Dr Loic Yengo Dimbou

Senior Research Officer

Institute for Molecular Bioscience
l.yengo@imb.uq.edu.au
+61 7 334 62095

Overview

Loic Yengo is a statistical geneticist and team leader within the Program of Complex Traits Genomics (PCTG). Loic joined the University of Queensland in 2016 with a research background in applied mathematics, statistics, and molecular epidemiology. His current research focuses on understanding the genetic and phenotypic consequences of non-random mating (inbreeding and assortative mating) in human populations, and on developing analytical methods for genome-wide association studies (GWAS).

Research Impacts

Loic's research contributes to the discovery of genes and biological pathways involved in the etiology of multifactorial diseases such as obesity or type 2 diabetes. A better understanding of genes underlying inter-individual variation in disease susceptibility has the potential to illuminate new and personalised therapies.

Qualifications

  • PhD in Applied Mathematics, Lille I

Publications

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Grants

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Supervision

  • Doctor Philosophy

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Available Projects

  • Short Project description. This projects aims at utilising genetic and phenotypic data from ~500,000 participants of the UK Biobank to investigate phenotypic and genetic patterns induced by non-random mating in humans. Two forms of non-random mating will be investigated: assortative mating (resemblance between spouses) and inbreeding (mating between relatives). Findings from this project have implications in the analysis and interpretation of genome-wide association studies. The project will involve advanced modelling and statistical analyses of large volumes of data (genotyped and imputed SNP data, whole-exome sequencing, gene-expression, brain-imaging derived-traits).

    Candidate. Candidates with a background in quantitative/population genetics, statistics, mathematics and other quantitative fields will be considered. Programming skills (R, python, C/C++) and prior experience in analysing genetic data (e.g. GWAS) is desirable. (Note: if required, lectures on fundamental concepts of quantitative and population genetics can be taken as part of the PhD training).

    The Team. The successful candidate will be doing their research within the Program in Complex Traits Genomics (PCTG) Lab co-led by Professors Jian Yang, Naomi Wray and Peter Visscher, who are internationally recognized leaders in the field of complex traits genetics and have been recently listed among the world’s top one per cent most cited researchers of their field. PCTG provides a stimulating and highly interdisciplinary environment for PhD candidates to form and develop their research.

    PhD advisor. Dr Loic Yengo is a senior research officer of the Institute of Molecular Bioscience at the University of Queensland, Australia; and the Statistical Genetics Team leader within PCTG. He did his PhD in applied mathematics and is an expert in statistical modelling and analysis of genetic data. His research interests intersect quantitative genetics, genetic epidemiology and sociogenomics.

    Expected start. First semester of 2020.

    Contact. If you’re interested, please send your CV and cover letter and two references to Dr Loic Yengo: l.yengo@imb.uq.edu.au

    URLs

    IMB: https://imb.uq.edu.au/

    The team PCTG: http://cnsgenomics.com/

    PhD advisor: https://scholar.google.fr/citations?user=iv8dxlIAAAAJ&hl=en

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Publications

Journal Article

  • Yengo, Loic, Sidari, Morgan, Verweij, Karin J. H., Visscher, Peter M., Keller, Matthew C. and Zietsch, Brendan P. (2019) No evidence for social genetic effects or genetic similarity among friends beyond that due to population stratification: A reappraisal of Domingue et al (2018). Behavior Genetics, . doi:10.1007/s10519-019-09979-2

  • Lloyd-Jones, Luke R., Zeng, Jian, Sidorenko, Julia, Yengo, Loïc, Moser, Gerhard, Kemper, Kathryn E., Wang, Huanwei, Zheng, Zhili, Magi, Reedik, Esko, Tõnu, Metspalu, Andres, Wray, Naomi R., Goddard, Michael E., Yang, Jian and Visscher, Peter M. (2019) Improved polygenic prediction by Bayesian multiple regression on summary statistics. Nature Communications, 10 1: 5086. doi:10.1038/s41467-019-12653-0

  • Abdellaoui, Abdel, Hugh-Jones, David, Yengo, Loic, Kemper, Kathryn E., Nivard, Michel G., Veul, Laura, Holtz, Yan, Zietsch, Brendan P., Frayling, Timothy M., Wray, Naomi R., Yang, Jian, Verweij, Karin J. H. and Visscher, Peter M. (2019) Genetic correlates of social stratification in Great Britain. Nature Human Behaviour, . doi:10.1038/s41562-019-0757-5

  • Yengo, Loic, Wray, Naomi R. and Visscher, Peter M. (2019) Extreme inbreeding in a European ancestry sample from the contemporary UK population. Nature Communications, 10 1: 3719. doi:10.1038/s41467-019-11724-6

  • Wray, Naomi R. and Yengo, Loic (2019) Assortative mating in autism spectrum disorder: toward an evidence base from DNA data, but not there yet. Biological Psychiatry, 86 4: 250-252. doi:10.1016/j.biopsych.2019.06.007

  • Liu, Ching-Ti, Merino, Jordi, Rybin, Denis, DiCorpo, Daniel, Benke, Kelly S., Bragg-Gresham, Jennifer L., Canouil, Mickaël, Corre, Tanguy, Grallert, Harald, Isaacs, Aaron, Kutalik, Zoltan, Lahti, Jari, Marullo, Letizia, Marzi, Carola, Rasmussen-Torvik, Laura J., Rocheleau, Ghislain, Rueedi, Rico, Scapoli, Chiara, Verweij, Niek, Vogelzangs, Nicole, Willems, Sara M., Yengo, Loïc, Bakker, Stephan J. L., Beilby, John, Hui, Jennie, Kajantie, Eero, Müller-Nurasyid, Martina, Rathmann, Wolfgang, Balkau, Beverley, Bergmann, Sven, Eriksson, Johan G., Florez, Jose C., Froguel, Philippe, Harris, Tamara, Hung, Joseph, James, Alan L., Kavousi, Maryam, Miljkovic, Iva, Musk, Arthur W., Palmer, Lyle J., Peters, Annette, Roussel, Ronan, van der harst, Pim, van Duijn, Cornelia M., Vollenweider, Peter, Barroso, Inês, Prokopenko, Inga, Dupuis, Josée, Meigs, James B. and Bouatia-Naji, Nabila (2019) Genome-wide association study of change in fasting glucose over time in 13,807 non-diabetic European ancestry individuals. Scientific Reports, 9 1: . doi:10.1038/s41598-019-45823-7

  • Wu, Yeda, Byrne, Enda M., Zheng, Zhili, Kemper, Kathryn E., Yengo, Loic, Mallett, Andrew J., Yang, Jian, Visscher, Peter M. and Wray, Naomi R. (2019) Genome-wide association study of medication-use and associated disease in the UK Biobank. Nature Communications, 10 1: . doi:10.1038/s41467-019-09572-5

  • Pulit, Sara L., Stoneman, Charli, Morris, Andrew P., Wood, Andrew R., Glastonbury, Craig A., Tyrrell, Jessica, Yengo, Loïc, Ferreira, Teresa, Marouli, Eirini, Ji, Yingjie, Yang, Jian, Jones, Samuel, Beaumont, Robin, Croteau-Chonka, Damien C., Winkler, Thomas W., Consortium, Giant, Hattersley, Andrew T., Loos, Ruth J F, Hirschhorn, Joel N., Visscher, Peter M., Frayling, Timothy M., Yaghootkar, Hanieh and Lindgren, Cecilia M. (2019) Meta-analysis of genome-wide association studies for body fat distribution in 694 649 individuals of European ancestry. Human Molecular Genetics, 28 1: 166-174. doi:10.1093/hmg/ddy327

  • Yengo, Loic and Visscher, Peter M. (2018) Assortative mating on complex traits revisited: Double first cousins and the X-chromosome. Theoretical Population Biology, 124 51-60. doi:10.1016/j.tpb.2018.09.002

  • Yengo, Loic, Robinson, Matthew R., Keller, Matthew C., Kemper, Kathryn E., Yang, Yuanhao, Trzaskowski, Maciej, Gratten, Jacob, Turley, Patrick, Cesarini, David, Benjamin, Daniel J., Wray, Naomi R., Goddard, Michael E., Yang, Jian and Visscher, Peter M. (2018) Imprint of assortative mating on the human genome. Nature Human Behaviour, 2 12: 948-954. doi:10.1038/s41562-018-0476-3

  • Ligthart, Symen, Vaez, Ahmad, Võsa, Urmo, Stathopoulou, Maria G., de Vries, Paul S., Prins, Bram P., Van der Most, Peter J., Tanaka, Toshiko, Naderi, Elnaz, Rose, Lynda M., Wu, Ying, Karlsson, Robert, Barbalic, Maja, Lin, Honghuang, Pool, René, Zhu, Gu, Macé, Aurélien, Sidore, Carlo, Trompet, Stella, Mangino, Massimo, Sabater-Lleal, Maria, Kemp, John P., Abbasi, Ali, Kacprowski, Tim, Verweij, Niek, Smith, Albert V., Huang, Tao, Marzi, Carola, Feitosa, Mary F., Lohman, Kurt K., Kleber, Marcus E., Milaneschi, Yuri, Mueller, Christian, Huq, Mahmudul, Vlachopoulou, Efthymia, Lyytikäinen, Leo-Pekka, Oldmeadow, Christopher, Deelen, Joris, Perola, Markus, Zhao, Jing Hua, Feenstra, Bjarke, Alizadeh, Behrooz Z., Boezen, H. Marike, Franke, Lude, van der Harst, Pim, Navis, Gerjan, Rots, Marianne, Snieder, Harold, Swertz, Morris, Wolffenbuttel, Bruce H.R., Wijmenga, Cisca, Amini, Marzyeh, Benjamin, Emelia, Chasman, Daniel I., Dehghan, Abbas, Ahluwalia, Tarunveer Singh, Meigs, James, Tracy, Russell, Alizadeh, Behrooz Z., Ligthart, Symen, Bis, Josh, Eiriksdottir, Gudny, Pankratz, Nathan, Gross, Myron, Rainer, Alex, Snieder, Harold, Wilson, James G., Psaty, Bruce M., Dupuis, Josee, Prins, Bram, Vaso, Urmo, Stathopoulou, Maria, Franke, Lude, Lehtimaki, Terho, Koenig, Wolfgang, Jamshidi, Yalda, Siest, Sophie, Abbasi, Ali, Uitterlinden, Andre G., Abdollahi, Mohammadreza, Schnabel, Renate, Schick, Ursula M., Nolte, Ilja M., Kraja, Aldi, Hsu, Yi-Hsiang, Tylee, Daniel S., Zwicker, Alyson, Uher, Rudolf, Davey-Smith, George, Morrison, Alanna C., Hicks, Andrew, van Duijn, Cornelia M., Ward-Caviness, Cavin, Boerwinkle, Eric, Rotter, J., Rice, Ken, Lange, Leslie, Perola, Markus, de Geus, Eco, Morris, Andrew P., Makela, Kari Matti, Stacey, David, Eriksson, Johan, Frayling, Tim M., Slagboom, Eline P., Lahti, Jari, Schraut, Katharina E., Fornage, Myriam, Suktitipat, Bhoom, Chen, Wei-Min, Li, Xiaohui, Nutile, Teresa, Malerba, Giovanni, Luan, Jian'an, Bak, Tom, Schork, Nicholas, Del Greco M., Fabiola, Thiering, Elisabeth, Mahajan, Anubha, Marioni, Riccardo E., Mihailov, Evelin, Eriksson, Joel, Ozel, Ayse Bilge, Zhang, Weihua, Nethander, Maria, Cheng, Yu-Ching, Aslibekyan, Stella, Ang, Wei, Gandin, Ilaria, Yengo, Loïc, Portas, Laura, Kooperberg, Charles, Hofer, Edith, Rajan, Kumar B., Schurmann, Claudia, den Hollander, Wouter, Ahluwalia, Tarunveer S., Zhao, Jing, Draisma, Harmen H.M., Ford, Ian, Timpson, Nicholas, Teumer, Alexander, Huang, Hongyan, Wahl, Simone, Liu, YongMei, Huang, Jie, Uh, Hae-Won, Geller, Frank, Joshi, Peter K., Yanek, Lisa R., Trabetti, Elisabetta, Lehne, Benjamin, Vozzi, Diego, Verbanck, Marie, Biino, Ginevra, Saba, Yasaman, Meulenbelt, Ingrid, O'Connell, Jeff R., Laakso, Markku, Giulianini, Franco, Magnusson, Patrik K.E., Ballantyne, Christie M., Hottenga, Jouke Jan, Montgomery, Grant W., Rivadineira, Fernando, Rueedi, Rico, Steri, Maristella, Herzig, Karl-Heinz, Stott, David J., Menni, Cristina, Frånberg, Mattias, St. Pourcain, Beate, Felix, Stephan B., Pers, Tune H., Bakker, Stephan J.L., Kraft, Peter, Peters, Annette, Vaidya, Dhananjay, Delgado, Graciela, Smit, Johannes H., Großmann, Vera, Sinisalo, Juha, Seppälä, Ilkka, Williams, Stephen R., Holliday, Elizabeth G., Moed, Matthijs, Langenberg, Claudia, Räikkönen, Katri, Ding, Jingzhong, Campbell, Harry, Sale, Michele M., Chen, Yii-Der I., James, Alan L., Ruggiero, Daniela, Soranzo, Nicole, Hartman, Catharina A., Smith, Erin N., Berenson, Gerald S., Fuchsberger, Christian, Hernandez, Dena, Tiesler, Carla M.T., Giedraitis, Vilmantas, Liewald, David, Fischer, Krista, Mellström, Dan, Larsson, Anders, Wang, Yunmei, Scott, William R., Lorentzon, Matthias, Beilby, John, Ryan, Kathleen A., Pennell, Craig E., Vuckovic, Dragana, Balkau, Beverly, Concas, Maria Pina, Schmidt, Reinhold, Mendes de Leon, Carlos F., Bottinger, Erwin P., Kloppenburg, Margreet, Paternoster, Lavinia, Boehnke, Michael, Musk, A. W., Willemsen, Gonneke, Evans, David M., Madden, Pamela A.F., Kähönen, Mika, Kutalik, Zoltán, Zoledziewska, Magdalena, Karhunen, Ville, Kritchevsky, Stephen B., Sattar, Naveed, Lachance, Genevieve, Clarke, Robert, Harris, Tamara B., Raitakari, Olli T., Attia, John R., van Heemst, Diana, Kajantie, Eero, Sorice, Rossella, Gambaro, Giovanni, Scott, Robert A., Hicks, Andrew A., Ferrucci, Luigi, Standl, Marie, Lindgren, Cecilia M., Starr, John M., Karlsson, Magnus, Lind, Lars, Li, Jun Z., Chambers, John C., Mori, Trevor A., de Geus, Eco J.C.N., Heath, Andrew C., Martin, Nicholas G., Auvinen, Juha, Buckley, Brendan M., de Craen, Anton J.M., Waldenberger, Melanie, Strauch, Konstantin, Meitinger, Thomas, Scott, Rodney J., McEvoy, Mark, Beekman, Marian, Bombieri, Cristina, Ridker, Paul M., Mohlke, Karen L., Pedersen, Nancy L., Morrison, Alanna C., Boomsma, Dorret I., Whitfield, John B., Strachan, David P., Hofman, Albert, Vollenweider, Peter, Cucca, Francesco, Jarvelin, Marjo-Riitta, Jukema, J. Wouter, Spector, Tim D., Hamsten, Anders, Zeller, Tanja, Uitterlinden, André G., Nauck, Matthias, Gudnason, Vilmundur, Qi, Lu, Grallert, Harald, Borecki, Ingrid B., Rotter, Jerome I., März, Winfried, Wild, Philipp S., Lokki, Marja-Liisa, Boyle, Michael, Salomaa, Veikko, Melbye, Mads, Eriksson, Johan G., Wilson, James F., Penninx, Brenda W.J.H., Becker, Diane M., Worrall, Bradford B., Gibson, Greg, Krauss, Ronald M., Ciullo, Marina, Zaza, Gianluigi, Wareham, Nicholas J., Oldehinkel, Albertine J., Palmer, Lyle J., Murray, Sarah S., Pramstaller, Peter P., Bandinelli, Stefania, Heinrich, Joachim, Ingelsson, Erik, Deary, Ian J., Mägi, Reedik, Vandenput, Liesbeth, van der Harst, Pim, Desch, Karl C., Kooner, Jaspal S., Ohlsson, Claes, Hayward, Caroline, Lehtimäki, Terho, Shuldiner, Alan R., Arnett, Donna K., Beilin, Lawrence J., Robino, Antonietta, Froguel, Philippe, Pirastu, Mario, Jess, Tine, Koenig, Wolfgang, Loos, Ruth J.F., Evans, Denis A., Schmidt, Helena, Smith, George Davey, Slagboom, P. Eline, Eiriksdottir, Gudny, Morris, Andrew P., Psaty, Bruce M., Tracy, Russell P., Nolte, Ilja M., Boerwinkle, Eric, Visvikis-Siest, Sophie, Reiner, Alex P., Gross, Myron, Bis, Joshua C., Franke, Lude, Franco, Oscar H., Benjamin, Emelia J., Chasman, Daniel I., Dupuis, Josée, Snieder, Harold, Dehghan, Abbas and Alizadeh, Behrooz Z. (2018) Genome analyses of >200,000 individuals identify 58 loci for chronic inflammation and highlight pathways that link inflammation and complex disorders. American Journal of Human Genetics, 103 5: 691-706. doi:10.1016/j.ajhg.2018.09.009

  • Yengo, Loic, Sidorenko, Julia, Kemper, Kathryn E., Zheng, Zhili, Wood, Andrew R., Weedon, Michael N., Frayling, Timothy M., Hirschhorn, Joel, Yang, Jian and Visscher, Peter M. (2018) Meta-analysis of genome-wide association studies for height and body mass index in ∼700000 individuals of European ancestry. Human Molecular Genetics, 27 20: 3641-3649. doi:10.1093/hmg/ddy271

  • Imatoh, Takuya, Yengo, Loic, Rocheleau, Ghislain, Kamimura, Seiichiro, Maeda, Shiro, Miyazaki, Motonobu and Froguel, Philippe (2018) ALDH2 Polymorphism rs671, but Not ADH1B Polymorphism rs1229984, Increases Risk for Hypo-HDL-Cholesterolemia in a/a Carriers Compared to the G/G Carriers. Lipids, 53 8: 797-807. doi:10.1002/lipd.12087

  • Xue, Angli, Wu, Yang, Zhu, Zhihong, Zhang, Futao, Kemper, Kathryn E., Zheng, Zhili, Yengo, Loic, Lloyd-Jones, Luke R., Sidorenko, Julia, Wu, Yeda, eQTLGen Consortium, McRae, Allan F., Visscher, Peter M., Zeng, Jian and Yang, Jian (2018) Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes. Nature Communications, 9 1: 2941. doi:10.1038/s41467-018-04951-w

  • Lee, James J., Wedow, Robbee, Okbay, Aysu, Kong, Edward, Maghzian, Omeed, Zacher, Meghan, Nguyen-Viet, Tuan Anh, Bowers, Peter, Sidorenko, Julia, Karlsson Linnér, Richard, Fontana, Mark Alan, Kundu, Tushar, Lee, Chanwook, Li, Hui, Li, Ruoxi, Royer, Rebecca, Timshel, Pascal N., Walters, Raymond K., Willoughby, Emily A., Yengo, Loïc, 23andMe Research Team, COGENT (Cognitive Genomics Consortium), Social Science Genetic Association Consortium, Alver, Maris, Bao, Yanchun, Clark, David W., Day, Felix R., Furlotte, Nicholas A., Joshi, Peter K., Kemper, Kathryn E., Kleinman, Aaron, Langenberg, Claudia, Mägi, Reedik, Trampush, Joey W., Verma, Shefali Setia, Wu, Yang, Lam, Max, Zhao, Jing Hua, Zheng, Zhili, Boardman, Jason D, Campbell, Harry, Freese, Jeremy, Harris, Kathleen Mullan, Hayward, Caroline, Herd, Pamela, Kumari, Meena, Lencz, Todd, Luan, Jian'an, Malhotra, Anil K., Metspalu, Andres, Milani, Lili, Ong, Ken K., Perry, John R. B., Porteous, David J., Ritchie, Marylyn D., Smart, Melissa C., Smith, Blair H., Tung, Joyce Y., Wareham, Nicholas J., Wilson, James F., Beauchamp, Jonathan P., Conley, Dalton C., Esko, Tõnu, Lehrer, Steven F., Magnusson, Patrik K. E., Oskarsson, Sven, Pers, Tune H., Robinson, Matthew R., Thom, Kevin, Watson, Chelsea, Chabris, Christopher F., Meyer, Michelle N., Laibson, David I., Yang, Jian, Johannesson, Magnus, Koellinger, Philipp D., Turley, Patrick, Visscher, Peter M., Benjamin, Daniel J. and Cesarini, David (2018) Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals. Nature Genetics, 50 8: 1112-1121. doi:10.1038/s41588-018-0147-3

  • Abderrahmani, Amar, Yengo, Loïc, Caiazzo, Robert, Canouil, Mickaël, Cauchi, Stéphane, Raverdy, Violeta, Plaisance, Valérie, Pawlowski, Valérie, Lobbens, Stéphane, Maillet, Julie, Rolland, Laure, Boutry, Raphael, Queniat, Gurvan, Kwapich, Maxime, Tenenbaum, Mathie, Bricambert, Julien, Saussenthaler, Sophie, Anthony, Elodie, Jha, Pooja, Derop, Julien, Sand, Olivier, Rabearivelo, Iandry, Leloire, Audrey, Pigeyre, Marie, Daujat-Chavanieu, Martine, Gerbal-Chaloin, Sabine, Dayeh, Tasnim, Lassailly, Guillaume, Mathurin, Philippe, Staels, Bart, Auwerx, Johan, Schürmann, Annette, Postic, Catherine, Schafmayer, Clemens, Hampe, Jochen, Bonnefond, Amélie, Pattou, François and Froguel, Philippe (2018) Increased hepatic PDGF-AA signaling mediates liver insulin resistance in obesity-associated type 2 diabetes. Diabetes, 67 7: 1310-1321. doi:10.2337/db17-1539

  • Yap, Chloe X., Sirodenko, Julia, Marioni, Riccardo E., Yengo, Loic, Wray, Naomi R. and Visscher, Peter M. (2018) Misestimation of heritability and prediction accuracy of male-pattern baldness. Nature Communications, 9 1: 2537. doi:10.1038/s41467-018-04807-3

  • Qi, Ting, Wu, Yang, Zeng, Jian, Zhang, Futao, Xue, Angli, Jiang, Longda, Zhu, Zhihong, Kemper, Kathryn, Yengo, Loic, Zheng, Zhili, eQTLGen Consortium, Marioni, Riccardo E., Montgomery, Grant W., Deary, Ian J., Wray, Naomi R., Visscher, Peter M., McRae, Allan F. and Yang, Jian (2018) Identifying gene targets for brain-related traits using transcriptomic and methylomic data from blood. Nature Communications, 9 1: 2282. doi:10.1038/s41467-018-04558-1

  • Zeng, Jian, de Vlaming, Ronald, Wu, Yang, Robinson, Matthew R., Lloyd-Jones, Luke R., Yengo, Loic, Yap, Chloe X., Xue, Angli, Sidorenko, Julia, McRae, Allan F., Powell, Joseph E., Montgomery, Grant W., Metspalu, Andres, Esko, Tonu, Gibson, Greg, Wray, Naomi R., Visscher, Peter M. and Yang, Jian (2018) Signatures of negative selection in the genetic architecture of human complex traits. Nature Genetics, 50 5: 746-753. doi:10.1038/s41588-018-0101-4

  • Mahajan, Anubha, Wessel, Jennifer, Willems, Sara M., Zhao, Wei, Robertson, Neil R., Chu, Audrey Y., Gan, Wei, Kitajima, Hidetoshi, Taliun, Daniel, Rayner, N. William, Guo, Xiuqing, Lu, Yingchang, Li, Man, Jensen, Richard A., Hu, Yao, Huo, Shaofeng, Lohman, Kurt K., Zhang, Weihua, Cook, James P., Prins, Bram Peter, Flannick, Jason, Grarup, Niels, Trubetskoy, Vassily Vladimirovich, Kravic, Jasmina, Kim, Young Jin, Rybin, Denis V., Yaghootkar, Hanieh, Müller-Nurasyid, Martina, Meidtner, Karina, Li-Gao, Ruifang, Varga, Tibor V., Marten, Jonathan, Li, Jin, Smith, Albert Vernon, An, Ping, Ligthart, Symen, Gustafsson, Stefan, Malerba, Giovanni, Demirkan, Ayse, Tajes, Juan Fernandez, Steinthorsdottir, Valgerdur, Wuttke, Matthias, Lecoeur, Cécile, Preuss, Michael, Bielak, Lawrence F., Graff, Marielisa, Highland, Heather M., Justice, Anne E., Liu, Dajiang J., Marouli, Eirini, Peloso, Gina Marie, Warren, Helen R., Afaq, Saima, Afzal, Shoaib, Ahlqvist, Emma, Bang, Lia B., Bertoni, Alain G., Bombieri, Cristina, Bork-Jensen, Jette, Brandslund, Ivan, Brody, Jennifer A., Burtt, Noël P., Canouil, Mickaël, Chen, Yii-Der Ida, Cho, Yoon Shin, Christensen, Cramer, Eastwood, Sophie V., Eckardt, Kai-Uwe, Fischer, Krista, Gambaro, Giovanni, Giedraitis, Vilmantas, Grove, Megan L., De Haan, Hugoline G., Hackinger, Sophie, Hai, Yang, Han, Sohee, Tybjærg-Hansen, Anne, Hivert, Marie-France, Isomaa, Bo, Jäger, Susanne, Jørgensen, Marit E., Jørgensen, Torben, Käräjämäki, Annemari, Kim, Bong-Jo, Kim, Sung Soo, Koistinen, Heikki A., Kovacs, Peter, Kriebel, Jennifer, Kronenberg, Florian, Läll, Kristi, Lange, Leslie A., Lee, Jung-Jin, Lehne, Benjamin, Li, Huaixing, Lin, Keng-Hung, Linneberg, Allan, Liu, Ching-Ti, Liu, Jun, Loh, Marie, Mägi, Reedik, Mamakou, Vasiliki, McKean-Cowdin, Roberta, Nadkarni, Girish, Neville, Matt, Nielsen, Sune F., Ntalla, Ioanna, Peyser, Patricia A., Rathmann, Wolfgang, Rice, Kenneth, Rich, Stephen S., Rode, Line, Rolandsson, Olov, Schönherr, Sebastian, Selvin, Elizabeth, Small, Kerrin S., Stančáková, Alena, Surendran, Praveen, Taylor, Kent D., Teslovich, Tanya M., Thorand, Barbara, Thorleifsson, Gudmar, Tin, Adrienne, Tönjes, Anke, Varbo, Anette, Witte, Daniel R., Wood, Andrew R., Yajnik, Pranav, Yao, Jie, Yengo, Loïc, Young, Robin, Boeing, Heiner, Boerwinkle, Eric, Bottinger, Erwin P., Chowdhury, Rajiv, Collins, Francis S., Dedoussis, George, Dehghan, Abbas, Deloukas, Panos, Ferrario, Marco M., Ferrières, Jean, Florez, Jose C., Frossard, Philippe, Gudnason, Vilmundur, Harris, Tamara B., Heckbert, Susan R., Howson, Joanna M. M., Ingelsson, Martin, Kathiresan, Sekar, Kee, Frank, Kuusisto, Johanna, Langenberg, Claudia, Launer, Lenore J., Lindgren, Cecilia M., Männistö, Satu, Meitinger, Thomas, Mohlke, Karen L., Moitry, Marie, Morris, Andrew D., Murray, Alison D., De Mutsert, Renée, Orho-Melander, Marju, Owen, Katharine R., Perola, Markus, Peters, Annette, Province, Michael A., Rasheed, Asif, Ridker, Paul M., Rivadineira, Fernando, Rosendaal, Frits R., Rosengren, Anders H., Salomaa, Veikko, Sheu, Wayne H.-H., Sladek, Rob, Smith, Blair H., Strauch, Konstantin, Uitterlinden, André G., Varma, Rohit, Willer, Cristen J., Blüher, Matthias, Chambers, John Campbell, Danesh, John, Van Duijn, Cornelia, Dupuis, Josée, Franco, Oscar H., Franks, Paul W., Froguel, Philippe, Grallert, Harald, Groop, Leif, Han, Bok-Ghee, Hansen, Torben, Hattersley, Andrew T., Hayward, Caroline, Ingelsson, Erik, Kardia, Sharon L.R., Karpe, Fredrik, Kooner, Jaspal Singh, Köttgen, Anna, Kuulasmaa, Kari, Laakso, Markku, Lin, Xu, Lind, Lars, Liu, Yongmei, Loos, Ruth J. F., Marchini, Jonathan, Metspalu, Andres, Mook-Kanamori, Dennis, Nordestgaard, Børge G., Palmer, Colin N. A., Pankow, James S., Pedersen, Oluf, Psaty, Bruce M., Rauramaa, Rainer, Sattar, Naveed, Schulze, Matthias B., Soranzo, Nicole, Spector, Timothy D., Stefansson, Kari, Stumvoll, Michael, Thorsteinsdottir, Unnur, Tuomi, Tiinamaija, Tuomilehto, Jaakko, Wareham, Nicholas J., Wilson, James G., Zeggini, Eleftheria, Scott, Robert A., Barroso, Inês, Frayling, Timothy M., Goodarzi, Mark O., Meigs, James B., Boehnke, Michael, Saleheen, Danish, Morris, Andrew P., Rotter, Jerome I., McCarthy, Mark I., ExomeBP Consortium, MAGIC Consortium and GIANT Consortium (2018) Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes article. Nature Genetics, 50 4: 559-571. doi:10.1038/s41588-018-0084-1

  • Yengo, Loic, Zhu, Zhihong, Wray, Naomi R., Weir, Bruce S., Yang, Jian, Robinson, Matthew R. and Visscher, Peter M. (2018) Reply to Kardos et al.: estimation of inbreeding depression from SNP data. Proceedings of the National Academy of Sciences, 115 11: E2494-E2495. doi:10.1073/pnas.1718598115

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Sorice, R., Döring, A., Lattka, E., Strauch, K., Theis, F., Waldenberger, M., Wichmann, H. e., Davies, G., Gow, A. j., Bruinenberg, M., Stolk, R. p., Kooner, J. s., Zhang, W., Winkelmann, B. r., Boehm, B. o., Lucae, S., Penninx, B. w., Smit, J. h., Curhan, G., Mudgal, P., Plenge, R. m., Portas, L., Persico, I., Kirin, M., Wilson, J. f., Mateo Leach, I., van Gilst, W. h., Goel, A., Ongen, H., Hofman, A., Rivadeneira, F., Uitterlinden, A. g., Imboden, M., von Eckardstein, A., Cucca, Francesco, Nagaraja, R., Piras, M. g., Nauck, M., Schurmann, C., Budde, K., Ernst, F., Farrington, S. m., Theodoratou, E., Prokopenko, I., Stumvoll, M., Jula, A., Perola, M., Salomaa, V., Shin, S. y., Spector, T. d., Sala, C., Ridker, P. m., Kähönen, M., Viikari, J., Hengstenberg, C., Nelson, C. p., Meschia, J. f., Nalls, M. a., Sharma, P., Singleton, A. b., Kamatani, N., Zeller, T., Burnier, M., Attia, J., Laan, M., Klopp, N., Hillege, H. l., Kloiber, S., Choi, H., Pirastu, M., Tore, S., Probst-Hensch, N. m., Völzke, H., Gudnason, V., Parsa, A., Schmidt, R., Whitfield, J. b., Fornage, M., Gasparini, P., Siscovick, D. s., Polasek, O., Campbell, H., Rudan, I., Bouatia-Naji, N., Metspalu, A., Loos, R. j., van Duijn, C. m., Borecki, I. b., Ferrucci, L., Gambaro, G., Deary, I. j., Wolffenbuttel, B. h., Chambers, J. c., März, W., Pramstaller, P. p., Snieder, H., Gyllensten, U., Wright, A. f., Navis, G., Watkins, H., Witteman, J. c., Sanna, S., Schipf, S., Dunlop, M. g., Tönjes, A., Ripatti, S., Soranzo, N., Toniolo, D., Chasman, D. i., Raitakari, O., Kao, W. h., Ciullo, M., Fox, C. s., Caulfield, M., Bochud, M. and Gieger, C. (2012) Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations. Nature Genetics, 44 8: 904-909. doi:10.1038/ng.2352

  • Perry, John R. B., Voight, Benjamin F., Yengo, Loic, Amin, Najaf, Dupuis, Josee, Ganser, Martha, Grallert, Harald, Navarro, Pau, Li, Man, Qi, Lu, Steinthorsdottir, Valgerdur, Scott, Robert A., Almgren, Peter, Arking, Dan E., Aulchenko, Yurii, Balkau, Beverley, Benediktsson, Rafn, Bergman, Richard N., Boerwinkle, Eric, Bonnycastle, Lori, Burtt, Noel P., Campbell, Harry, Charpentier, Guillaume, Collins, Francis S., Gieger, Christian, Green, Todd, Hadjadj, Samy, Hattersley, Andrew T., Herder, Christian, Hofman, Albert, Johnson, Andrew D., Kottgen, Anna, Kraft, Peter, Labrune, Yann, Langenberg, Claudia, Manning, Alisa K., Mohlke, Karen L., Morris, Andrew P., Oostra, Ben, Pankow, James, Petersen, Ann-Kristin, Pramstaller, Peter P., Prokopenko, Inga, Rathmann, Wolfgang, Rayner, William, Roden, Michael, Rudan, Igor, Rybin, Denis, Scott, Laura J., Sigurdsson, Gunnar, Sladek, Rob, Thorleifsson, Gudmar, Thorsteinsdottir, Unnur, Tuomilehto, Jaakko, Uitterlinden, Andre G., Vivequin, Sidonie, Weedon, Michael N., Wright, Alan F., Hu, Frank B., Illig, Thomas, Kao, Linda, Meigs, James B., Wilson, James F., Stefansson, Kari, van Duijn, Cornelia, Altschuler, David, Morris, Andrew D., Boehnke, Michael, McCarthy, Mark I., Froguel, Philippe, Palmer, Colin N. A., Wareham, Nicholas J., Groop, Leif, Frayling, Timothy M. and Cauchi, Stephane (2012) Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases. Plos Genetics, 8 5: . doi:10.1371/journal.pgen.1002741

  • Ichimura, Atsuhiko, Hirasawa, Akira, Poulain-Godefroy, Odile, Bonnefond, Amelie, Hara, Takafumi, Yengo, Loic, Kimura, Ikuo, Leloire, Audrey, Liu, Ning, Iida, Keiko, Choquet, Helene, Besnard, Philippe, Lecoeur, Cecile, Vivequin, Sidonie, Ayukawa, Kumiko, Takeuchi, Masato, Ozawa, Kentaro, Tauber, Maithe, Maffeis, Claudio, Morandi, Anita, Buzzetti, Raffaella, Elliott, Paul, Pouta, Anneli, Jarvelin, Marjo-Riitta, Koerner, Antje, Kiess, Wieland, Pigeyre, Marie, Caiazzo, Roberto, Van Hul, Wim, Van Gaal, Luc, Horber, Fritz, Balkau, Beverley, Levy-Marchal, Claire, Rouskas, Konstantinos, Kouvatsi, Anastasia, Hebebrand, Johannes, Hinney, Anke, Scherag, Andre, Pattou, Francois, Meyre, David, Koshimizu, Taka-aki, Wolowczuk, Isabelle, Tsujimoto, Gozoh and Froguel, Philippe (2012) Dysfunction of lipid sensor GPR120 leads to obesity in both mouse and human. Nature, 483 7389: 350-354. doi:10.1038/nature10798

  • Creemers, John W. M., Choquet, Helene, Stijnen, Pieter, Vatin, Vincent, Pigeyre, Marie, Beckers, Sigri, Meulemans, Sandra, Than, Manuel E., Yengo, Loic, Tauber, Maithe, Balkan, Beverley, Elliott, Paul, Jarvelin, Marjo-Riitta, Van Hul, Wim, Van Gaal, Luc, Horber, Fritz, Pattou, Francois, Froguel, Philippe and Meyre, David (2012) Heterozygous mutations causing partial prohormone convertase 1 deficiency contribute to human obesity. Diabetes, 61 2: 383-390. doi:10.2337/db11-0305

  • Marquez, Marcel, Huyvaert, Marlene, Perry, John R. B., Pearson, Richard D., Falchi, Mario, Morris, Andrew P., Vivequin, Sidonie, Lobbens, Stephane, Yengo, Loic, Gaget, Stefan, Pattou, Francois, Poulain-Godefroy, Odile, Charpentier, Guillaume, Carlsson, Lena M. S., Jacobson, Peter, Sjostrom, Lars, Lantieri, Olivier, Heude, Barbara, Walley, Andrew, Balkau, Beverley, Marre, Michel, Froguel, Philippe and Cauchi, Stephane (2012) Low-frequency variants in HMGA1 are not associated with type 2 diabetes risk. Diabetes, 61 2: 524-530. doi:10.2337/db11-0728

  • Bonnefond, Amelie, Clement, Nathalie, Fawcett, Katherine, Yengo, Loic, Vaillant, Emmanuel, Guillaume, Jean-Luc, Dechaume, Aurelie, Payne, Felicity, Roussel, Ronan, Czernichow, Sebastien, Hercberg, Serge, Hadjadj, Samy, Balkau, Beverley, Marre, Michel, Lantieri, Olivier, Langenberg, Claudia, Bouatia-Naji, Nabila, Charpentier, Guillaume, Vaxillaire, Martine, Rocheleau, Ghislain, Wareham, Nicholas J., Sladek, Robert, McCarthy, Mark I., Dina, Christian, Barroso, Ines, Jockers, Ralf and Froguel, Philippe (2012) Rare MTNR1B variants impairing melatonin receptor 1B function contribute to type 2 diabetes. Nature Genetics, 44 3: 297-301. doi:10.1038/ng.1053

  • Scott, Robert A., Lagou, Vasiliki, Welch, Ryan P., Wheeler, Eleanor, Montasser, May E., Luan, Jian’an, Mägi, Reedik, Strawbridge, Rona J., Rehnberg, Emil, Gustafsson, Stefan, Kanoni, Stavroula, Rasmussen-Torvik, Laura J., Yengo, Loïc, Lecoeur, Cecile, Shungin, Dmitry, Sanna, Serena, Sidore, Carlo, Johnson, Paul C. D., Jukema, J. Wouter, Johnson, Toby, Mahajan, Anubha, Verweij, Niek, Thorleifsson, Gudmar, Hottenga, Jouke-Jan, Shah, Sonia, Smith, Albert V., Sennblad, Bengt, Gieger, Christian, Salo, Perttu, Perola, Markus, Timpson, Nicholas J., Evans, David M., St Pourcain, Beate, Wu, Ying, Andrews, Jeanette S., Hui, Jennie, Bielak, Lawrence F., Zhao, Wei, Horikoshi, Momoko, Navarro, Pau, Isaacs, Aaron, O'Connell, Jeffrey R., Stirrups, Kathleen, Vitart, Veronique, Hayward, Caroline, Esko, Tõnu, Mihailov, Evelin, Fraser, Ross M., Fall, Tove, Voight, Benjamin F., Raychaudhuri, Soumya, Chen, Han, Lindgren, Cecilia M., Morris, Andrew P., Rayner, Nigel W., Robertson, Neil, Rybin, Denis, Liu, Ching-Ti, Beckmann, Jacques S., Willems, Sara M., Chines, Peter S., Jackson, Anne U., Kang, Hyun Min., Stringham, Heather M., Song, Kijoung, Tanaka, Toshiko, Peden, John F., Goel, Anuj, Hicks, Andrew A., An, Ping, Müller-Nurasyid, Martina, Franco-Cereceda, Anders, Folkersen, Lasse, Marullo, Letizia, Jansen, Hanneke, Oldehinkel, Albertine J., Bruinenberg, Marcel, Pankow, James S., North, Kari E., Forouhi, Nita G., Loos, Ruth J. F., Edkins, Sarah, Varga, Tibor V., Hallmans, Göran, Oksa, Heikki, Antonella, Mulas, Nagaraja, Ramaiah, Trompet, Stella, Ford, Ian, Bakker, Stephan J. L., Kong, Augustine, Kumari, Meena, Gigante, Bruna, Herder, Christian, Munroe, Patricia B., Caulfield, Mark, Antti, Jula, Mangino, Massimo, Small, Kerrin, Miljkovic, Iva, Liu, Yongmei, Atalay, Mustafa, Kiess, Wieland, James, Alan L., Rivadeneira, Fernando, Uitterlinden, Andre G., Palmer, Colin N. A., Doney, Alex S. F., Willemsen, Gonneke, Smit, Johannes H., Campbell, Susan, Polasek, Ozren, Bonnycastle, Lori L., Hercberg, Serge, Dimitriou, Maria, Bolton, Jennifer L., Fowkes, Gerard R., Kovacs, Peter, Lindström, Jaana, Zemunik, Tatijana, Bandinelli, Stefania, Wild, Sarah H., Basart, Hanneke V., Rathmann, Wolfgang, Grallert, Harald, Maerz, Winfried, Kleber, Marcus E., Boehm, Bernhard O., Peters, Annette, Pramstaller, Peter P., Province, Michael A., Borecki, Ingrid B., Hastie, Nicholas D., Rudan, Igor, Campbell, Harry, Watkins, Hugh, Farrall, Martin, Stumvoll, Michael, Ferrucci, Luigi, Waterworth, Dawn M., Bergman, Richard N., Collins, Francis S., Tuomilehto, Jaakko, Watanabe, Richard M., de Geus, Eco J. C., Penninx, Brenda W., Hofman, Albert, Oostra, Ben A., Psaty, Bruce M., Vollenweider, Peter, Wilson, James F., Wright, Alan F., Hovingh, G. Kees, Metspalu, Andres, Uusitupa, Matti, Magnusson, Patrik K. E., Kyvik, Kirsten O., Kaprio, Jaakko, Price, Jackie F., Dedoussis, George V., Deloukas, Panos, Meneton, Pierre, Lind, Lars, Boehnke, Michael, Shuldiner, Alan R., van Duijn, Cornelia M., Morris, Andrew D., Toenjes, Anke, Peyser, Patricia A., Beilby, John P., Körner, Antje, Kuusisto, Johanna, Laakso, Markku, Bornstein, Stefan R., Schwarz, Peter E. H., Lakka, Timo A., Rauramaa, Rainer, Adair, Linda S., Smith, George Davey, Spector, Tim D., Illig, Thomas, de Faire, Ulf, Hamsten, Anders, Gudnason, Vilmundur, Kivimaki, Mika, Hingorani, Aroon, Keinanen-Kiukaanniemi, Sirkka M., Saaristo, Timo E., Boomsma, Dorret I., Stefansson, Kari, van der Harst, Pim, Dupuis, Josée, Pedersen, Nancy L., Sattar, Naveed, Harris, Tamara B., Cucca, Francesco, Ripatti, Samuli, Salomaa, Veikko, Mohlke, Karen L., Balkau, Beverley, Froguel, Philippe, Pouta, Anneli, Jarvelin, Marjo-Riitta, Wareham, Nicholas J., Bouatia-Naji, Nabila, McCarthy, Mark I., Franks, Paul W., Meigs, James B., Teslovich, Tanya M., Florez, Jose C., Langenberg, Claudia, Ingelsson, Erik, Prokopenko, Inga and Barroso, Inês (2012) Large-scale association analyses identify new loci influencing glycemic traits and provide insight into the underlying biological pathways. Nature Genetics, 44 9: 991-1005. doi:10.1038/ng.2385

  • Bonnefond, Amelie, Lomberk, Gwen, Buttar, Navtej, Busiah, Kanetee, Vaillant, Emmanuel, Lobbens, Stephane, Yengo, Loic, Dechaume, Aurelie, Mignot, Brigitte, Simon, Albane, Scharfmann, Raphael, Neve, Bernadette, Tanyolac, Sinan, Hodoglugil, Ugur, Pattou, Francois, Cave, Helene, Iovanna, Juan, Stein, Roland, Polak, Michel, Vaxillaire, Martine, Froguel, Philippe and Urrutia, Raul (2011) Disruption of a novel Krüppel-like transcription factor p300-regulated pathway for insulin biosynthesis revealed by studies of the c.-331 INS mutation found in neonatal diabetes mellitus. Journal of Biological Chemistry, 286 32: 28414-28424. doi:10.1074/jbc.M110.215822

Conference Publication

  • Colodro-Conde, Lucía, Couvy-Duchesne, Baptiste, Whitfield, John B., Streit, Fabian, Gordon, Scott, Kemper, Kathryn E., Yengo, Loic, Zheng, Zhili, Trzaskowski, Maciej, de Zeeuw, Eveline L., Nivard, Michel G., Das, Marjolijn, Neale, Rachel E., MacGregor, Stuart, Olsen, Catherine M., Whiteman, David C., Boomsma, Dorret I., Yang, Jian, Rietschel, Marcella, McGrath, John J., Medland, Sarah E. and Martin, Nicholas G. (2018) Association between population density and genetic risk for schizophrenia. JAMA Psychiatry, 75 9: 901-910. doi:10.1001/jamapsychiatry.2018.1581

  • Zeng, Jian, de Vlaming, Ronald, Wu, Yang, Robinson, Matthew R., Lloyd-Jones, Luke R., Yengo, Loic, Yap, Chloe X., Xue, Angli, Sidorenko, Julia, Mcrae, Allan F., Powell, Joseph E., Montgomery, Grant W., Metspalu, Andres, Esko, Tonu, Gibson, Greg, Wray, Naomi R., Visscher, Peter M. and Yang, Jian (2018). Signatures of negative selection in the genetic architecture of human complex traits. In: 48th Annual Meeting of the Behavior-Genetics-Association (BGA), Boston MA, United States, (525-525). 20-23 June 2018.

  • Yengo, Loïc, Brochot, Céline and Péry, Alexandre (2010). Combined global sensitivity analysis and population PBPK modeling for assessing consistency of TCDD toxicokinetics data in mice. In: , , (7770-7771). . doi:10.1016/j.sbspro.2010.05.220

Grants (Administered at UQ)

PhD and MPhil Supervision

Current Supervision

  • Doctor Philosophy — Principal Advisor

    Other advisors:

Possible Research Projects

Note for students: The possible research projects listed on this page may not be comprehensive or up to date. Always feel free to contact the staff for more information, and also with your own research ideas.

  • Short Project description. This projects aims at utilising genetic and phenotypic data from ~500,000 participants of the UK Biobank to investigate phenotypic and genetic patterns induced by non-random mating in humans. Two forms of non-random mating will be investigated: assortative mating (resemblance between spouses) and inbreeding (mating between relatives). Findings from this project have implications in the analysis and interpretation of genome-wide association studies. The project will involve advanced modelling and statistical analyses of large volumes of data (genotyped and imputed SNP data, whole-exome sequencing, gene-expression, brain-imaging derived-traits).

    Candidate. Candidates with a background in quantitative/population genetics, statistics, mathematics and other quantitative fields will be considered. Programming skills (R, python, C/C++) and prior experience in analysing genetic data (e.g. GWAS) is desirable. (Note: if required, lectures on fundamental concepts of quantitative and population genetics can be taken as part of the PhD training).

    The Team. The successful candidate will be doing their research within the Program in Complex Traits Genomics (PCTG) Lab co-led by Professors Jian Yang, Naomi Wray and Peter Visscher, who are internationally recognized leaders in the field of complex traits genetics and have been recently listed among the world’s top one per cent most cited researchers of their field. PCTG provides a stimulating and highly interdisciplinary environment for PhD candidates to form and develop their research.

    PhD advisor. Dr Loic Yengo is a senior research officer of the Institute of Molecular Bioscience at the University of Queensland, Australia; and the Statistical Genetics Team leader within PCTG. He did his PhD in applied mathematics and is an expert in statistical modelling and analysis of genetic data. His research interests intersect quantitative genetics, genetic epidemiology and sociogenomics.

    Expected start. First semester of 2020.

    Contact. If you’re interested, please send your CV and cover letter and two references to Dr Loic Yengo: l.yengo@imb.uq.edu.au

    URLs

    IMB: https://imb.uq.edu.au/

    The team PCTG: http://cnsgenomics.com/

    PhD advisor: https://scholar.google.fr/citations?user=iv8dxlIAAAAJ&hl=en