The University of Queensland

Recent advances in the production of recombinant factor IX: bioprocessing and cell engineering

Beauglehole, Aiden C, Roche Recinos, Dinora, Pegg, Cassandra L, Lee, Yih Yean, Turnbull, Victor, Herrmann, Susann, Marcellin, Esteban, Howard, Christopher B and Schulz, Benjamin L (2022). Recent advances in the production of recombinant factor IX: bioprocessing and cell engineering. Critical Reviews in Biotechnology, 1-19. doi: 10.1080/07388551.2022.2036691

Extended characterisation of five archival tick-borne viruses provides insights for virus discovery in Australian ticks

O’Brien, Caitlin A., Huang, Bixing, Warrilow, David, Hazlewood, Jessamine E., Bielefeldt-Ohmann, Helle, Hall-Mendelin, Sonja, Pegg, Cassandra L., Harrison, Jessica J., Paramitha, Devina, Newton, Natalee D., Schulz, Benjamin L., Suhrbier, Andreas, Hobson-Peters, Jody and Hall, Roy A. (2022). Extended characterisation of five archival tick-borne viruses provides insights for virus discovery in Australian ticks. Parasites and Vectors, 15 (1) 59, 59. doi: 10.1186/s13071-022-05176-z

Author correction: community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis

Kawahara, Rebeca, Chernykh, Anastasia, Alagesan, Kathirvel, Bern, Marshall, Cao, Weiqian, Chalkley, Robert J., Cheng, Kai, Choo, Matthew S., Edwards, Nathan, Goldman, Radoslav, Hoffmann, Marcus, Hu, Yingwei, Huang, Yifan, Kim, Jin Young, Kletter, Doron, Liquet, Benoit, Liu, Mingqi, Mechref, Yehia, Meng, Bo, Neelamegham, Sriram, Nguyen-Khuong, Terry, Nilsson, Jonas, Pap, Adam, Park, Gun Wook, Parker, Benjamin L., Pegg, Cassandra L., Penninger, Josef M., Phung, Toan K., Pioch, Markus ... Thaysen-Andersen, Morten (2021). Author correction: community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis. Nature Methods, 19 (1), 130-130. doi: 10.1038/s41592-021-01368-0

The post-translational modification landscape of commercial beers

Kerr, Edward D., Caboche, Christopher H., Pegg, Cassandra L., Phung, Toan K., Gonzalez Viejo, Claudia, Fuentes, Sigfredo, Howes, Mark T., Howell, Kate and Schulz, Benjamin L. (2021). The post-translational modification landscape of commercial beers. Scientific Reports, 11 (1) 15890, 15890. doi: 10.1038/s41598-021-95036-0

Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis

Kawahara, Rebeca, Chernykh, Anastasia, Alagesan, Kathirvel, Bern, Marshall, Cao, Weiqian, Chalkley, Robert J., Cheng, Kai, Choo, Matthew S., Edwards, Nathan, Goldman, Radoslav, Hoffmann, Marcus, Hu, Yingwei, Huang, Yifan, Kim, Jin Young, Kletter, Doron, Liquet, Benoit, Liu, Mingqi, Mechref, Yehia, Meng, Bo, Neelamegham, Sriram, Nguyen-Khuong, Terry, Nilsson, Jonas, Pap, Adam, Park, Gun Wook, Parker, Benjamin L., Pegg, Cassandra L., Penninger, Josef M., Phung, Toan K., Pioch, Markus ... Thaysen-Andersen, Morten (2021). Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis. Nature Methods, 18 (11), 1304-1316. doi: 10.1038/s41592-021-01309-x

Limited evidence for the role of environmental factors in the unusual peak of influenza in Brisbane during the 2018-2019 Australian summer

Lu, Jianyun, Yang, Zhicong, Karawita, Anjana C., Bunte, Myrna, Chew, Keng Yih, Pegg, Cassandra, Mackay, Ian, Whiley, David and Short, Kirsty R. (2021). Limited evidence for the role of environmental factors in the unusual peak of influenza in Brisbane during the 2018-2019 Australian summer. The Science of the Total Environment, 776 145967, 145967. doi: 10.1016/j.scitotenv.2021.145967

N-glycosylation on Oryza sativa root germin-like protein 1 is conserved but not required for stability or activity

Rubbab, Tehseen, Pegg, Cassandra L., Phung, Toan K., Nouwens, Amanda S., Yeo, K.Y. Benjamin, Zacchi, Lucia F., Muhammad, Amna, Naqvi, S.M. Saqlan and Schulz, Benjamin L. (2021). N-glycosylation on Oryza sativa root germin-like protein 1 is conserved but not required for stability or activity. Biochemical and Biophysical Research Communications, 553, 72-77. doi: 10.1016/j.bbrc.2021.03.024

Coagulation factor IX analysis in bioreactor cell culture supernatant predicts quality of the purified product

Zacchi, Lucia F., Roche-Recinos, Dinora, Pegg, Cassandra L., Phung, Toan K., Napoli, Mark, Aitken, Campbell, Sandford, Vanessa, Mahler, Stephen M., Lee, Yih Yean, Schulz, Benjamin L. and Howard, Christopher B. (2021). Coagulation factor IX analysis in bioreactor cell culture supernatant predicts quality of the purified product. Communications Biology, 4 (1) 390, 390. doi: 10.1038/s42003-021-01903-x

A paucigranulocytic asthma host environment promotes the emergence of virulent influenza viral variants

Hulme, Katina D., Karawita, Anjana C., Pegg, Cassandra, Bunte, Myrna J. M., Bielefeldt-Ohmann, Helle, Bloxham, Conor J., Van den Hoecke, Silvie, Setoh, Yin Xiang, Vrancken, Bram, Spronken, Monique, Steele, Lauren E., Verzele, Nathalie A. J., Upton, Kyle R., Khromykh, Alexander A., Chew, Keng Yih, Sukkar, Maria, Phipps, Simon and Short, Kirsty R. (2021). A paucigranulocytic asthma host environment promotes the emergence of virulent influenza viral variants. eLife, 10 e61803, 1-21. doi: 10.7554/elife.61803

Quantitative data independent acquisition glycoproteomics of sparkling wine

Pegg, Cassandra L., Phung, Toan K., Caboche, Christopher H, Niamsuphap, Suchada, Bern, Marshall, Howell, Kate and Schulz, Benjamin L. (2021). Quantitative data independent acquisition glycoproteomics of sparkling wine. Molecular and Cellular Proteomics, 20 100020, 1-12. doi: 10.1074/mcp.ra120.002181

A unique relative of Rotifer birnavirus Isolated from Australian mosquitoes

O’Brien, Caitlin A., Pegg, Cassandra L., Nouwens, Amanda S., Bielefeldt-Ohmann, Helle, Huang, Bixing, Warrilow, David, Harrison, Jessica J., Haniotis, John, Schulz, Benjamin L., Paramitha, Devina, Colmant, Agathe M. G., Newton, Natalee D., Doggett, Stephen L., Watterson, Daniel, Hobson-Peters, Jody and Hall, Roy A. (2020). A unique relative of Rotifer birnavirus Isolated from Australian mosquitoes. Viruses, 12 (9) 1056, 1056. doi: 10.3390/v12091056

GlypNirO: An automated workflow for quantitative N- and O-linked glycoproteomic data analysis

Phung, Toan K, Pegg, Cassandra L and Schulz, Benjamin L (2020). GlypNirO: An automated workflow for quantitative N- and O-linked glycoproteomic data analysis. Beilstein Journal of Organic Chemistry, 16, 2127-2135. doi: 10.3762/bjoc.16.180

Identification of novel glycosylation events on human serum-derived factor IX

Pegg, Cassandra L., Zacchi, Lucia F., Recinos, Dinora Roche, Howard, Christopher B. and Schulz, Benjamin L. (2020). Identification of novel glycosylation events on human serum-derived factor IX. Glycoconjugate Journal, 37 (4), 471-483. doi: 10.1007/s10719-020-09922-2

Development of a rapid method to assess beer foamability based on relative protein content using RoboBEER and machine learning modeling

Gonzalez Viejo, Claudia, Caboche, Christopher H., Kerr, Edward D., Pegg, Cassandra L., Schulz, Benjamin L., Howell, Kate and Fuentes, Sigfredo (2020). Development of a rapid method to assess beer foamability based on relative protein content using RoboBEER and machine learning modeling. Beverages, 6 (2) 28, 28-11. doi: 10.3390/beverages6020028

Glycoproteomic measurement of site-specific polysialylation

Pelingon, Ruby, Pegg, Cassandra L., Zacchi, Lucia F., Phung, Toan K., Howard, Christopher B., Xu, Ping, Hardy, Matthew P., Owczarek, Catherine M. and Schulz, Benjamin L. (2020). Glycoproteomic measurement of site-specific polysialylation. Analytical Biochemistry, 596 113625, 113625. doi: 10.1016/j.ab.2020.113625

Evolution for improved secretion and fitness may be the selective pressures leading to the emergence of two NDM alleles

Zalucki, Yaramah M., Jen, Freda E.-C., Pegg, Cassandra L., Nouwens, Amanda S., Schulz, Benjamin L. and Jennings, Michael P. (2020). Evolution for improved secretion and fitness may be the selective pressures leading to the emergence of two NDM alleles. Biochemical and Biophysical Research Communications, 524 (3), 555-560. doi: 10.1016/j.bbrc.2020.01.135

Intramembrane protease RHBDL4 cleaves oligosaccharyltransferase subunits to target them for ER-associated degradation

Knopf, Julia D., Landscheidt, Nina, Pegg, Cassandra L., Schulz, Benjamin L., Kühnle, Nathalie, Chao, Chao-Wei, Huck, Simon and Lemberg, Marius K. (2020). Intramembrane protease RHBDL4 cleaves oligosaccharyltransferase subunits to target them for ER-associated degradation. Journal of Cell Science, 133 (6) jcs243790, 1-16. doi: 10.1242/jcs.243790

Glycoengineering of EphA4 Fc leads to a unique, long-acting and broad spectrum, Eph receptor therapeutic antagonist

Pegg, Cassandra L., Cooper, Leanne T., Zhao, Jing, Gerometta, Michael, Smith, Fiona M., Yeh, Michael, Bartlett, Perry F., Gorman, Jeffrey J. and Boyd, Andrew W. (2017). Glycoengineering of EphA4 Fc leads to a unique, long-acting and broad spectrum, Eph receptor therapeutic antagonist. Scientific Reports, 7 (1) 6519, 6519. doi: 10.1038/s41598-017-06685-z

Site-specific glycosylation of the Newcastle disease virus haemagglutinin-neuraminidase

Pegg, Cassandra L., Hoogland, Christine and Gorman, Jeffrey J. (2016). Site-specific glycosylation of the Newcastle disease virus haemagglutinin-neuraminidase. Glycoconjugate Journal, 34 (2), 1-17. doi: 10.1007/s10719-016-9750-7

Site-specific glycosylation of viral surface proteins using mass spectrometry

Pegg, Cassandra L., Phung, Toan K. and Schulz, Benjamin L. (2017). Site-specific glycosylation of viral surface proteins using mass spectrometry. Annual Meeting of the Society for Glycobiology , Portland, OR, United States, 05-08 November 2017. Cary, NC, United States: Oxford University Press. doi: 10.1093/glycob/cwx086

Structural characterisation of glycosylation of paramyxovirus attachment and fusion proteins by mass spectrometry

Pegg, Cassandra Lee (2017). Structural characterisation of glycosylation of paramyxovirus attachment and fusion proteins by mass spectrometry. PhD Thesis, School of Chemistry and Molecular Biosciences, The University of Queensland. doi: 10.14264/uql.2017.847