Our lab aims to test fundamental hypotheses in genetics and evolutionary biology. Principally, we are interested the relationship between genotypic and phenotypic change during adaptive evolution. This line of inquiry requires an understanding of both the type of selection acting on traits as they evolve and ultimately the functional polymorphisms available for selection to act upon. We presently use both native and exotic species of Drosophila in our work but also undertake collaborative study in other organisms that represent examples of recurring ecological and evolutionary phenomena. We are equipped to use a broad range of techniques in our investigations including experimental evolution, field-based selection studies, quantitative genetics, molecular population genetics, genomics and advanced quantitative methods in statistics and computational biology. The broad range of techniques available to our group provides students with a unique opportunity to broaden their skill sets as they address fundamental questions.
Journal Article: Environmental dependence of mutational (co)variances of adaptive traits
Kannan, Ashvitha, Dugand, Robert J, Appleton, Nicholas C, Chenoweth, Stephen F, Sgrò, Carla M and McGuigan, Katrina (2023). Environmental dependence of mutational (co)variances of adaptive traits. Evolution. doi: 10.1093/evolut/qpad154
Journal Article: Dengue and chikungunya virus loads in the mosquito Aedes aegypti are determined by distinct genetic architectures
Novelo, Mario, Dutra, Heverton LC, Metz, Hillery C., Jones, Matthew J., Sigle, Leah T., Frentiu, Francesca D., Allen, Scott L., Chenoweth, Stephen F. and McGraw, Elizabeth A. (2023). Dengue and chikungunya virus loads in the mosquito Aedes aegypti are determined by distinct genetic architectures. PLOS Pathogens, 19 (4) e1011307, e1011307. doi: 10.1371/journal.ppat.1011307
Journal Article: Maintenance of quantitative genetic variance in complex, multitrait phenotypes: the contribution of rare, large effect variants in 2 Drosophila species
Hine, Emma, Runcie, Daniel E., Allen, Scott L., Wang, Yiguan, Chenoweth, Stephen F., Blows, Mark W. and McGuigan, Katrina (2022). Maintenance of quantitative genetic variance in complex, multitrait phenotypes: the contribution of rare, large effect variants in 2 Drosophila species. Genetics, 222 (2) iyac122, 1-17. doi: 10.1093/genetics/iyac122
Dissecting natural variation in sexually dimorphic gene expression
(2019–2023) ARC Discovery Projects
(2019–2023) The Pennsylvania State University
Detecting sex differences in natural selection
(2018–2021) ARC Discovery Projects
Evolutionary potential of Macronutrient Preferences of Drosophila serrata
(2023) Doctor Philosophy
The relationships between dietary macronutrients and ageing
Doctor Philosophy
(2021) Doctor Philosophy
Analyzing and comparing the geometry of individual fitness surfaces
Chenoweth, Stephen F., Hunt, John and Rundle, Howard D. (2012). Analyzing and comparing the geometry of individual fitness surfaces. The adaptive landscape in evolutionary biology. (pp. 126-149) edited by Erik Svensson and Ryan Calsbeek. Oxford, United Kingdom: Oxford University Press.
Environmental dependence of mutational (co)variances of adaptive traits
Kannan, Ashvitha, Dugand, Robert J, Appleton, Nicholas C, Chenoweth, Stephen F, Sgrò, Carla M and McGuigan, Katrina (2023). Environmental dependence of mutational (co)variances of adaptive traits. Evolution. doi: 10.1093/evolut/qpad154
Novelo, Mario, Dutra, Heverton LC, Metz, Hillery C., Jones, Matthew J., Sigle, Leah T., Frentiu, Francesca D., Allen, Scott L., Chenoweth, Stephen F. and McGraw, Elizabeth A. (2023). Dengue and chikungunya virus loads in the mosquito Aedes aegypti are determined by distinct genetic architectures. PLOS Pathogens, 19 (4) e1011307, e1011307. doi: 10.1371/journal.ppat.1011307
Hine, Emma, Runcie, Daniel E., Allen, Scott L., Wang, Yiguan, Chenoweth, Stephen F., Blows, Mark W. and McGuigan, Katrina (2022). Maintenance of quantitative genetic variance in complex, multitrait phenotypes: the contribution of rare, large effect variants in 2 Drosophila species. Genetics, 222 (2) iyac122, 1-17. doi: 10.1093/genetics/iyac122
Rusuwa, Bosco B., Chung, Henry, Allen, Scott L., Frentiu, Francesca D. and Chenoweth, Stephen F. (2022). Natural variation at a single gene generates sexual antagonism across fitness components in Drosophila. Current Biology, 32 (14), 3161-3169.e7. doi: 10.1016/j.cub.2022.05.038
Genetic and social contributions to sex differences in lifespan in Drosophila serrata
Narayan, Vikram P., Wilson, Alastair J. and Chenoweth, Stephen F. (2022). Genetic and social contributions to sex differences in lifespan in Drosophila serrata. Journal of Evolutionary Biology, 35 (4), 657-663. doi: 10.1111/jeb.13992
Reddiex, Adam J. and Chenoweth, Stephen F. (2021). Integrating genomics and multivariate evolutionary quantitative genetics: a case study of constraints on sexual selection in Drosophila serrata. Proceedings of the Royal Society B: Biological Sciences, 288 (1960) 20211785, 20211785-197. doi: 10.1098/rspb.2021.1785
The impact of artificial selection for Wolbachia-mediated dengue virus blocking on phage WO
Dutra, Heverton L. C., Ford, Suzanne A., Allen, Scott L., Bordenstein, Sarah R., Chenoweth, Stephen F., Bordenstein, Seth R. and McGraw, Elizabeth A. (2021). The impact of artificial selection for Wolbachia-mediated dengue virus blocking on phage WO. PLoS Neglected Tropical Diseases, 15 (7) e0009637, e0009637. doi: 10.1371/journal.pntd.0009637
Ford, Suzanne A., Albert, Istvan, Allen, Scott L., Chenoweth, Stephen F., Jones, Matthew, Koh, Cassandra, Sebastian, Aswathy, Sigle, Leah T. and McGraw, Elizabeth A. (2020). Artificial selection finds new hypotheses for the mechanism of Wolbachia-mediated dengue blocking in mosquitoes. Frontiers in Microbiology, 11 1456, 1456. doi: 10.3389/fmicb.2020.01456
Selection on Aedes aegypti alters Wolbachia-mediated dengue virus blocking and fitness
Ford, Suzanne A., Allen, Scott L., Ohm, Johanna R., Sigle, Leah T., Sebastian, Aswathy, Albert, Istvan, Chenoweth, Stephen F. and McGraw, Elizabeth A. (2019). Selection on Aedes aegypti alters Wolbachia-mediated dengue virus blocking and fitness. Nature Microbiology, 4 (11), 1832-1839. doi: 10.1038/s41564-019-0533-3
The origin and maintenance of metabolic allometry in animals
White, Craig R., Marshall, Dustin J., Alton, Lesley A., Arnold, Pieter A., Beaman, Julian E., Bywater, Candice L., Condon, Catriona, Crispin, Taryn S., Janetzki, Aidan, Pirtle, Elia, Winwood-Smith, Hugh S., Angilletta, Michael J., Chenoweth, Stephen F., Franklin, Craig E., Halsey, Lewis G., Kearney, Michael R., Portugal, Steven J. and Ortiz-Barrientos, Daniel (2019). The origin and maintenance of metabolic allometry in animals. Nature Ecology and Evolution, 3 (4), 598-603. doi: 10.1038/s41559-019-0839-9
Dominance reversals and the maintenance of genetic variation for fitness
Connallon, Tim and Chenoweth, Stephen F. (2019). Dominance reversals and the maintenance of genetic variation for fitness. Plos Biology, 17 (1) e3000118, e3000118. doi: 10.1371/journal.pbio.3000118
Koh, Cassandra, Allen, Scott L., Herbert, Rosemarie I., McGraw, Elizabeth A. and Chenoweth, Stephen F. (2018). The transcriptional response of Aedes aegypti with variable extrinsic incubation periods for dengue virus. Genome Biology and Evolution, 10 (12), 3141-3151. doi: 10.1093/gbe/evy230
Genetic constraints on microevolutionary divergence of sex-biased gene expression
Allen, Scott L., Bonduriansky, Russell and Chenoweth, Stephen F. (2018). Genetic constraints on microevolutionary divergence of sex-biased gene expression. Philosophical Transactions of the Royal Society B: Biological Sciences, 373 (1757) 20170427, 20170427. doi: 10.1098/rstb.2017.0427
The genomics of sexual conflict
Rowe, Locke, Chenoweth, Stephen F. and Agrawal, Aneil F. (2018). The genomics of sexual conflict. American Naturalist, 192 (2), 274-286. doi: 10.1086/698198
Artificial selection reveals sex differences in the genetic basis of sexual attractiveness
Gosden, Thomas P., Reddiex, Adam J. and Chenoweth, Stephen F. (2018). Artificial selection reveals sex differences in the genetic basis of sexual attractiveness. Proceedings of the National Academy of Sciences, 115 (21), 5498-5503. doi: 10.1073/pnas.1720368115
Collet, Julie M., McGuigan, Katrina, Allen, Scott L., Chenoweth, Stephen F. and Blows, Mark W. (2018). Mutational pleiotropy and the strength of stabilizing selection within and between functional modules of gene expression. Genetics, 208 (4), 1601-1616. doi: 10.1534/genetics.118.300776
A genomic reference panel for Drosophila serrata
Reddiex, Adam J., Allen, Scott L. and Chenoweth, Stephen F. (2018). A genomic reference panel for Drosophila serrata. G3: Genes, Genomes, Genetics, 8 (4), 1335-1346. doi: 10.1534/g3.117.300487
Family level variation in Wolbachia-mediated dengue virus blocking in Aedes aegypti
Terradas, Gerard, Allen, Scott L., Chenoweth, Stephen F. and McGraw, Elizabeth A. (2017). Family level variation in Wolbachia-mediated dengue virus blocking in Aedes aegypti. Parasites and Vectors, 10 (1) 622, 1-12. doi: 10.1186/s13071-017-2589-3
Allowing nature to be nurture: a comment on Bailey et al
Chenoweth, Stephen F. and Hunt, John (2017). Allowing nature to be nurture: a comment on Bailey et al. Behavioral Ecology, 29 (1), 16-17. doi: 10.1093/beheco/arx169
Allen, Scott L., McGuigan, Katrina, Connallon, Tim, Blows, Mark W. and Chenoweth, Stephen F. (2017). Sexual selection on spontaneous mutations strengthens the between-sex genetic correlation for fitness. Evolution, 71 (10), 2398-2409. doi: 10.1111/evo.13310
Single-molecule sequencing of the Drosophila serrata genome
Allen, Scott L., Delaney, Emily K., Kopp, Artyom and Chenoweth, Stephen F. (2017). Single-molecule sequencing of the Drosophila serrata genome. G3 , 7 (3), 781-788. doi: 10.1534/g3.116.037598
Sex-biased transcriptome divergence along a latitudinal gradient
Allen, Scott L. , Bonduriansky, Russell, Sgro, Carla M. and Chenoweth, Stephen F. (2017). Sex-biased transcriptome divergence along a latitudinal gradient. Molecular Ecology, 26 (5), 1256-1272. doi: 10.1111/mec.14015
Evolutionary potential of the extrinsic incubation period of dengue virus in Aedes aegypti
Ye, Yixin H., Chenoweth, Stephen F., Carrasco, Alison M., Allen, Scott L., Frentiu, Francesca D., van den Hurk, Andrew F., Beebe, Nigel W. and McGraw, Elizabeth A. (2016). Evolutionary potential of the extrinsic incubation period of dengue virus in Aedes aegypti. Evolution, 70 (11), 2459-2469. doi: 10.1111/evo.13039
The pdm3 locus is a hotspot for recurrent evolution of female-limited color dimorphism in Drosophila
Yassin, Amir, Delaney, Emily K., Reddiex, Adam J., Seher, Thaddeus D., Bastide, Heloise, Appleton, Nicholas C., Lack, Justin B., David, Jean R., Chenoweth, Stephen F., Pool, John E. and Kopp, Artyom (2016). The pdm3 locus is a hotspot for recurrent evolution of female-limited color dimorphism in Drosophila. Current Biology, 26 (18), 2412-2422. doi: 10.1016/j.cub.2016.07.016
Testing for a genetic response to sexual selection in a wild Drosophila population
Gosden, T. P., Thomson, J. R., Blows, M. W., Schaul, A. and Chenoweth, S. F. (2016). Testing for a genetic response to sexual selection in a wild Drosophila population. Journal of Evolutionary Biology, 29 (6), 1278-1283. doi: 10.1111/jeb.12851
Ivory-Church, J., Frentiu, F. D. and Chenoweth, S. F. (2015). Polymorphisms in a desaturase 2 ortholog associate with cuticular hydrocarbon and male mating success variation in a natural population of Drosophila serrata. Journal of Evolutionary Biology, 28 (9), 1600-1609. doi: 10.1111/jeb.12679
Genomic evidence that sexual selection impedes adaptation to a novel environment
Chenoweth, Stephen F., Appleton, Nicholas C., Allen, Scott L. and Rundle, Howard D. (2015). Genomic evidence that sexual selection impedes adaptation to a novel environment. Current Biology, 25 (14), 1860-1866. doi: 10.1016/j.cub.2015.05.034
The phenome-wide distribution of genetic variance
Blows, Mark W., Allen, Scott L., Collet, Julie M., Chenoweth, Stephen F. and McGuigan, Katrina (2015). The phenome-wide distribution of genetic variance. American Naturalist, 186 (1), 15-30. doi: 10.1086/681645
Wolbachia reduces the transmission potential of dengue-infected Aedes aegypti
Ye, Yixin H., Carrasco, Alison M., Frentiu, Francesca D., Chenoweth, Stephen F., Beebe, Nigel W., van den Hurk, Andrew F., Simmons, Cameron P., O'Neill, Scott L. and McGraw, Elizabeth A. (2015). Wolbachia reduces the transmission potential of dengue-infected Aedes aegypti. PLoS Neglected Tropical Diseases, 9 (6) e0003894, 1-19. doi: 10.1371/journal.pntd.0003894
Variation and selection on preference functions: a comment on Edward
Chenoweth, Stephen F. and Gosden, Thomas P. (2015). Variation and selection on preference functions: a comment on Edward. Behavioral Ecology, 26 (2), 322-323. doi: 10.1093/beheco/aru233
Connecting thermal performance curve variation to the genotype: a multivariate QTL approach
Latimer, C. A. L., Foley, B. R. and Chenoweth, S. F. (2015). Connecting thermal performance curve variation to the genotype: a multivariate QTL approach. Journal of Evolutionary Biology, 28 (1), 155-168. doi: 10.1111/jeb.12552
Gosden, T. P., Rundle, H. D. and Chenoweth, S. F. (2014). Testing the correlated response hypothesis for the evolution and maintenance of male mating preferences in Drosophila serrata. Journal of Evolutionary Biology, 27 (10), 2106-2112. doi: 10.1111/jeb.12461
Pleiotropic mutations are subject to strong stabilizing selection
McGuigan, Katrina, Collet, Julie M., Allen, Scott L., Chenoweth, Stephen F. and Blows, Mark W. (2014). Pleiotropic mutations are subject to strong stabilizing selection. Genetics, 197 (3), 1051-1062. doi: 10.1534/genetics.114.165720
The nature and extent of mutational pleiotropy in gene expression of male Drosophila serrata
McGuigan, Katrina, Collet, Julie M., McGraw, Elizabeth A., Ye, Yixin H., Allen, Scott L., Chenoweth, Stephen F. and Blows, Mark W. (2014). The nature and extent of mutational pleiotropy in gene expression of male Drosophila serrata. Genetics, 196 (3), 911-921. doi: 10.1534/genetics.114.161232
Cassidy, Elizabeth J., Bath, Eleanor, Chenoweth, Stephen F. and Bonduriansky, Russell (2014). Sex-specific patterns of morphological diversification: evolution of reaction norms and static allometries in neriid flies. Evolution, 68 (2), 368-383. doi: 10.1111/evo.12276
Latimer, Camille A. L., McGuigan, Katrina, Wilson, Robbie S., Blows, Mark W. and Chenoweth, Stephen F. (2014). The contribution of spontaneous mutations to thermal sensitivity curve variation in drosophila serrata. Evolution, 68 (6), 1824-1837. doi: 10.1111/evo.12392
The evolutionary stability of cross-sex, cross-trait genetic covariances
Gosden, Thomas P. and Chenoweth, Stephen F. (2014). The evolutionary stability of cross-sex, cross-trait genetic covariances. Evolution, 68 (6), 1687-1697. doi: 10.1111/evo.12398
Allen, Scott L., Bonduriansky, Russell and Chenoweth, Stephen F. (2013). The genomic distribution of sex-biased genes in Drosophila serrata: X chromosome demasculinization, feminization, and hyperexpression in both sexes. Genome Biology and Evolution, 5 (10), 1986-1994. doi: 10.1093/gbe/evt145
Sex-specific fitness consequences of nutrient intake and the evolvability of diet preferences
Reddiex, Adam J., Gosden, Thomas P., Bonduriansky, Russell and Chenoweth, Stephen F. (2013). Sex-specific fitness consequences of nutrient intake and the evolvability of diet preferences. American Naturalist, 182 (1), 91-102. doi: 10.1086/670649
Innocenti, Paolo and Chenoweth, Stephen F. (2013). Interspecific divergence of transcription networks along lines of genetic variance in Drosophila: dimensionality, evolvability, and constraint. Molecular Biology and Evolution, 30 (6), 1358-1367. doi: 10.1093/molbev/mst047
Hallsson, L. R., Chenoweth, S. F. and Bonduriansky, R. (2012). The relative importance of genetic and nongenetic inheritance in relation to trait plasticity in Callosobruchus maculatus. Journal of Evolutionary Biology, 25 (12), 2422-2431. doi: 10.1111/jeb.12014
Gosden, Thomas P., Shastri, Krishna-Lila, Innocenti, Paolo and Chenoweth, Stephen F. (2012). The B-matrix harbors significant and sex-specific constraints on the evolution of multicharacter sexual dimorphism. Evolution, 66 (7), 2106-2116. doi: 10.1111/j.1558-5646.2012.01579.x
Stocker, Ann J., Rusuwa, Bosco B., Blacket, Mark J., Frentiu, Francesca D., Sullivan, Mitchell, Foley, Bradley R., Beatson, Scott, Hoffman, Ary A. and Chenoweth, Stephen F. (2012). Physical and linkage maps for Drosophila serrata, a model species for studies of clinal adaptation and sexual selection. G3: Genes, Genomes, Genetics, 2 (2), 287-297. doi: 10.1534/g3.111.001354
McGraw, Elizabeth A., Ye, Yixin H., Foley, Brad, Chenoweth, Stephen F., Higgie, Megan, Hine, Emma and Blows, Mark W. (2011). High-dimensional variance partitioning reveals the modular genetic basis of adaptive divergence in gene expressionduring reproductive character displacement. Evolution, 65 (11), 3126-3137. doi: 10.1111/j.1558-5646.2011.01371.x
Latimer, C. A. L., Wilson, R. S. and Chenoweth, S. F. (2011). Quantitative genetic variation for thermal performance curves within and among natural populations of Drosophila serrata. Journal of Evolutionary Biology, 24 (5), 965-975. doi: 10.1111/j.1420-9101.2011.02227.x
On the evolution of heightened condition dependence of male sexual displays
Gosden, T. P. and Chenoweth, S. F. (2011). On the evolution of heightened condition dependence of male sexual displays. Journal of Evolutionary Biology, 24 (3), 685-692. doi: 10.1111/j.1420-9101.2010.02205.x
Rundle, Howard D. and Chenoweth, Stephen F. (2011). Stronger convex (stabilizing) selection on homologous sexual display traits in females than in males: A multipopulation comparison in Drosophila serrata. Evolution, 65 (3), 893-899. doi: 10.1111/j.1558-5646.2010.01158.x
The genetic basis of sexually selected variation
Chenoweth, Stephen F. and McGuigan, Katrina (2010). The genetic basis of sexually selected variation. Annual Review of Ecology Evolution and Systematics, 41, 81-101. doi: 10.1146/annurev-ecolsys-102209-144657
Condon, Catriona H., Chenoweth, Stephen F. and Wilson, Robbie S. (2010). Zebrafish take their cue from temperature but not photoperiod for the seasonal plasticity of thermal performance. Journal of Experimental Biology, 213 (21), 3705-3709. doi: 10.1242/jeb.046979
Clines in cuticular hydrocarbons in two drosophila species with independent population histories
Frentiu, Francesca. D and Chenoweth, Stephen. F (2010). Clines in cuticular hydrocarbons in two drosophila species with independent population histories. Evolution, 64 (6), 1784-1794. doi: 10.1111/j.1558-5646.2009.00936.x
Chenoweth, Stephen F., Rundle, Howard D. and Blows, Mark W. (2010). Experimental evidence for the evolution of indirect genetic effects: Changes in the interaction effect coefficient, psi (ψ), due to sexual selection. Evolution, 64 (6), 1849-1856. doi: 10.1111/j.1558-5646.2010.00952.x
The contribution of selection and genetic constraints to phenotypic divergence
Chenoweth, Stephen F., Rundle, Howard D. and Blows, Mark W. (2010). The contribution of selection and genetic constraints to phenotypic divergence. American Naturalist, 175 (2), 186-196. doi: 10.1086/649594
The diversification of mate preferences by natural and sexual selection
Rundle, H.D., Chenoweth, S.F. and Blows, M.W. (2009). The diversification of mate preferences by natural and sexual selection. Journal of Evolutionary Biology, 22 (8), 1608-1615. doi: 10.1111/j.1420-9101.2009.01773.x
Characterizing the evolution of genetic variance using genetic covariance tensors
Hine, E, Chenoweth, SF, Rundle, HD and Blows, MW (2009). Characterizing the evolution of genetic variance using genetic covariance tensors. Philosphical Transactions of the Royal Society B-Biological Sciences, 364 (1523), 1567-1578. doi: 10.1098/rstb.2008.0313
Bonduriansky, Russell and Chenoweth, Stephen F. (2009). Intralocous sexual conflict. Trends In Ecology and Evolution, 24 (5), 280-288. doi: 10.1016/j.tree.2008.12.005
Ye, Yixin H., Chenoweth, Stephen F. and McGraw, Elizabeth A. (2009). Effective but costly, evolved mechanisms of defense against a virulent opportunistic pathogen in Drosophila melanogaster. PLoS Pathogens, 5 (4), e1000385.1-e1000385.9. doi: 10.1371/journal.ppat.1000385
Chenoweth, SF and Visscher, PM (2009). Association Mapping in Outbred Populations: Power and Efficiency When Genotyping Parents and Phenotyping Progeny. Genetics, 181 (2), 755-765. doi: 10.1534/genetics.108.099218
Frentiu, Francesca D., Adamski, Marcin, McGraw, Elizabeth A., Blows, Mark W. and Chenoweth, Stephen F. (2009). An expressed sequence tag (EST) library for Drosophila serrata, a model system for sexual selection and climatic adaptation studies. BMC Genomics, 10 (40) 40, 1-10. doi: 10.1186/1471-2164-10-40
Chenoweth, Stephen F. and Blows, Mark W. (2008). Qst meets the G matrix: The dimensionality of adaptive divergence in multiple correlated quantitative traits. Evolution, 62 (6), 1437-1449. doi: 10.1111/j.1558-5646.2008.00374.x
Rundle, H. D., Chenoweth, S. F. and Blows, M. W. (2008). Comparing Complex Fitness Surfaces: Among-Population Variation in Mutual Sexual Selection in Drosophila serrata. American Naturalist, 171 (4), 443-454. doi: 10.1086/528963
Polyandry and Paternity Skew in Natural and Experimental Populations of Drosophila serrata
Frentiu, F. and Chenoweth, S. F. (2008). Polyandry and Paternity Skew in Natural and Experimental Populations of Drosophila serrata. Molecular Ecology, 17 (6), 1589-1596. doi: 10.1111/j.1365-294X.2008.03693.x
Chenoweth, S. F., Rundle, H. D. and Blows, M. W. (2008). Genetic Constraints and the Evolution of Display Trait Sexual Dimorphism by Natural and Sexual Selection.. American Naturalist, 171 (1), 22-34. doi: 10.1086/523946
Male choice generates stabilizing sexual selection on a female fecundity correlate
Chenoweth, S. F., Petfield, D., Doughty, P. and Blows, M. W. (2007). Male choice generates stabilizing sexual selection on a female fecundity correlate. Journal of Evolutionary Biology, 20 (5), 1745-1750. doi: 10.1111/j.1420-9101.2007.01390.x
Foley, B., Chenoweth, S. F., Nuzhdin, S. V. and Blows, M. W. (2007). Natural genetic variation in cuticular hydrocarbon expression in male and female Drosophila melanogaster. Genetics, 175 (3), 1465-1477. doi: 10.1534/genetics.106.065771
Predicting the age of mosquitoes using transcriptional profiles
Cook, P. E., Hugo, L. E., Iturbe-Ormaetxe, I., Williams, C. R., Chenoweth, S. F., Ritchie, S. A., Ryan, P. A., Kay, B. H., Blows, M. W. and O'Neill, S. L. (2007). Predicting the age of mosquitoes using transcriptional profiles. Nature Protocols, 2 (11), 2796-2806. doi: 10.1038/nprot.2007.396
The use of transcriptional profiles to predict adult mosquito age under field conditions
Cook, P. E., Hugo, L. E., Iturbe-Ormaetxe, I., Williams, C. R., Chenoweth, S. F., Ritchie, S. A., Ryan, P. A., Kay, B. H., Blows, M. W. and O'Neill, S. L. (2006). The use of transcriptional profiles to predict adult mosquito age under field conditions. Proceedings of the National Academy of Sciences of the United States of America, 103 (48), 18060-18065. doi: 10.1073/pnas.0604875103
Can non-directional male mating preferences facilitate honest female ornamentation?
Chenoweth, S. F., Doughty, P. and Kokko, H. (2006). Can non-directional male mating preferences facilitate honest female ornamentation?. Ecology Letters, 9 (2), 179-184. doi: 10.1111/j.1461-0248.2005.00861.x
Dissecting the complex genetic basis of mate choice
Chenoweth, S. F. and Blows, M. W. (2006). Dissecting the complex genetic basis of mate choice. Nature Reviews Genetics, 7 (9), 681-692. doi: 10.1038/nrg1924
The roles of natural and sexual selection during adaptation to a novel environment
Rundle, H. D., Chenoweth, S. F. and Blows, M. W. (2006). The roles of natural and sexual selection during adaptation to a novel environment. Evolution, 60 (11), 2218-2225. doi: 10.1554/06-249.1
Divergent selection and the evolution of signal traits and mating preferences
Rundle, Howard D., Chenoweth, Stephen F., Doughty, Paul and Blows, Mark W. (2005). Divergent selection and the evolution of signal traits and mating preferences. Plos Biology, 3 (11) e368, 1988-1995. doi: 10.1371/journal.pbio.0030368
Petfield, Donna, Chenoweth, Stephen F., Rundle, Howard D. and Blows, Mark W. (2005). Genetic variance in female condition predicts indirect genetic variance in male sexual display traits. Proceedings of The National Academy of Sciences of the United States of America, 102 (17), 6045-6050. doi: 10.1073/pnas.0409378102
Contrasting mutual sexual selection on homologous signal traits in Drosophila serrata
Chenoweth, S. F. and Blows, M. W. (2005). Contrasting mutual sexual selection on homologous signal traits in Drosophila serrata. American Naturalist, 165 (2), 281-289. doi: 10.1086/427271
Phenotypic divergence along lines of genetic variance
McGuigan, K., Chenoweth, S. F. and Blows, M. W. (2005). Phenotypic divergence along lines of genetic variance. American Naturalist, 165 (1), 32-43. doi: 10.1086/426600
Hine, E. J., Chenoweth, S. F. and Blows, M. W. (2004). Multivariate quantitative genetics and the Lek Paradox: genetic variance in male sexually selected traits of Drosophila serrata under field control. Evolution, 58 (12), 2754-2762. doi: 10.1554/04-558
Blows, Mark W., Chenoweth, Stephen F. and Hine, Emma (2004). Orientation of the genetic variance-covariance matrix and the fitness surface for multiple male sexually selected traits. American Naturalist, 163 (3), 329-340. doi: 10.1086/381941
Chenoweth, S. F. and Hughes, J. M. (2003). Oceanic interchange and nonequilibrium population structure in the estuarine dependent Indo-Pacific tasselfish, Polynemus sheridani. Molecular Ecology, 12 (9), 2387-2397. doi: 10.1046/j.1365-294X.2003.01921.x
Signal trait sexual dimorphism and mutual sexual selection in Drosophila serrata
Chenoweth, Stephen F. and Blows, Mark W. (2003). Signal trait sexual dimorphism and mutual sexual selection in Drosophila serrata. Evolution, 57 (10), 2326-2334. doi: 10.1554/02-754
Chenoweth, S. F. and Hughes, J. M. (2003). Speciation and phylogeography in Caridina indistincta, a complex of freshwater shrimps from Australian heathland streams. Marine And Freshwater Research, 54 (7), 807-812. doi: 10.1071/MF02168
Chenoweth, S. F., Hughes, J. M. and Connolly, R. C. (2002). Phylogeography of the pipefish, Urocampus carinirostris, suggests secondary intergradation of ancient lineages. Marine Biology, 141 (3), 541-547. doi: 10.1007/s00227-002-0836-3
Johnson, J. W., Randall, J. E. and Chenoweth, S. F. (2001). Diagramma Melanacrum new species of haemulid fish from Indonesia, Borneo and the Philippines with a generic review. Memoirs of the Queensland Museum, 46 (2), 657-676.
Natural Selection And The Reinforcement Of Mate Recognition
Higgie, M., Chenoweth, S. and Blows, M. W. (2000). Natural Selection And The Reinforcement Of Mate Recognition. Science, 290 (5491), 519-521. doi: 10.1126/science.290.5491.519
Strong genetic structuring in a habitat specialist, the Oxleyan Pygmy Perch Nannoperca oxleyana
Hughes, Jane, Ponniah, Mark, Hurwood, David, Chenoweth, Stephen and Arthington, Angela (1999). Strong genetic structuring in a habitat specialist, the Oxleyan Pygmy Perch Nannoperca oxleyana. Heredity, 83 (1), 5-14. doi: 10.1038/sj.hdy.6885390
Chenoweth, Stephen F., Hughes, Jane M., Keenan, Clive P. and Lavery, Shane (1998). Concordance between dispersal and mitochondrial gene flow: isolation by distance in a tropical teleost, Lates calcarifer (Australian barramundi). Heredity, 80 (2), 187-197. doi: 10.1038/sj.hdy.6882920
When oceans meet: a teleost shows secondary intergradation at an Indian-Pacific interface
Chenoweth, S. F., Hughes, J. M., Keenan, C. P. and Lavery, S. (1998). When oceans meet: a teleost shows secondary intergradation at an Indian-Pacific interface. Proceedings of The Royal Society of London Series B, 265 (1394), 415-420. doi: 10.1098/rspb.1998.0310
Genetic population structure of the catadromous perciform: Macquaria novemaculeata (Percichthyidae)
Chenoweth, SF and Hughes, JM (1997). Genetic population structure of the catadromous perciform: Macquaria novemaculeata (Percichthyidae). Journal of Fish Biology, 50 (4), 721-733. doi: 10.1006/jfbi.1996.0336
Ford, Suzanne, Allen, Scott, Sebastian, Aswathy, Albert, Istvan, Chenoweth, Stephen and McGraw, Elizabeth (2019). Using evolutionary approaches to dissect the genetic basis of Wolbachia-mediated blocking of dengue virus in Aedes aegypti. 68th Annual Meeting of the American Society for Tropical Medicine and Hygiene (ASTMH), National Harbor, MD, United States, 20 - 24 November 2019. Deerfield, IL, United States: American Society of Tropical Medicine and Hygiene. doi: 10.4269/ajtmh.abstract2019
Differential transcriptomic responses associated with Denv Eip in Aedes aegypti
Koh, Cassandra, Allen, Scott L., Herbert, Rosemarie I., McGraw, Elizabeth A. and Chenoweth, Stephen F. (2017). Differential transcriptomic responses associated with Denv Eip in Aedes aegypti. 66th Annual Meeting of the American-Society-of-Tropical-Medicine-and-Hygiene (ASTMH), Baltimore, MD, United States, 5-9 November 2017. Deerfield, IL, United States: American Society of Tropical Medicine and Hygiene.
Genetic architecture of Wolbachia-mediated dengue virus blocking in Aedes aegypti
Terradas, Gerard, Allen, Scott L., Chenoweth, Stephen F. and McGraw, Elizabeth A. (2017). Genetic architecture of Wolbachia-mediated dengue virus blocking in Aedes aegypti. 66th Annual Meeting of the American Society of Tropical Medicine and Hygiene (ASTMH), Baltimore, MD United States, 5 - 9 November 2017. Deerfield, IL United States: American Society of Tropical Medicine and Hygiene.
The evolution of acclimation of thermal performance
Condon, C. H., Chenoweth, S. F. and Wilson, R. S. (2011). The evolution of acclimation of thermal performance. Annual Meeting of the Society-for-Integrative-and-Comparative-Biology, Salt Lake City Ut, Jan 03-07, 2011. CARY: OXFORD UNIV PRESS INC.
Genetic variation in the plasticity of thermal performance in the zebrafish, Danio rerio
Condon, C. H., Chenoweth, S. F. and Wilson, R. S. (2010). Genetic variation in the plasticity of thermal performance in the zebrafish, Danio rerio. Annual Meeting of the Society-for-Integrative-and-Comparative-Biology, Seattle Wa, Jan 03-07, 2010. CARY: OXFORD UNIV PRESS INC.
Mixed signals: thermal performance of zebrafish Danio rerio in uncertain environments
Condon, C. H., Chenoweth, S. F. and Wilson, R. S. (2009). Mixed signals: thermal performance of zebrafish Danio rerio in uncertain environments. Annual Meeting of the Society-for-Integrative-and-Comparative-Biology, Boston Ma, Jan 03-07, 2009. CARY: OXFORD UNIV PRESS INC.
Hine, Emma, Runcie, Daniel E. , Allen, Scott L. , Wang, Yiguan , Chenoweth, Stephen F. , Blows, Mark W. and McGuigan, Katrina (2021). R code and input files required to generate figures and tables for BSFG analysis of standing variance in two Drosophila datasets. This dataset is the current version and supercedes any earlier versions.. The University of Queensland. (Dataset) doi: 10.48610/a3c5652
Enrichment analysis results for heritable common factors of Drosophila gene expression
Hine, Emma, Runcie, Daniel E., Allen, Scott L., Wang, Yiguan, Chenoweth, Stephen F., Blows, Mark W. and McGuigan, Katrina (2021). Enrichment analysis results for heritable common factors of Drosophila gene expression. The University of Queensland. (Dataset) doi: 10.48610/90441fc
R code used to implement Bayesian sparse factor genetic analysis of Drosophila gene expression.
Hine, Emma, Runcie, Daniel E., Allen, Scott L., Wang, Yiguan, Chenoweth, Stephen F., Blows, Mark W. and McGuigan, Katrina (2021). R code used to implement Bayesian sparse factor genetic analysis of Drosophila gene expression.. The University of Queensland. (Dataset) doi: 10.48610/ec9b92c
Hine, Emma , Runcie, Daniel E., Allen, Scott L., Wang, Yiguan, Chenoweth, Stephen F. , Blows, Mark W. and McGuigan, Katrina (2021). Two Drosophila datasets used in the Bayesian sparse factor analysis of standing genetic variance in 3385 gene expression traits. The University of Queensland. (Dataset) doi: 10.48610/f3eede4
Dissecting natural variation in sexually dimorphic gene expression
(2019–2023) ARC Discovery Projects
(2019–2023) The Pennsylvania State University
Detecting sex differences in natural selection
(2018–2021) ARC Discovery Projects
(2018–2019) The Pennsylvania State University
Resolving genomic sexual conflicts via sexually dimorphic gene expression
(2015–2019) ARC Discovery Projects
(2012–2016) Monash University
(2012–2015) ARC Discovery Projects
High Throughput Genotyping using Paralleled and Miniaturized DNA amplification.
(2012) UQ Major Equipment and Infrastructure
A genomic approach to understanding the maintenance of genetic variation under sexual selection
(2011–2016) ARC Discovery Projects
ResTeach 2011 0.2 FTE School of Biological Sciences
(2011–2013)
Adaptive evolution of mutual mate preferences in nature
(2009–2010) ARC Linkage International
Building Capacity in Quantitative Genomics
(2009) UQ School/Centre Co-Funding
The Genetic Basis of Differences Between the Sexes
(2007–2012) ARC Discovery Projects
A Genomic Dissection of Natural Adaptation in Mate Recognition
(2006–2011) ARC Discovery Projects
Understanding intra-genomic conflicts between the sexes: a quantitative genomic approach
(2006–2007) UQ Foundation Research Excellence Awards - DVC(R) Funding
The Evolution of Sexual Dimorphism In Sexually-Selected Traits: An Experimental Test
(2004–2006) UQ Early Career Researcher
Natural Selection on Mate Recognition in Field Populations of Drosophila serrata
(2003–2005) ARC Discovery Projects
The genetic benefits of male mate choice in Drosophila serrata
(2003–2004) UQ New Staff Research Start-Up Fund
The relationships between dietary macronutrients and ageing
Doctor Philosophy — Principal Advisor
Other advisors:
The contribution of new mutations to genetic variation of quantitative traits
Doctor Philosophy — Associate Advisor
Other advisors:
Context dependence of new mutations: the role of ancestral alleles and sex.
Doctor Philosophy — Associate Advisor
Other advisors:
Evolutionary potential of Macronutrient Preferences of Drosophila serrata
(2023) Doctor Philosophy — Principal Advisor
(2021) Doctor Philosophy — Principal Advisor
Other advisors:
The impacts of mutation and selection on sex-biased gene expression in Drosophila serrata
(2021) Master Philosophy — Principal Advisor
Other advisors:
Genomics of sexually selected traits in Drosophila serrata
(2019) Doctor Philosophy — Principal Advisor
Other advisors:
The evolution of sex-biased gene expression in Drosophila serrata
(2018) Doctor Philosophy — Principal Advisor
Other advisors:
(2015) Doctor Philosophy — Principal Advisor
Other advisors:
(2013) Doctor Philosophy — Principal Advisor
Other advisors:
(2016) Doctor Philosophy — Associate Advisor
Other advisors:
(2016) Doctor Philosophy — Associate Advisor
Other advisors:
Developing genomic resources for an emerging ecological model species Senecio lautus
(2015) Doctor Philosophy — Associate Advisor
Other advisors:
The genomic basis of parallel ecological speciation
(2015) Doctor Philosophy — Associate Advisor
Other advisors:
(2012) Doctor Philosophy — Associate Advisor
Other advisors:
(2011) Doctor Philosophy — Associate Advisor
Other advisors:
Exploring host response to bacterial infection
(2010) Doctor Philosophy — Associate Advisor
(2008) Doctor Philosophy — Associate Advisor
Other advisors:
Reinforcement and Sexual Selection: Interaction and Effect on Mate Recognition
(2008) Doctor Philosophy — Associate Advisor
Other advisors: