The University of Queensland

Advanced designs for barley breeding experiments

Kelly, Alison and Forknall, Clayton (2020). Advanced designs for barley breeding experiments. Achieving sustainable cultivation of barley. (pp. 159-181) edited by Glen Fox and Chengdao Li. Cambridge, United Kingdom: Burleigh Dodds Science Publishing. doi: 10.19103/as.2019.0060.06

Pattern analysis in grassland and animal production systems

Kelly, A. M. and Basford, K. E. (2000). Pattern analysis in grassland and animal production systems. Field and Laboratory Methods for Grassland and Animal Production Research. (pp. 9-28) edited by L. 't Mannetje and R. M. Jones. Wallingford: CABI Publishing.

Wheat photosystem II heat tolerance: evidence for genotype‐by‐environment interactions

Coast, Onoriode, Posch, Bradley C., Rognoni, Bethany G., Bramley, Helen, Gaju, Oorbessy, Mackenzie, John, Pickles, Claire, Kelly, Alison M., Lu, Meiqin, Ruan, Yong‐Ling, Trethowan, Richard and Atkin, Owen K. (2022). Wheat photosystem II heat tolerance: evidence for genotype‐by‐environment interactions. The Plant Journal, 111 (5), 1368-1382. doi: 10.1111/tpj.15894

Investigation of two QTL conferring seedling resistance to Fusarium crown rot in barley on reducing grain yield loss under field environments

Zheng, Zhi, Powell, Jonathan, Gao, Shang, Percy, Cassandra, Kelly, Alison, Macdonald, Bethany, Zhou, Meixue, Davies, Philip and Liu, Chunji (2022). Investigation of two QTL conferring seedling resistance to Fusarium crown rot in barley on reducing grain yield loss under field environments. Agronomy, 12 (6), 1282. doi: 10.3390/agronomy12061282

WGNAM: whole-genome nested association mapping

Paccapelo, M. Valeria, Kelly, Alison M., Christopher, Jack T. and Verbyla, Arūnas P. (2022). WGNAM: whole-genome nested association mapping. Theoretical and Applied Genetics, 135 (7), 2213-2232. doi: 10.1007/s00122-022-04107-x

QTL identified for stay-green in a multi-reference nested association mapping population of wheat exhibit context dependent expression and parent-specific alleles

Christopher, Mandy, Paccapelo, Valeria, Kelly, Alison, Macdonald, Bethany, Hickey, Lee, Richard, Cécile, Verbyla, Ari, Chenu, Karine, Borrell, Andrew, Amin, Asad and Christopher, Jack (2021). QTL identified for stay-green in a multi-reference nested association mapping population of wheat exhibit context dependent expression and parent-specific alleles. Field Crops Research, 270 108181, 108181. doi: 10.1016/j.fcr.2021.108181

An improved method for selection of wheat genotypes for tolerance to crown rot caused by Fusarium pseudograminearum

Kelly, Alison, Macdonald, Bethany, Percy, Cassandra and Davies, Philip (2021). An improved method for selection of wheat genotypes for tolerance to crown rot caused by Fusarium pseudograminearum. Journal of Phytopathology, 169 (6), 339-349. doi: 10.1111/jph.12970

Proteomics reveals commitment to germination in barley seeds is marked by loss of stress response proteins and mobilisation of nutrient reservoirs

Osama, Sarah K., Kerr, Edward D., Yousif, Adel M., Phung, Toan K., Kelly, Alison M., Fox, Glen P. and Schulz, Benjamin L. (2021). Proteomics reveals commitment to germination in barley seeds is marked by loss of stress response proteins and mobilisation of nutrient reservoirs. Journal of Proteomics, 242 104221, 104221. doi: 10.1016/j.jprot.2021.104221

A novel approach to the design and analysis of field experiments to study variation in the tolerance and resistance of cultivars to root lesion nematodes (Pratylenchus spp.)

Reeves, Karyn L., Forknall, Clayton R., Kelly, Alison M., Owen, Kirsty J., Fanning, Joshua, Hollaway, Grant J. and Loughman, Robert (2020). A novel approach to the design and analysis of field experiments to study variation in the tolerance and resistance of cultivars to root lesion nematodes (Pratylenchus spp.). Phytopathology, 110 (10), 1623-1631. doi: 10.1094/phyto-03-20-0077-r

Using yield response curves to measure variation in the tolerance and resistance of wheat cultivars to Fusarium crown rot

Forknall, Clayton R., Simpfendorfer, Steven and Kelly, Alison M. (2019). Using yield response curves to measure variation in the tolerance and resistance of wheat cultivars to Fusarium crown rot. Phytopathology, 109 (6), 932-941. doi: 10.1094/phyto-09-18-0354-r

Root architectural traits and yield: exploring the relationship in barley breeding trials

Robinson, Hannah, Kelly, Alison, Fox, Glen, Franckowiak, Jerome, Borrell, Andrew and Hickey, Lee (2018). Root architectural traits and yield: exploring the relationship in barley breeding trials. Euphytica, 214 (9) 151. doi: 10.1007/s10681-018-2219-y

A data-driven near infrared calibration process including near infrared spectral thumbprints

Nielsen, Sharon, Russell, Kenneth G., Kelly, Alison and Fox, Glen (2018). A data-driven near infrared calibration process including near infrared spectral thumbprints. Journal of Near Infrared Spectroscopy, 26 (3), 169-185. doi: 10.1177/0967033518782765

VERNALIZATION1 modulates root system architecture in wheat and barley

Voss-Fels, Kai P., Robinson, Hannah, Mudge, Stephen R., Richard, Cecile, Newman, Saul, Wittkop, Benjamin, Stahl, Andreas, Friedt, Wolfgang, Frisch, Matthias, Gabur, Iulian, Miller-Cooper, Anika, Campbell, Bradley C., Kelly, Alison, Fox, Glen, Christopher, Jack, Christopher, Mandy, Chenu, Karine, Franckowiak, Jerome, Mace, Emma S., Borrell, Andrew K., Eagles, Howard, Jordan, David R., Botella, Jose R., Hammer, Graeme, Godwin, Ian D., Trevaskis, Ben, Snowdon, Rod J. and Hickey, Lee T. (2017). VERNALIZATION1 modulates root system architecture in wheat and barley. Molecular Plant, 11 (1), 226-229. doi: 10.1016/j.molp.2017.10.005

Genomic regions influencing seminal root traits in barley

Robinson, Hannah, Hickey, Lee, Richard, Cecile, Mace, Emma, Kelly, Alison, Borrell, Andrew, Franckowiak, Jerome and Fox, Glen (2016). Genomic regions influencing seminal root traits in barley. The Plant Genome, 9 (1), 1-13. doi: 10.3835/plantgenome2015.03.0012

Non-cellulosic cell wall polysaccharides are subject to genotype times environment effects in sorghum (Sorghum bicolor) grain

Betts, Natalie S., Fox, Glen P., Kelly, Alison M., Cruickshank, Alan W., Lahnstein, Jelle, Henderson, Marilyn, Jordan, David R. and Burton, Rachel A. (2015). Non-cellulosic cell wall polysaccharides are subject to genotype times environment effects in sorghum (Sorghum bicolor) grain. Journal of Cereal Science, 63, 64-71. doi: 10.1016/j.jcs.2015.02.007

Cereal cultivars can be ranked consistently for resistance to root-lesion nematodes (Pratylenchus thornei & P. neglectus) using diverse procedures

Sheedy, J. G., McKay, A. C., Lewis, J., Vanstone, V. A., Fletcher, S., Kelly, A. and Thompson, J. P. (2015). Cereal cultivars can be ranked consistently for resistance to root-lesion nematodes (Pratylenchus thornei & P. neglectus) using diverse procedures. Australasian Plant Pathology, 44 (2), 175-182. doi: 10.1007/s13313-014-0333-4

Markers for seedling and adult plant crown rot resistance in four partially resistant bread wheat sources

Martin, A., Bovill, W. D., Percy, C. D., Herde, D., Fletcher, S., Kelly, A., Neate, S. M. and Sutherland, M. W. (2015). Markers for seedling and adult plant crown rot resistance in four partially resistant bread wheat sources. Theoretical and Applied Genetics, 128 (3), 377-385. doi: 10.1007/s00122-014-2437-1

Floristic composition and pasture condition of Aristida/Bothriochloa pastures in central Queensland. I. Pasture floristics

Silcock, R. G., Hall, T. J., Filet, P. G., Kelly, A. M., Osten, D., Schefe, C. M. and Knights, P. T. (2015). Floristic composition and pasture condition of Aristida/Bothriochloa pastures in central Queensland. I. Pasture floristics. Rangeland Journal, 37 (2), 199-215. doi: 10.1071/rj14106

Floristic composition and pasture condition of Aristida/Bothriochloa pastures in central Queensland. II. Soil and pasture condition interactions

Silcock, R. G., Hall, T. J., Filet, P. G., Kelly, A. M., Osten, D. and Graham, T. W. G. (2015). Floristic composition and pasture condition of Aristida/Bothriochloa pastures in central Queensland. II. Soil and pasture condition interactions. Rangeland Journal, 37 (2), 217-226. doi: 10.1071/rj14107

QTLs for water absorption and flour yield identified in a double haplod wheat population Lang/QT8766

Fox, G. P., Martin, A., Kelly, A. M., Sutherland, M. W., Martin, D., Banks, P. M. and Sheppard, J. (2013). QTLs for water absorption and flour yield identified in a double haplod wheat population Lang/QT8766. Euphytica, 192 (3), 453-462. doi: 10.1007/s10681-013-0885-3

Variation in water extraction with maize plant density and its impact on model application

Peake, Allan S., Huth, Neil I., Kelly, Alison M. and Bell, Kerry L. (2013). Variation in water extraction with maize plant density and its impact on model application. Field Crops Research, 146, 31-37. doi: 10.1016/j.fcr.2013.02.012

Correlation between NIRS generated and chemically measured feed quality data in barley (Hordeum vulgare), and potential use in QTL analysis identification

Gous, Peter W., Martin, Anke, Lawson, Wendy, Kelly, Alison, Fox, Glen P. and Sutherland, Mark W. (2012). Correlation between NIRS generated and chemically measured feed quality data in barley (Hordeum vulgare), and potential use in QTL analysis identification. Euphytica, 188 (3), 325-332. doi: 10.1007/s10681-012-0644-x

QTL associated with barley (Hordeum vulgare) feed quality traits measured through in situ digestion

Gous, Peter W., Martin, Anke, Lawson, Wendy, Kelly, Alison, Fox, Glen P. and Sutherland, Mark W. (2012). QTL associated with barley (Hordeum vulgare) feed quality traits measured through in situ digestion. Euphytica, 185 (1), 37-45. doi: 10.1007/s10681-011-0608-6

Diploid and tetraploid progenitors of wheat are valuable sources of resistance to the root lesion nematode Pratylenchus thornei

Sheedy, J. G., Thompson, J. P. and Kelly, A. (2012). Diploid and tetraploid progenitors of wheat are valuable sources of resistance to the root lesion nematode Pratylenchus thornei. Euphytica, 186 (2), 377-391. doi: 10.1007/s10681-011-0617-5

Development of a single kernel NIR barley protein calibration and assessment of variation in protein on grain quality

Fox, G. P., Kelly, A., Sweeney, N. and Hocorft, D. M. (2011). Development of a single kernel NIR barley protein calibration and assessment of variation in protein on grain quality. Journal of the Institute of Brewing, 117 (4), 582-586. doi: 10.1002/j.2050-0416.2011.tb00507.x

Hybridisation of Australian chickpea cultivars with wild Cicer spp. increases resistance to root-lesion nematodes (Pratylenchus thornei and P. neglectus)

Thompson, John P., Reen, Roslyn A., Clewett, Timothy G., Sheedy, Jason G., Kelly, Alison M., Gogel, Beverley J. and Knights, Edward J. (2011). Hybridisation of Australian chickpea cultivars with wild Cicer spp. increases resistance to root-lesion nematodes (Pratylenchus thornei and P. neglectus). Australasian Plant Pathology, 40 (6), 601-611. doi: 10.1007/s13313-011-0089-z

QTL analysis of feed quality traits in two barley F6-derived RIL populations

Lawson, W., Mace, E., Collard, B. C. Y., Fox, G., Kelly, A., Sutherland, M., Franckowiak, J. and Bowman, J. (2010). QTL analysis of feed quality traits in two barley F6-derived RIL populations. SABRAO Journal of Breeding and Genetics.

Genetic control of wheat quality: interactions between chromosomal regions determining protein content and composition, dough rheology, and sponge and dough baking properties

Mann, Gulay, Diffey, Simon, Cullis, Brian, Azanza, Fermin, Martin, David, Kelly, Alison, McIntyre, Lynne, Schmidt, Adele, Ma, Wujun, Nath, Zena, Kutty, Ibrahim, Leyne, P. Emmett, Rampling, Lynette, Quail, Ken J. and Morell, Matthew K. (2009). Genetic control of wheat quality: interactions between chromosomal regions determining protein content and composition, dough rheology, and sponge and dough baking properties. Theoretical and Applied Genetics, 118 (8), 1519-1537. doi: 10.1007/s00122-009-1000-y

Estimation in a multiplicative mixed model involving a genetic relationship matrix

Kelly, Alison M., Cullis, Brian R., Gilmour, Arthur R., Eccleston, John A. and Thompson, Robin (2009). Estimation in a multiplicative mixed model involving a genetic relationship matrix. Genetics Selection Evolution, 41 (33) 33, 1-9. doi: 10.1186/1297-9686-41-33

Is malting barley better feed for cattle than feed barley?

Fox, G., Kelly, A., Bowman, J., Inkerman, A., Poulsen, D. and Henry, R. (2009). Is malting barley better feed for cattle than feed barley?. Journal of the Institute of Brewing, 115 (2), 95-104. doi: 10.1002/j.2050-0416.2009.tb00352.x

Assessing for genetic and environmental effects on ruminant feed quality in barley (Hordeum vulgare)

Fox, Glen P., Bowman, Jan, Kelly, Alison, Inkerman, Andy, Poulsen, David and Henry, Robert (2008). Assessing for genetic and environmental effects on ruminant feed quality in barley (Hordeum vulgare). Euphytica, 163 (2), 249-257. doi: 10.1007/s10681-007-9638-5

Measurement of genetic and environmental variation in barley (Hordeum vulgare) grain hardness

Fox, Glen P., Osborne, Brian, Bowman, Jan, Kelly, Alison, Cakir, Mehmet, Poulsen, David, Inkerman, Andy and Henry, Robert (2007). Measurement of genetic and environmental variation in barley (Hordeum vulgare) grain hardness. Journal of Cereal Science, 46 (1), 82-92. doi: 10.1016/j.jcs.2006.12.003

Measurement of barley grain rheology for the quality selection of breeding material

Osborne, B. G., Fox, G. P., Kelly, A. M. and Henry, R. J. (2007). Measurement of barley grain rheology for the quality selection of breeding material. Journal of the Institute of Brewing, 113 (2), 135-141. doi: 10.1002/j.2050-0416.2007.tb00269.x

The accuracy of varietal selection using factor analytic models for multi-environment plant breeding trials

Kelly, A. M., Smith, A. B., Eccleston, J. A. and Cullis, B. R. (2007). The accuracy of varietal selection using factor analytic models for multi-environment plant breeding trials. Crop Science, 47 (3), 1063-1070. doi: 10.2135/cropsci2006.08.0540

Selecting for increased barley grain size

Fox, Glen P., Kelly, Alison, Poulsen, David, Inkerman, Andy and Henry, Robert (2006). Selecting for increased barley grain size. Journal of Cereal Science, 43 (2), 198-208. doi: 10.1016/j.jcs.2005.08.004

Genetic impacts of the hull on barley grain quality

Fox, G. P., Kelly, A. M., Cakir, M., Bloustein, G., Poulsen, D. M. E., Inkerman, P. A. and Henry, R. J. (2006). Genetic impacts of the hull on barley grain quality. Journal of the Institute of Brewing, 112 (2), 101-107. doi: 10.1002/j.2050-0416.2006.tb00238.x

Australian wheat for the sponge and dough bread making process

Lever, T., Kelly, A., De Faveri, J., Martin, D., Sheppard, J., Quail, K. and Miskelly, D. (2005). Australian wheat for the sponge and dough bread making process. Australian Journal of Agricultural Research, 56 (10), 1049-1057. doi: 10.1071/ar05113

Blanchability of peanut (Arachis hypogaea L.) kernels: early generation selection and genotype stability over three environments

Cruickshank, A.W., Tonks, J.W. and Kelly, A.K. (2003). Blanchability of peanut (Arachis hypogaea L.) kernels: early generation selection and genotype stability over three environments. Australian Journal of Agricultural Research, 54 (9), 885-888. doi: 10.1071/ar02126

Responses of adzuki bean as affected by row spacing, plant density and variety

Redden, R., Desborough, P., Tompkins, W., Usher, T. and Kelly, A. (2001). Responses of adzuki bean as affected by row spacing, plant density and variety. Australian Journal of Experimental Agriculture, 41 (2), 235-243. doi: 10.1071/ea00069

Identification of genomic regions associated with stay green in sorghum by testing RILs in multiple environments

Tao, Y.Z., Henzell, R.G., Jordan, D.R., Butler, D.G., Kelly, A.M. and McIntyre, C.L. (2000). Identification of genomic regions associated with stay green in sorghum by testing RILs in multiple environments. Theoretical and Applied Genetics, 100 (8), 1225-1232. doi: 10.1007/s001220051428

Crown rot and common root rot in wheat grown under different tillage and stubble treatments in southern Queensland, Australia

Wildermuth, G.B., Thomas, G.A., Radford, B.J., McNamara, R.B. and Kelly, A. (1997). Crown rot and common root rot in wheat grown under different tillage and stubble treatments in southern Queensland, Australia. Soil & Tillage Research, 44 (3-4), 211-224. doi: 10.1016/s0167-1987(97)00054-8

Evaluating odour attractants for control of wild dogs

Mitchell, J. and Kelly, A. (1992). Evaluating odour attractants for control of wild dogs. Wildlife Research, 19 (2), 211-219. doi: 10.1071/wr9920211

Growth and carcass characteristics of three-way Africander multiply Simmental multiply Hereford crossbreds in south-western Queensland

Cavaye, J.M. , Knight, J.L. , Tierney, T.J. and Kelly, A.M. (1992). Growth and carcass characteristics of three-way Africander multiply Simmental multiply Hereford crossbreds in south-western Queensland. Australian Journal of Experimental Agriculture, 32 (6), 675-681. doi: 10.1071/ea9920675

Efficiency and fractal behaviour of optimisation methods on multiple-optima surfaces

Mayer, D.G. , Schoorl, D. , Butler, D.G. and Kelly, A.M. (1991). Efficiency and fractal behaviour of optimisation methods on multiple-optima surfaces. Agricultural Systems, 36 (3), 315-328. doi: 10.1016/0308-521x(91)90013-z

Genomic prediction to accelerate breeding potential for increased transpiration efficiency in wheat

Fletcher, Andrew, Christopher, Jack, Kelly, Alison and Chenu, Karine (2022). Genomic prediction to accelerate breeding potential for increased transpiration efficiency in wheat. Australian Agronomy Conference, Toowoomba, QLD, Australia, 18-22 October 2022.

Maximising water-limited yield in cereals by balancing pre- and post-anthesis growth

Borrell, Andrew, Christopher, Jack, Kelly, Alison, Collins, Brian and Chenu, Karine (2022). Maximising water-limited yield in cereals by balancing pre- and post-anthesis growth. Australian Agronomy Conference, Toowoomba, QLD, Australia, 18-22 October 2022.

Using high-throughput phenotyping and genome wide association study (GWAS) techniques to identify molecular markers for transpiration efficiency in wheat

Fletcher, Andrew, Kelly, Alison, Christopher, Jack, Paccapela, Valeria and Chenu, Karine (2019). Using high-throughput phenotyping and genome wide association study (GWAS) techniques to identify molecular markers for transpiration efficiency in wheat. Australian Agronomy Conference, Wagga Wagga, NSW Australia, 25-29 August 2019. Wagga Wagga, NSW, Australia: Australian Society of Agronomy.

Integrating crop modelling, physiology, genetics and breeding to aid crop improvement for changing environments

Chenu, Karine, Fletcher, Andrew, Ababaei, Behnam, Christopher, Jack, Kelly, A., Hickey, Lee, Van Oosterom, Erik and Hammer, Graeme (2019). Integrating crop modelling, physiology, genetics and breeding to aid crop improvement for changing environments. International Tropical Agriculture Conference (TropAg2019), Brisbane, QLD Australia, 11-13 November 2019.

Integrating crop modelling, physiology, genetics and breeding to aid crop improvement for changing environments in the Australian wheatbelt

Chenu, Karine, Fletcher, Andrew, Ababaei, Behnam, Christopher, Jack, Kelly, Alison, Hickey, Lee, Van Oosterom, Erik and Hammer, Graeme (2019). Integrating crop modelling, physiology, genetics and breeding to aid crop improvement for changing environments in the Australian wheatbelt. International Tropical Agriculture Conference (TROPAG 2019), Brisbane, Australia, 11–13 November 2019. Basel, Switzerland: MDPI AG. doi: 10.3390/proceedings2019036004

Genetics of transpiration efficiency in a wheat Nested Association Mapping population

Fletcher, A., Christopher, J., Kelly, A., Paccapelo, V. and Chenu, K. (2018). Genetics of transpiration efficiency in a wheat Nested Association Mapping population. 15th Plant Biology Europe, Copenhagen, Denmark, 18-21 June 2018.

Overview of the Australian macadamia industry breeding program

Topp, B., Hardner, C. M., Neal, J., Kelly, A., Russell, D., McConchie, C. and O'Hare, P. (2016). Overview of the Australian macadamia industry breeding program. XXIX International Horticultural Congress on Horticulture: Sustaining Lives, Livelihoods and Landscapes (IHC2014), Brisbane, Australia, 17 - 22 August 2014. Leuven, Belgium: International Society for Horticultural Science. doi: 10.17660/ActaHortic.2016.1127.8

Preliminary evaluation of macadamia rootstocks for yield and tree height

Neal, J. M., Kelly, A., Hardner, C. M., McConchie, C. and Topp, B. L. (2016). Preliminary evaluation of macadamia rootstocks for yield and tree height. 29th International Horticultural Congress on Horticulture - Sustaining Lives, Livelihoods and Landscapes (IHC) / International Symposium on Nut Crops, Brisbane Australia, Aug 17, 2014. Leuven, Belgium: International Society for Horticultural Science. doi: 10.17660/ActaHortic.2016.1109.30

Strategies for breeding macadamias in Australia

Topp, B. L., Hardner, C. M. and Kelly, A. M. (2012). Strategies for breeding macadamias in Australia. IHC2010: 28th International Horticultural Congress on Science and Horticulture for People, Lisboa, Portugal, 22-27 August, 2010. Leuven, Belgium: International Society for Horticultural Science. doi: 10.17660/ActaHortic.2012.935.6

Management of traits and genes involved in adaptation of barley to north-eastern Australia

Franckowiak, J., Platz, G., Lawson, W., Killian, A, Fox, G., Kelly, A., Mace, E. and Jordan, D. (2011). Management of traits and genes involved in adaptation of barley to north-eastern Australia. 16th Australian Barley Technical Symposium, Adelaide, Australia, 18-21 September 2011.

Reverse Spectroscopy: bypassing the need for NIR calibration in a barley breeding program

Kelly, A., Fox, G., Franckowiak, J., Sweeney, N. and Only-Watson, K. (2011). Reverse Spectroscopy: bypassing the need for NIR calibration in a barley breeding program. 15th International Conference on Near Infrared Spectroscopy, Cape Town, South Africa, 13-20 May 2011.

Sponge & dough quality testing using RVA

Taylor, T., Kelly, A., Newberry, M., Cavangh, C., Martin, D. and Fox, G. (2011). Sponge & dough quality testing using RVA. 61st Australian Cereal Chemistry Conference, Coolongatta, NSW, Australia, 4-8 September 2011.

Investigating the molecular genetics of malt and feed quality traits in barley

Lawson, W., Mace, E., Collard, B., Fox, G., Kelly, A., Sutherland, M. and Franckowiak, J. (2010). Investigating the molecular genetics of malt and feed quality traits in barley. 6th Canadian Barley Technical Symposium, Saskatoon, Saskatchewan, Canada, 25-28 July 2010. Saskatoon, Saskatchewan, Canada: University of Saskatchewan.

Estimation of a linear mixed model with a reduced rank variance matrix

Kelly, Alison Maree (2013). Estimation of a linear mixed model with a reduced rank variance matrix. PhD Thesis, School of Mathematics and Physics, The University of Queensland.