Dr Sally Shrapnel

Senior Lecturer

Physics
Faculty of Science

Affiliate Senior Lecturer

Centre for Health Services Research
Faculty of Medicine
s.shrapnel@uq.edu.au
+61 7 336 56931

Overview

Dr Shrapnel is Deputy Director at the ARC Centre of Excellence for Engineered Quantum Systems where she works on topics in Quantum Machine Learning and Quantum Foundations. She also leads an international project to develop AI algorithms to predict acute kidney injury in COVID-19 for the ISARIC consortium. Her research combines theory, methodology, and applications across a broad range of disciplines.

Qualifications

  • Bachelor of Medical Science, The University of Queensland
  • Bachelor of Medicine and Bachelor of Surgery, The University of Queensland
  • Doctor of Philosophy, The University of Queensland
  • Master of Science, Imperial College

Publications

  • Kamel Rahimi, Amir, Canfell, Oliver J., Chan, Wilkin, Sly, Benjamin, Pole, Jason D., Sullivan, Clair and Shrapnel, Sally (2022). Machine learning models for diabetes management in acute care using electronic medical records: a systematic review. International Journal of Medical Informatics, 162 104758, 1-13. doi: 10.1016/j.ijmedinf.2022.104758

  • Li Bassi, Gianluigi, Gibbons, Kristen, Suen, Jacky Y., Dalton, Heidi J., White, Nicole, Corley, Amanda, Shrapnel, Sally, Hinton, Samuel, Forsyth, Simon, Laffey, John G., Fan, Eddy, Fanning, Jonathon P., Panigada, Mauro, Bartlett, Robert, Brodie, Daniel, Burrell, Aidan, Chiumello, Davide, Elhazmi, Alyaa, Esperatti, Mariano, Grasselli, Giacomo, Hodgson, Carol, Ichiba, Shingo, Luna, Carlos, Marwali, Eva, Merson, Laura, Murthy, Srinivas, Nichol, Alistair, Ogino, Mark, Pelosi, Paolo ... The COVID-19 Critical Care Consortium (2022). Early short course of neuromuscular blocking agents in patients with COVID-19 ARDS: a propensity score analysis. Critical Care, 26 (1) 141. doi: 10.1186/s13054-022-03983-5

  • Wainstein, Marina, MacDonald, Samual, Fryer, Daniel, Young, Kyle, Balan, Valeria, Begum, Husna, Burrell, Aidan, Citarella, Barbara Wanjiru, Cobb, J. Perren, Kelly, Sadie, Kennon, Kalynn, Lee, James, Merson, Laura, Murthy, Srinivas, Nichol, Alistair, Semple, Malcolm G., Strudwick, Samantha, Webb, Steven A., Rossignol, Patrick, Claure-Del Granado, Rolando, Shrapnel, Sally and the ISARIC Clinical Characterisation Group (2022). Use of an extended KDIGO definition to diagnose acute kidney injury in patients with COVID-19: a multinational study using the ISARIC–WHO clinical characterisation protocol. PLoS Medicine, 19 (4) e1003969, e1003969. doi: 10.1371/journal.pmed.1003969

View all Publications

Supervision

  • Doctor Philosophy

  • Doctor Philosophy

  • Doctor Philosophy

View all Supervision

Publications

Journal Article

  • Kamel Rahimi, Amir, Canfell, Oliver J., Chan, Wilkin, Sly, Benjamin, Pole, Jason D., Sullivan, Clair and Shrapnel, Sally (2022). Machine learning models for diabetes management in acute care using electronic medical records: a systematic review. International Journal of Medical Informatics, 162 104758, 1-13. doi: 10.1016/j.ijmedinf.2022.104758

  • Li Bassi, Gianluigi, Gibbons, Kristen, Suen, Jacky Y., Dalton, Heidi J., White, Nicole, Corley, Amanda, Shrapnel, Sally, Hinton, Samuel, Forsyth, Simon, Laffey, John G., Fan, Eddy, Fanning, Jonathon P., Panigada, Mauro, Bartlett, Robert, Brodie, Daniel, Burrell, Aidan, Chiumello, Davide, Elhazmi, Alyaa, Esperatti, Mariano, Grasselli, Giacomo, Hodgson, Carol, Ichiba, Shingo, Luna, Carlos, Marwali, Eva, Merson, Laura, Murthy, Srinivas, Nichol, Alistair, Ogino, Mark, Pelosi, Paolo ... The COVID-19 Critical Care Consortium (2022). Early short course of neuromuscular blocking agents in patients with COVID-19 ARDS: a propensity score analysis. Critical Care, 26 (1) 141. doi: 10.1186/s13054-022-03983-5

  • Wainstein, Marina, MacDonald, Samual, Fryer, Daniel, Young, Kyle, Balan, Valeria, Begum, Husna, Burrell, Aidan, Citarella, Barbara Wanjiru, Cobb, J. Perren, Kelly, Sadie, Kennon, Kalynn, Lee, James, Merson, Laura, Murthy, Srinivas, Nichol, Alistair, Semple, Malcolm G., Strudwick, Samantha, Webb, Steven A., Rossignol, Patrick, Claure-Del Granado, Rolando, Shrapnel, Sally and the ISARIC Clinical Characterisation Group (2022). Use of an extended KDIGO definition to diagnose acute kidney injury in patients with COVID-19: a multinational study using the ISARIC–WHO clinical characterisation protocol. PLoS Medicine, 19 (4) e1003969, e1003969. doi: 10.1371/journal.pmed.1003969

  • Kewming, Michael J. and Shrapnel, Sally (2022). Entropy production and fluctuation theorems in a continuously monitored optical cavity at zero temperature. Quantum, 6 685, 685. doi: 10.22331/q-2022-04-13-685

  • Lim, Han Chang, Austin, Jodie A., van der Vegt, Anton H., Rahimi, Amir Kamel, Canfell, Oliver J., Mifsud, Jayden, Pole, Jason D., Barras, Michael A., Hodgson, Tobias, Shrapnel, Sally and Sullivan, Clair M. (2022). Toward a learning health care system: a systematic review and evidence-based conceptual framework for implementation of clinical analytics in a digital hospital. Applied Clinical Informatics, 13 (02), 339-354. doi: 10.1055/s-0042-1743243

  • Reyes, Luis Felipe, Murthy, Srinivas, Garcia-Gallo, Esteban, Irvine, Mike, Merson, Laura, Martin-Loeches, Ignacio, Rello, Jordi, Taccone, Fabio S, Fowler, Robert A, Docherty, Annemarie B, Kartsonaki, Christiana, Aragao, Irene, Barrett, Peter W, Beane, Abigail, Burrell, Aidan, Cheng, Matthew Pellan, Christian, Michael D, Cidade, Jose Pedro, Citarella, Barbara Wanjiru, Donnelly, Christl A, Fernandes, Susana M, French, Craig, Haniffa, Rashan, Harrison, Ewen M, Ho, Antonia Ying Wai, Joseph, Mark, Khan, Irfan, Kho, Michelle E, Kildal, Anders Benjamin ... Olliaro, Piero L (2022). Clinical characteristics, risk factors and outcomes in patients with severe COVID-19 registered in the International Severe Acute Respiratory and Emerging Infection Consortium WHO clinical characterisation protocol: a prospective, multinational, multicentre, observational study. ERJ Open Research, 8 (1) 00552-2021, 00552-2021. doi: 10.1183/23120541.00552-2021

  • Abbas, Ali, Abdukahil, Sheryl Ann, Abdulkadir, Nurul Najmee, Abe, Ryuzo, Abel, Laurent, Absil, Lara, Acharya, Subhash, Acker, Andrew, Adachi, Shingo, Adam, Elisabeth, Adrião, Diana, Ageel, Saleh Al, Ahmed, Shakeel, Ain, Quratul, Ainscough, Kate, Aisa, Tharwat, Ait Hssain, Ali, Ait Tamlihat, Younes, Akimoto, Takako, Akmal, Ernita, Al Qasim, Eman, Alalqam, Razi, Alam, Tanvir, Al-dabbous, Tala, Alegesan, Senthilkumar, Alegre, Cynthia, Alessi, Marta, Alex, Beatrice, Alexandre, Kévin ... ISARIC Clinical Characterisation Group (2021). The value of open-source clinical science in pandemic response: lessons from ISARIC. The Lancet Infectious Diseases, 21 (12), 1623-1624. doi: 10.1016/S1473-3099(21)00565-X

  • ISARIC Clinical Characterisation Group, Hall, Matthew D., Baruch, Joaquín, Carson, Gail, Citarella, Barbara Wanjiru, Dagens, Andrew, Dankwa, Emmanuelle A., Donnelly, Christl A., Dunning, Jake, Escher, Martina, Kartsonaki, Christiana, Merson, Laura, Pritchard, Mark, Wei, Jia, Horby, Peter W., Rojek, Amanda, Olliaro, Piero L., Li Bassi, Gianluigi, Shrapnel, Sally and Suen, Jacky (2021). Ten months of temporal variation in the clinical journey of hospitalised patients with COVID-19: An observational cohort. eLife, 10, 1-30. doi: 10.7554/elife.70970

  • Li Bassi, Gianluigi, Suen, Jacky Y., White, Nicole, Dalton, Heidi J., Fanning, Jonathon, Corley, Amanda, Shrapnel, Sally, Hinton, Samuel, Forsyth, Simon, Parsons, Rex, Laffey, John G., Fan, Eddy, Bartlett, Robert, Brodie, Daniel, Burrell, Aidan, Chiumello, Davide, Elhazmi, Alyaa, Grasselli, Giacomo, Hodgson, Carol, Ichiba, Shingo, Luna, Carlos, Marwali, Eva, Merson, Laura, Murthy, Srinivas, Nichol, Alistair, Panigada, Mauro, Pelosi, Paolo, Torres, Antoni, Ng, Pauline Yeung ... on behalf of the COVID-19 Critical Care Consortium (2021). Assessment of 28-day in-hospital mortality in mechanically ventilated patients with coronavirus disease 2019: An international cohort study. Critical Care Explorations, 3 (11) e0567, e0567. doi: 10.1097/cce.0000000000000567

  • Goswami, K., Giarmatzi, C., Monterola, C., Shrapnel, S., Romero, J. and Costa, F. (2021). Experimental characterization of a non-Markovian quantum process. Physical Review A, 104 (2) 022432. doi: 10.1103/physreva.104.022432

  • ISARIC Clinical Characterisation Group, Shrapnel, Sally, Li Bassi, Gianluigi and Suen, Jacky (2021). COVID-19 symptoms at hospital admission vary with age and sex: results from the ISARIC prospective multinational observational study. Infection, 49 (5), 889-905. doi: 10.1007/s15010-021-01599-5

  • Li Bassi, Gianluigi, Suen, Jacky Y, Dalton, Heidi J, White, Nicole, Shrapnel, Sally, Fanning, Jonathon P, Liquet, Benoit, Hinton, Samuel, Vuorinen, Aapeli, Booth, Gareth, Millar, Jonathan E, Forsyth, Simon, Panigada, Mauro, Laffey, John, Brodie, Daniel, Fan, Eddy, Torres, Antoni, Chiumello, Davide, Corley, Amanda, Elhazmi, Alyaa, Hodgson, Carol, Ichiba, Shingo, Luna, Carlos, Murthy, Srinivas, Nichol, Alistair, Ng, Pauline Yeung, Ogino, Mark, Pesenti, Antonio, Trieu, Huynh Trung ... Obonyo, Gikenyi N. (2021). An appraisal of respiratory system compliance in mechanically ventilated covid-19 patients. Critical Care, 25 (1) 199, 1-22. doi: 10.1186/s13054-021-03518-4

  • Wainstein, Marina, Bello, Aminu K., Jha, Vivekanand, Harris, David C.H., Levin, Adeera, Gonzalez-Bedat, Maria C., Rosa-Diez, Guillermo J., Ferreiro Fuentes, Alejandro, Sola, Laura, Pecoits-Filho, Roberto, Claure-Del Granado, Rolando, Madero, Magdalena, Osman, Mohamed A., Saad, Syed, Zaidi, Deenaz, Lunney, Meaghan, Ye, Feng, Katz, Ivor J., Khan, Maryam, Shrapnel, Sally, Tonelli, Marcello, Okpechi, Ikechi G. and Johnson, David W. (2021). International Society of Nephrology Global Kidney Health Atlas: structures, organization, and services for the management of kidney failure in Latin America. Kidney International Supplements, 11 (2), e35-e46. doi: 10.1016/j.kisu.2021.01.005

  • Kewming, M. J., Shrapnel, S. and Milburn, G. J. (2021). Designing a physical quantum agent. Physical Review A, 103 (3) 032411, 1-7. doi: 10.1103/physreva.103.032411

  • Kirrane, Marianne D., Shrapnel, Sally, Ramanan, Mahesh, Clement, Pierre, Fraser, John F., Laupland, Kevin B., Sullivan, Clair M. and Shekar, Kiran (2021). Intensive care digital health response to emerging infectious disease outbreaks such as COVID-19. Anaesthesia and Intensive Care, 49 (2), 0310057X2097577-111. doi: 10.1177/0310057x20975777

  • Bassi, Gianluigi Li, Suen, Jacky, Barnett, Adrian Gerard, Corley, Amanda, Millar, Jonathan, Fanning, Jonathon, Lye, India, Colombo, Sebastiano, Wildi, Karin, Livingstone, Samantha, Abbate, Gabriella, Hinton, Samuel, Liquet, Benoit, Shrapnel, Sally, Dalton, Heidi and Fraser, John F. (2020). Design and rationale of the COVID-19 Critical Care Consortium international, multicentre, observational study. BMJ Open, 10 (12) e041417, e041417. doi: 10.1136/bmjopen-2020-041417

  • Kewming, M. J., Shrapnel, S., White, A. G. and Romero, J. (2020). Hiding ignorance using high dimensions. Physical Review Letters, 124 (25) 250401, 250401. doi: 10.1103/physrevlett.124.250401

  • Kewming, Michael, Shrapnel, Sally and Milburn, Gerard (2020). Quantum correlations in the Kerr Ising model. New Journal of Physics, 22 (5) 053042, 053042. doi: 10.1088/1367-2630/ab7255

  • Shrapnel, Sally, Costa, Fabio and Milburn, Gerard (2018). Quantum Markovianity as a supervised learning task. International Journal of Quantum Information, 16 (8) 1840010, 1840010. doi: 10.1142/s0219749918400105

  • Milburn, Gerard and Shrapnel, Sally (2018). Classical and quantum causal interventions. Entropy, 20 (9) 687, 687. doi: 10.3390/e20090687

  • Shrapnel, Sally and Costa, Fabio (2018). Causation does not explain contextuality. Quantum, 2 63, 63. doi: 10.22331/q-2018-05-18-63

  • Shrapnel, Sally, Costa, Fabio and Milburn, Gerard (2018). Updating the Born rule. New Journal of Physics, 20 (5) 053010, 053010. doi: 10.1088/1367-2630/aabe12

  • Shrapnel, Sally (2017). Discovering quantum causal models. The British Journal for the Philosophy of Science, 70 (1), 1-25. doi: 10.1093/bjps/axx044

  • Costa, Fabio and Shrapnel, Sally (2016). Quantum causal modelling. New Journal of Physics, 18 (6) 063032, 063032. doi: 10.1088/1367-2630/18/6/063032

  • Shrapnel, Sally (2014). Quantum causal explanation: or, why birds fly south. European Journal for Philosophy of Science, Online First (3), 409-423. doi: 10.1007/s13194-014-0094-5

Conference Publication

  • Young, Kyle, Booth, Gareth, Simpson, Becks, Dutton, Reuben and Shrapnel, Sally (2019). Deep neural network or dermatologist?. Second International Workshop, iMIMIC 2019, and 9th International Workshop, ML-CDS 2019, Held in Conjunction with MICCAI 2019, Shenzhen, China, 17 October 2019. Cham, Switzerland: Springer International Publishing. doi: 10.1007/978-3-030-33850-3_6

  • Kewming, Michael J., Shrapnel, Sally, White, Andrew G. and Romero, Jacquiline (2019). Ignorance of the whole does not imply ignorance of the parts: qudit random access codes in spatial modes of light. Quantum Information and Measurement, QIM 2019, Rome, Italy, 4 - 6 April 2019. Washington, DC, United States: The Optical Society. doi: 10.1364/QIM.2019.F5A.78

Other Outputs

PhD and MPhil Supervision

Current Supervision