boris, Frith, Martin C., Forrest, Alistair R. R., Ravasi, Timothy, Grimmond, Sean M., Wells, Christine A., Hume, David A. and Hayashizaki, Yoshihide (2006) Genome-wide analysis of mammalian promoter architecture and evolution. Nature Genetics, 38 6: 626-635.

  • Wu, H. J., Seib, K. L., Srikhanta, Y. N., Kidd, S. P., Edwards, J. L., Maguire, T. L., Grimmond, S. M., Apicella, M. A., McEwan, A. G. and Jennings, M. P. (2006) PerR controls Mn-dependent resistance to oxidative stress in Neisseria gonorrhoeae. Molecular Microbiology, 60 2: 401-416.

  • Caruana, Georgina, Cullen-McEwen, Luise, Nelson, Amy L., Kostoulias, Xenia, Woods, Kyra, Gardiner, Brooke, Davis, Melissa J., Taylor, Darrin F., Teasdale, Rohan D., Grimmond, Sean M., Little, Melissa H. and Bertram, John F. (2006) Spatial gene expression in the T-stage mouse metanephros. Gene Expression Patterns, 6 8: 807-825.

  • Aturaliya,Rajith N., Fink, J. Lynn, Davis, Melissa J., Hanson, Kelly A., Miranda,Kevin C., Forrest,Alistair R. R., Grimmond, Sean M., Suzuki,Harukazu, Kanamori,Mutsumi, Kai,Chikatoshi, Kawai,Jun, Carninci,Piero, Hayashizaki,Yoshihide and Teasdale,Rohan D. (2006) Subcellular localization of mammalian type II membrane proteins. Traffic, 7 5: 613-625.

  • Frith, Martin C., Forrest, Alistair R., Nourbakhsh, Ehsan, Pang, Ken C., Kai, Chikatoshi, Kawai, Jun, Carnici, Piero, Hayashizaki, Yoshihide, Bailey, Timothy L. and Grimmond, Sean M. (2006) The abundance of short proteins in the mammalian proteome. Plos Genetics, 2 4: 515-528.

  • Dawson, P. A., Gardiner, B., Grimmond, S. and Markovich, D. (2006) Transcriptional profile reveals altered hepatic lipid and cholesterol metabolism in hyposulfatemic NaS1 null mice. Physiological Genomics, 26 2: 116-124.

  • McGlinn, Edwina, Lammerts van Bueren, Kelly, Fiorenza, Salvatore, Mo, Rong, Poh, Alisa M., Forrest, Alistair, Soares, Marcelo Bento, Bonaldo, Maria de Fatima, Grimmond, Sean, Hui, Chi-chung, Wainwright, Brandon and Wicking, Carol (2005) Pax9 and Jagged1 act downstream of Gli3 in vertabrate limb development. Mechanisms of Development, 122 11: 1218-1233.

  • The FANTOM Consortium, Gough, J., Frith, M. C., Ravasi, T., Wells, C., Forrest, A. R. R., Davis, M. J., Aturaliya, R. N., Bailey, T. L., Crowe, M. L., Faulkner, G., Pang, K. C., Teasdale, R. D., Grimmond, S. M., Mattick, J. S., Hume, D. A. and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Core Team) (2005) The transcriptional landscape of the mammalian genome. Science, 309 5740: 1559-1563.

  • Challen, G., Gardiner, B., Caruana, G., Kostoulias, X., Martinez, G., Crowe, M., Taylor, D. F., Bertram, J., Little, M. and Grimmond, S. M. (2005) Temporal and spatial transcriptional programs in murine kidney development. Physiological Genomics, 23 2: 159-171.

  • Srikhanta, Y. N., Maguire, T. L., Stacey, K. J., Grimmond, S. M. and Jennings, M. P. (2005) The phasevarion: A genetic system controlling coordinated, random switching of expression of multiple genes. Proceedings of The National Academy of Sciences of The United States of America, 102 15: 5547-5551.

  • Timmins, N. E., Maguire, T. L., Grimmond, S. M. and Nielsen, L. K. (2004) Identification of three gene candidates for multicellular resistance in colon carcinoma. Cytotechnology, 46 1: 9-18.

  • Challen, G. A., Martinez, G., Davis, M. J., Taylor, D. F., Crowe, M., Teasdale, R. D., Grimmond, S. M. and Little, M. H. (2004) Identifying the molecular phenotype of renal progenitor cells. Journal of The American Society of Nephrology, 15 9: 2344-2357.

  • Rae, F. K., Martinez, G., Gillinder, K. R., Smith, A., Shooter, G., Forrest, A. R., Grimmond, S. M. and Little, M. H. (2004) Anlaysis of complementary expression profiles following WT1 induction versus repression reveals the cholesterol/fatty acid synthetic pathways as a possible major target of WT1. Oncogene, 23 17: 3067-3079.

  • Gustincich, Stefano, Batalov, Serge, Beisel, Kirk W., Bona, Hidemasa, Carninci, Piero, Fletcher, Colin F., Grimmond, Sean, Hirokawa, Nobutaka, Jarvis, Erich D., Jegla, Tim, Kawasawa, Yuka, LeMieux, Julianna, Miki, Harukata, Raviola, Elio, Teasdale, Rohan D., Tominaga, Naoko, Yagi, Ken, Zimmer, Andreas, RIKEN GER Group, GSL Members, Hayashizaki, Yoshihide and Okazaki, Yasushi (2003) Analysis of the mouse transcriptome for genes involved in the function of the nervous system. Genome Research, 13 6B: 1395-1401.

  • Forrest, Alistair R. R., Ravasi, Timothy, Taylor, Darrin, Huber, Thomas L., Hume, David A., RIKEN GER Group, GSL Members and Grimmond, Sean (2003) Phosphoregulators: Protein kinases and protein phosphatases of mouse. Genome Research, 13 6B: 1443-1454.

  • Ashton, K. J., Holmgren, K., Peart, J., Lankford, A. R., Matherne, G. P., Grimmond, S. and Headrick, J. P. (2003) Effects of A1 adenosine receptor overexpression on normoxic and post-ischemic gene expression. Cardiovascular Research, 57 3: 715-726.

  • Sousa-Nunes, R., Rana, A. A., Kettleborough, R., Brickman, J. M., Clements, M., Forrest, A., Grimmond, S., Avner, P., Smith, J. C. and Dunwoodie, S. L. (2003) Characterizing embryonic gene expression patterns in the mouse using nonredundant sequence-based selection. Genome Research, 13 12: 2609-2620.

  • Forrest, A. R., Taylor, D., RIKEN GER Group,, GSL Members, and Grimmond, S. M. (2003) Exploration of the cell-cycle genes found within the RIKEN FANTOM2 data set. Genome Research, 13 6B: 1366-1375.

  • Kanapin, A., Batalov, S., Davis, M., Gough, J., Grimmond, S. M., Kawaji, H., Magrane, M., Matsuda, H., Schonbach, C., Teasdale, R. D., RIKEN GER Group,, GSL Members, and Yuan, Z. (2003) Mouse proteome analysis. Genome Research, 13 6B: 1335-1344.

  • Ravasi, T., Huber, T. L., Zavolan, M., Forrest, A. R., Gaasterland, T., Grimmond, S. M., RIKEN GER Group,, GSL Members, and Hume, D. A. (2003) Systematic characterization of the zinc-finger-containing proteins in the mouse transcriptome. Genome Research, 13 6B: 1430-1442.

  • Grimmond, Sean M., Miranda, Kevin C., Yuan, Zheng, Davis, Melissa J., Hume, David A., Yagi, Ken, Tominaga, Naoko, Bono, Hidemasa, Hayashizaki, Yoshihide, Okazaki, Yasushi, RIKEN GER Group,, GSL Members, and Teasdale, Rohan D. (2003) The mouse secretome: functional classification of the proteins secreted into the extracellular environment. Genome Research, 13 6B: 1350-1359.

  • Ravasi, T., Wells, C., Forrest, A., Walsh, N., Underhill, D. M., Wainwright, B. J., Aderem, A., Grimmond, S. and Hume, D. A. (2002) Generation of Diversity in the Innate Immune System: Macrophage Heterogeneity Arises From Gene-Autonomous Transcriptional Probability of Individual Inducible Genes. Journal of Immunology, 168 1: 44-50.

  • Ingram, W. J., Wicking, C. A., Grimmond, S. M., Forrest, A. R. and Wainwright, B. J. (2002) Novel genes regulated by Sonic Hedgehog in pluripotent mesenchymal cells. Oncogene, 21 53: 8196-8205.

  • Maguire, T. L., Grimmond, S., Forrest, A., Iturbe-Ormaetxe, I., Meksem, K. and Gresshoff, P. (2002) Tissue-specific gene expression in soybean (Glycine max) detected by cDNA microarray analysis. Journal of Plant Physiology, 159 12: 1361-1374.

  • Grimmond, S., Larder, R., Van Hateren, N., Siggers, P., Morse, S., Hacker, T., Arkell, R. and Greenfield, A. (2001) Expression of a novel mammalian epidermal growth factor-related gene during mouse neural development. Mechanisms of Development, 102 1-2: 209-211.

  • Clyde-Smith, J., Silins, G., Gartside, M., Grimmond, S., Etheridge, M., Apolloni, A., Hayward, N. and Hancock, J. F. (2000) Characterization of RasGRP2, a plasma membrane-targeted, dual specificity Ras/Rap exchange factor. Journal of Biological Chemistry, 275 41: 32260-32267.

  • Grimmond, S., van Hateren, N., Siggers, P., Arkell, R., Soares, M. B., Bonaldo, M. D., Smith, L., Wells, C. and Greenfield, A. (2000) Sexually dimorphic expression of protease nexin-1 and vanin-1 in the developing mouse gonad prior to overt differentiation suggests a role in mammalian sexual development. Human Molecular Genetics, 9 10: 1553-1560.

  • Bellomo, D., Headrick, J. P., Silins, G. U., Paterson, C. A., Thomas, P. S., Gartside, M., Mould, A., Cahill, M. M., Tonks, I. D., Grimmond, S. M., Wells, C. A., Little, M. H., Cummings, M. C., Hayward, N. K. and Kay, G. F. (2000) Mice lacking the vascular endothelial growth factor-B gene (Vegfb) have smaller hearts, dysfunctional coronary vasculature, and impaired recovery from cardiac ischemia. Circulation Research, 86 2: E29-E35.

  • Bergman, L., Boothroyd, C., Palmer, J., Grimmond, S., Walters, M., Teh, B., Shepherd, J., Hartley, L. and Hayward, N. (2000) Identification of somatic mutations of the MEN1 gene in sporadic endocrine tumours. British Journal of Cancer, 83 8: 1003-1008.

  • Bergman, L., Silins, G., Grimmond, S., Hummerich, H., Stewart, C., Little, P. and Hayward, N. (1999) A 500-kb sequence-ready cosmid contig and transcript map of the MEN1 region on 11q13. Genomics, 55 1: 49-56.

Conference Publication

  • Chin, V. T., Waddell, N., Nones, K., Quek, K., Mawson, A., Johns, A., Grimmond, S. and Biankin, A. (2012). Individualised Measurement of Tumour-Derived Circulating Dna in Patients with Pancreatic Cancer: a Marker of Prognosis and Therapeutic Response. In: Medical Oncology Group of Australia Incorporated Annual Scientific Meeting, Brisbane, QLD, Australia, (36-36). 8-10 August 2012.

  • Pattabiraman, Diwakar R., Shakhbazov, Konstantin, Barbier, Valerie, McGirr, Crystal, Krishnan, Keerthana, Mukhopadhyay, Pamela, Hawthorne, Paula, Trezise, Ann, Grimmond, Sean, Papathanasiou, Peter, Perkins, Andrew C., Levesque, Jean-Pierre, Alexander, Warren S., Winkler, Ingrid G. and Gonda, Thomas J. (2012). Interaction of c-Myb with p300 is required for the induction of acute myeloid leukemia by human AML oncogenes, and represents a potential therapeutic target. In: , ASH Annual Meeting Abstracts. 54th Annual Meeting and Exposition of the American-Society-of-Hematology (ASH), Atlanta, GA, United States, (). 8-11 Deceember, 2012.

  • Pajic, M., Chang, D. K., Kassahn, K. S., Wu, J., Cowley, M., Waddell, N., Johns, A., Grimmond, S. M. and Biankin, A. V. (2012). Proffered Paper: Testing Individualised Treatment Strategies in Preclinical Models of Pancreatic Cancer. In: , Abstracts of the 22nd Biennial Congress of the European Association for Cancer Research. 22nd Biennial Congress of the European Association for Cancer Research, Barcelona Spain, (S22-S22). 07-10 July 2012.

  • Johns, AL, Zeps, N, Chantrill, L, Gill, AJ, Chang, DK, Scarlett, CJ, Grimmond, SM and Biankin, AV (2011). Returning Genetic Research Results to Individuals: The International Cancer Genome Consortium Initiative Experience. In: , Pancreas. Unknown, unknown, (1329-1329). Unknown.

  • Johns, A. L., Colvin, E. K., Pinese, M., Gill, A. J., Hruban, R. H., Eshleman, J. R., Maitra, A., Grimmond, S. M. and Biankin, A. V. (2009). Development of a biological resource for genomic characterisation of pancreatic cancer. In: , Abstracts of Papers Submitted to the Joint 40th Anniversary Meeting of American Pancreatic Association and Japan Pancreas Society. Joint 40th Anniversary Meeting of American Pancreatic Association and Japan Pancreas Society, Honolulu, Hawaii, United States, (1011-1011). 4-7 November 2009.

  • Tallack, M, Whitington, T, Gardiner, B, Wainwright, E, Keys, J, Monet, M, Nourbakhsh, E, Cloonan, N, Grimmond, S, Bailey, T and Perkins, AC (2009). Klf1 regulatory networks in primary erythroid cells. In: , Blood. 51st Annual Meeting of the American-Society-of-Hematology, New Orleans, LA, U.S.A., (591-591). 5-8 December 2009.

  • Gardiner, M. R., Gongora, M., Gardiner, B., Grimmond, S. and Perkins, A. C. (2007). Zebrafish klf4 plays a global role in primitive erythropoiesis. In: , Blood Cells, Molecules, and Diseases. 15th Conference on Hemoglobin Switching, Oxford, England, (169-169). 14-18 September 2006.

  • Perkins, A. C., Bruce, S., Dinger, M., Gardiner, B., Steptoe, A., Burke, L., Mattick, J. S. and Grimmond, S. M. (2006). Transcription factors, non-coding RNAs and ES cell differentiation in vitro and in vivo. In: , Transgenic Research. 7th Transgenic Technology Meeting (TT2007), Brisbane, Australia, (778-778). 12-14 February, 2007.

  • Perkins, Andrew C., Coghill, Elise, Maguire, Tina, Hartmann, Belinda, McDowall, Alasdair, Weiss, Mitchell, Grimmond, Sean, Keys, Janelle and Hodge, Denise (2005). A global role for EKLF in definitive and primitive erythropoiesis. In: , Blood. ASH Annual Meeting Abstracts. 47th American Society of Hematology Annual Meeting, New Orleans, USA, (496A-496A). 3-6 December 2005.

  • Iqbal, M. J., Maguire, T. L., Meksem, K., Yegaeshi, S., Triwitayakorn, K., Schulz, J., Grimmond, S. M., Gresshoff, P.M. and Lightfoot, D. (2002). A comparison by cDNA microarray of mRNA abundance in Glycine max and Arabidopsis thaliana roots in response to Fusarium solani f.sp. glycines infection. In: , The International Conference on the Status of Plant, Animal and Microbe Genomes Research. International Plant & Animal Genome Conference, San Diego, (260-260). 12-16 January 2002.

  • Maguire, T. L., Grimmond, S. M., Forrest, A. R., Iturbe-Ormaeche, I., Meksem, K. and Gresshoff, P.M. (2002). CDNA microarray analysis of soybean: monitoring expression profiles of 4,100 genes. In: , The International Conference on the Status of Plant, Animal and Microbe Genomes Research. International Plant & Animal Genome Conference, San Diego, (45-45). 12-16 January 2002.

  • Gresshoff, P.M., Stiller, J., Maguire, T. L., Lohar, D., Ayanru, T., Buzas, D. M., Hababunga, S., Smith, L., Carroll, B. J., Searle, I. R., Meksem, K., Lightfoot, D., Grimmond, S. M. and Men, A. (2002). Integrated functional genomics to define the plant's function is symbiotic nodulation. In: T.M. Finan, M.R. O'Brian, D.B. Layzell, J.K. Vessey and W. Newton, Proceedings of the 13th International Congress on Nitrogen Fixation. Nitrogen Fixation: Global Perspectives Proceedings of the 13th International Congress on Nitrogen Fixation, Hamilton, Ontario, Canada, (95-98). 2-7 July 2001.

  • Gresshoff, P.M., Men, A., Maguire, T. L., Grimmond, S. M., Lohar, D., Ayanru, T. S., Meksem, K., Lightfoot, D. and Stiller, J. (2001). An integrated functional genomics and genetics approach for the plant's function in symbiotic nodulation. In: G. Spangenberg, Molecular Breeding of Forage Crops: Proceedings of the 2nd International Symposium, Molecular Breeding of Forage Crops. 2nd International Symposium, Molecular Breeding of Forage Crops, Lorne and Hamilton, Victoria, Australia, (275-283). 19-24 November 2000.

  • Gresshoff, P. M., Maguire, T. L., Anderson, D., Grimmond, S. M., Carroll, B. J., Searle, I. R., Ayanru, T.S., Lohar, D., Stiller, J. and Men, A. (2001). Functional genomic analysis of nodulation in legumes. In: G. Spangenberg, Molecular Breeding of Forage Crops: Proceedings of the 2nd International Symposium, Molecular Breeding of Forage Crops. 2nd International Symposium, Molecular Breeding of Forage Crops, Lorne and Hamilton, Victoria, Australia, (). 19-24 November 2000.

  • Gresshoff, P. M., Men, A., Maguire, T. L., Grimmond, S. M., Lohar, D., Ayanru, T. S., Meksem, K., Lightfoot, D. T. and Stiller, J. (2000). An integrated functional genomics and genetics approach for the plant's function in symbiotic nodulation. In: , Lotus japonicus Workshop. Lotus japonicus Workshop, Japan, (). 10-11 Nov, 2000.

  • Gresshoff, P. M., Men, A., Stiller, J., Maguire, T. L., Grimmond, S. and Anderson, D. (2000). Functional genomics in plants. In: , 15th Australiasian Biotechnology Conference. ABA 2000 Biotechnology: Our Passport to the Next Millenium, Brisbane, (). 2-6 July, 2000.

  • Gresshoff, P. M., Men, A., Maguire, T. L., Grimmond, S. M., Lohar, D., Ayanru, T. S., Meksem, K., Lightfoot, D.T. and Stiller, J. (2000). Isolation of nodule and root genes using promoter-trapping in Lotus japonicus. In: , Lotus japonicus Workshop. Lotus japonicus Workshop, Japan, (). 10-11 Nov, 2000.

Grants (Administered at UQ)

PhD and MPhil Supervision

Current Supervision

  • Doctor Philosophy — Principal Advisor

  • Doctor Philosophy — Associate Advisor

    Other advisors:

  • Doctor Philosophy — Principal Advisor

Completed Supervision