Journal Article: Transcriptome changes in the developing sugarcane culm associated with high yield and early-season high sugar content
Perlo, Virginie, Margarido, Gabriel R. A., Botha, Frederik C., Furtado, Agnelo, Hodgson-Kratky, Katrina, Correr, Fernando H. and Henry, Robert J. (2022). Transcriptome changes in the developing sugarcane culm associated with high yield and early-season high sugar content. Theoretical and Applied Genetics, 135 (5), 1619-1636. doi: 10.1007/s00122-022-04058-3
Journal Article: Limited allele-specific gene expression in highly polyploid sugarcane
Rodrigues Alves Margarido, Gabriel, Correr, Fernando Henrique, Furtado, Agnelo, Botha, Frederik C. and Henry, Robert J. (2021). Limited allele-specific gene expression in highly polyploid sugarcane. Genome Research, 32 (2), 297-308. doi: 10.1101/gr.275904.121
Journal Article: Association of gene expression with syringyl to guaiacyl ratio in sugarcane lignin
Hodgson-Kratky, K., Perlo, V., Furtado, A., Choudhary, H., Gladden, J. M., Simmons, B. A., Botha, F. and Henry, R. J. (2021). Association of gene expression with syringyl to guaiacyl ratio in sugarcane lignin. Plant Molecular Biology, 106 (1-2), 173-192. doi: 10.1007/s11103-021-01136-w
Suitable sugarcane to diversify income and add value
(2020–2023) CRC for Developing Northern Australia
The molecular analysis of yellow canopy syndrome-induced yellowing in the sugarcane leaf
(2019) Doctor Philosophy
Techno-economic analysis of options for the use of sugarcane bagasse as a source of chemicals and energy
Doctor Philosophy
Metabolic and Transcriptomic Changes in the Developing Sugarcane Culm Associated with High Yield and Early-Season High Sugar Content.
(2021) Doctor Philosophy
Advances in understanding of sugarcane plant growth and physiology
Botha, Frederik C. (2018). Advances in understanding of sugarcane plant growth and physiology. Achieving sustainable cultivation of sugarcane volume 2: breeding, pests and diseases. (pp. 35-58) edited by Philippe Rott. Sawston, United Kingdom: Burleigh Dodds Science Publishing. doi: 10.19103/AS.2017.0035.03
Perlo, Virginie, Margarido, Gabriel R. A., Botha, Frederik C., Furtado, Agnelo, Hodgson-Kratky, Katrina, Correr, Fernando H. and Henry, Robert J. (2022). Transcriptome changes in the developing sugarcane culm associated with high yield and early-season high sugar content. Theoretical and Applied Genetics, 135 (5), 1619-1636. doi: 10.1007/s00122-022-04058-3
Limited allele-specific gene expression in highly polyploid sugarcane
Rodrigues Alves Margarido, Gabriel, Correr, Fernando Henrique, Furtado, Agnelo, Botha, Frederik C. and Henry, Robert J. (2021). Limited allele-specific gene expression in highly polyploid sugarcane. Genome Research, 32 (2), 297-308. doi: 10.1101/gr.275904.121
Association of gene expression with syringyl to guaiacyl ratio in sugarcane lignin
Hodgson-Kratky, K., Perlo, V., Furtado, A., Choudhary, H., Gladden, J. M., Simmons, B. A., Botha, F. and Henry, R. J. (2021). Association of gene expression with syringyl to guaiacyl ratio in sugarcane lignin. Plant Molecular Biology, 106 (1-2), 173-192. doi: 10.1007/s11103-021-01136-w
Marquardt, Annelie, Henry, Robert J. and Botha, Frederik C. (2021). Effect of sugar feedback regulation on major genes and proteins of photosynthesis in sugarcane leaves. Plant Physiology and Biochemistry, 158, 321-333. doi: 10.1016/j.plaphy.2020.11.022
Perlo, Virginie, Botha, Frederik C., Furtado, Agnelo, Hodgson‐Kratky, Katrina and Henry, Robert J. (2020). Metabolic changes in the developing sugarcane culm associated with high yield and early high sugar content. Plant Direct, 4 (11) e00276, e00276. doi: 10.1002/pld3.276
Relationship between sugarcane culm and leaf biomass composition and saccharification efficiency
Hodgson-Kratky, K., Papa, G., Rodriguez, A., Stavila, V., Simmons, B., Botha, F., Furtado, A. and Henry, R. (2019). Relationship between sugarcane culm and leaf biomass composition and saccharification efficiency. Biotechnology for Biofuels, 12 (1) 247, 247. doi: 10.1186/s13068-019-1588-3
Midrib sucrose accumulation and sugar transporter gene expression in YCS-affected sugarcane leaves
Marquardt, Annelie, Henry, Robert J. and Botha, Frederik C. (2019). Midrib sucrose accumulation and sugar transporter gene expression in YCS-affected sugarcane leaves. Tropical Plant Biology, 12 (3), 186-205. doi: 10.1007/s12042-019-09221-7
Thirugnanasambandam, Prathima P., Mason, Patrick J., Hoang, Nam V., Furtado, Agnelo, Botha, Frederik C. and Henry, Robert J. (2019). Analysis of the diversity and tissue specificity of sucrose synthase genes in the long read transcriptome of sugarcane. BMC Plant Biology, 19 (1) 160, 160. doi: 10.1186/s12870-019-1733-y
The impact of cDNA normalization on long-read sequencing of a complex transcriptome
Hoang, Nam V., Furtado, Agnelo, Perlo, Virginie, Botha, Frederik C. and Henry, Robert (2019). The impact of cDNA normalization on long-read sequencing of a complex transcriptome. Frontiers in Genetics, 10 (JUN) 654, 654. doi: 10.3389/fgene.2019.00654
Kasirajan, Lakshmi, Hoang, Nam V., Furtado, Agnelo, Botha, Frederik C. and Henry, Robert J. (2018). Transcriptome analysis highlights key differentially expressed genes involved in cellulose and lignin biosynthesis of sugarcane genotypes varying in fiber content. Scientific Reports, 8 (1) 11612, 11612. doi: 10.1038/s41598-018-30033-4
There's yellow, and then there's yellow-which one is YCS?
Marquardt, Annelie, Wathen-Dunn, Kate, Henry, Robert J. and Botha, Frederik C. (2018). There's yellow, and then there's yellow-which one is YCS?. International Sugar Journal, 120 (1432), 304-310.
Hoang, Nam V., Furtado, Agnelo, Thirugnanasambandam, Prathima P., Botha, Frederik C. and Henry, Robert J. (2018). De novo assembly and characterizing of the culm-derived meta-transcriptome from the polyploid sugarcane genome based on coding transcripts. Heliyon, 4 (3) e00583, e00583. doi: 10.1016/j.heliyon.2018.e00583
Association of variation in the sugarcane transcriptome with sugar content
Thirugnanasambandam, Prathima P, Hoang, Nam V, Furtado, Agnelo, Botha, Frederick C and Henry, Robert J (2017). Association of variation in the sugarcane transcriptome with sugar content. BMC genomics, 18 (909) 909, 1-22. doi: 10.1186/s12864-017-4302-5
Yellow Canopy Syndrome (YCS) in sugarcane is associated with altered carbon partitioning in the leaf
Marquardt, Annelie, Scalia, Gerard, Wathen-Dunn, Kate and Botha, Frederik C. (2017). Yellow Canopy Syndrome (YCS) in sugarcane is associated with altered carbon partitioning in the leaf. Sugar Tech, 19 (6), 1-9. doi: 10.1007/s12355-017-0555-1
Association of gene expression with biomass content and composition in sugarcane
Hoang, Nam V., Furtado, Agnelo, O'Keeffe, Angela J., Botha, Frederik C. and Henry, Robert J. (2017). Association of gene expression with biomass content and composition in sugarcane. PLoS One, 12 (8) e0183417, e0183417. doi: 10.1371/journal.pone.0183417
Hoang, Nam V., Furtado, Agnelo, Mason, Patrick J., Marquardt, Annelie, Kasirajan, Lakshmi, Thirugnanasambandam, Prathima P., Botha, Frederik C. and Henry, Robert J. (2017). A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing. BMC Genomics, 18 (1) 395, 395. doi: 10.1186/s12864-017-3757-8
Sugarcane RD&E: over managed and underperforming?
Botha, Frederik C. (2017). Sugarcane RD&E: over managed and underperforming?. Sugar Industry, 142 (2), 104-111. doi: 10.36961/si18168
High-throughput profiling of the fiber and sugar composition of sugarcane biomass
Hoang, Nam V., Furtado, Agnelo, Donnan, Laura, Keeffe, Eloise C., Botha, Frederik C. and Henry, Robert J. (2016). High-throughput profiling of the fiber and sugar composition of sugarcane biomass. Bioenergy Research, 10 (2), 1-17. doi: 10.1007/s12155-016-9801-8
Marquardt, Annelie, Scalia, Gerard, Joyce, Priya, Basnayake, Jaya and Botha, Frederik C. (2016). Changes in photosynthesis and carbohydrate metabolism in sugarcane during the development of Yellow Canopy Syndrome. Functional Plant Biology, 43 (6), 523-533. doi: 10.1071/FP15335
Boussiengui-Boussiengui, Gino, Groenewald, Jan-Hendrik and Botha, Frederik C. (2015). Metabolic Changes Associated with the Sink-Source Transition During Sprouting of the Axillary Buds on the Sugarcane Culm. Tropical Plant Biology, 9 (1), 1-11. doi: 10.1007/s12042-015-9158-8
Potential for genetic improvement of sugarcane as a source of biomass for biofuels
Hoang, Nam V., Furtado, Agnelo, Botha, Frederik C., Simmons, Blake A. and Henry, Robert J. (2015). Potential for genetic improvement of sugarcane as a source of biomass for biofuels. Frontiers in Bioengineering and Biotechnology, 3 (NOV) 182, 1-15. doi: 10.3389/fbioe.2015.00182
Selecting for greater profitability
Botha, Frikkie (2014). Selecting for greater profitability. Australasian Biotechnology, 24 (3), 54-55.
Perlo, Virginie, Furtado, Agnelo, Botha, Frikkie and Henry, Robert (2020). Analysis of differences in gene expression associated with variation in biomass composition in sugarcane. The Third International Tropical Agriculture Conference, Brisbane, QLD Australia, 13-13 November 2019. Basel, Switzerland: MDPI. doi: 10.3390/proceedings2019036164
There's yellow, and then there's yellow-Which one is YCS?
Marquardt, Annelie, Wathen-Dunn, Kate, Henry, Robert J. and Botha, Frederik C. (2017). There's yellow, and then there's yellow-Which one is YCS?. 39th Conference of the Australian Society of Sugar Cane Technologists (ASSCT 2017), Cairns, Australia, 3-5 May 2017. Red Hook, NY: Curran Associates.
Suitable sugarcane to diversify income and add value
(2020–2023) CRC for Developing Northern Australia
Techno-economic analysis of options for the use of sugarcane bagasse as a source of chemicals and energy
Doctor Philosophy — Associate Advisor
Other advisors:
The molecular analysis of yellow canopy syndrome-induced yellowing in the sugarcane leaf
(2019) Doctor Philosophy — Principal Advisor
Other advisors:
Metabolic and Transcriptomic Changes in the Developing Sugarcane Culm Associated with High Yield and Early-Season High Sugar Content.
(2021) Doctor Philosophy — Associate Advisor
Other advisors:
Analysis of biomass traits in sugarcane (Saccharum spp. hybrids)
(2020) Doctor Philosophy — Associate Advisor
Other advisors:
Investigating the transcriptional control of UDP-Glucose metabolism in Sugarcane
(2020) Doctor Philosophy — Associate Advisor
Other advisors:
Analysis of genes controlling biomass traits in the genome of sugarcane (Saccharum spp. hybrids)
(2017) Doctor Philosophy — Associate Advisor
Other advisors: