The University of Queensland

Quantitative modelling of the Waddington epigenetic landscape

Taherian Fard, Atefeh and Ragan, Mark A. (2019). Quantitative modelling of the Waddington epigenetic landscape. Computational stem cell biology: methods and protocols. (pp. 157-171) edited by Patrick Cahan. New York, United States: Humana Press. doi: 10.1007/978-1-4939-9224-9_7

Impaired signaling for neuromuscular synaptic maintenance is a feature of Motor Neuron Disease

Ding, Qiao, Kesavan, Kaamini, Lee, Kah Meng, Wimberger, Elyse, Robertson, Thomas, Gill, Melinder, Power, Dominique, Chang, Jeryn, Fard, Atefeh T., Mar, Jessica C., Henderson, Robert D., Heggie, Susan, McCombe, Pamela A., Jeffree, Rosalind L., Colditz, Michael J., Hilliard, Massimo A., Ng, Dominic C. H., Steyn, Frederik J., Phillips, William D., Wolvetang, Ernst J., Ngo, Shyuan T. and Noakes, Peter G. (2022). Impaired signaling for neuromuscular synaptic maintenance is a feature of Motor Neuron Disease. Acta Neuropathologica Communications, 10 (1) 61, 61. doi: 10.1186/s40478-022-01360-5

Redox signaling by glutathione peroxidase 2 links vascular modulation to metabolic plasticity of breast cancer

Ren, Zuen, Liang, Huizhi, Galbo, Phillip M., Dharmaratne, Malindrie, Kulkarni, Ameya S., Fard, Atefeh Taherian, Aoun, Marie Louise, Martinez-Lopez, Nuria, Suyama, Kimita, Benard, Outhiriaradjou, Zheng, Wei, Liu, Yang, Albanese, Joseph, Zheng, Deyou, Mar, Jessica C., Singh, Rajat, Prystowsky, Michael B., Norton, Larry and Hazan, Rachel B. (2022). Redox signaling by glutathione peroxidase 2 links vascular modulation to metabolic plasticity of breast cancer. Proceedings of the National Academy of Sciences, 119 (8) e2107266119. doi: 10.1073/pnas.2107266119

Computational methods for single-cell imaging and omics data integration

Watson, Ebony Rose, Taherian Fard, Atefeh and Mar, Jessica Cara (2022). Computational methods for single-cell imaging and omics data integration. Frontiers in Molecular Biosciences, 8 768106, 768106. doi: 10.3389/fmolb.2021.768106

Leptin antagonism inhibits prostate cancer xenograft growth and progression

Philp, Lisa K., Rockstroh, Anja, Sadowski, Martin C., Taherian Fard, Atefeh, Lehman, Melanie, Tevz, Gregor, Libério, Michelle S., Bidgood, Charles L., Gunter, Jennifer H., McPherson, Stephen, Bartonicek, Nenad, Wade, John D., Otvos, Laszlo and Nelson, Colleen C. (2021). Leptin antagonism inhibits prostate cancer xenograft growth and progression. Endocrine-Related Cancer, 28 (5), 353-375. doi: 10.1530/erc-20-0405

Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility

Adolphe, Christelle, Xue, Angli, Fard, Atefeh Taherian, Genovesi, Laura A., Yang, Jian and Wainwright, Brandon J. (2021). Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility. Genome Medicine, 13 (1) 19, 19. doi: 10.1186/s13073-021-00827-9

Therapy-induced lipid uptake and remodeling underpin ferroptosis hypersensitivity in prostate cancer

Tousignant, Kaylyn D., Rockstroh, Anja, Poad, Berwyck L. J., Talebi, Ali, Young, Reuben S. E., Fard, Atefeh Taherian, Gupta, Rajesh, Zang, Tuo, Wang, Chenwei, Lehman, Melanie L., Swinnen, Johan, Blanksby, Stephen J., Nelson, Colleen C. and Sadowski, Martin C. (2020). Therapy-induced lipid uptake and remodeling underpin ferroptosis hypersensitivity in prostate cancer. Cancer & Metabolism, 8 (1) 11. doi: 10.1186/s40170-020-00217-6

Lipid uptake is an androgen-enhanced lipid supply pathway associated with prostate cancer disease progression and bone metastasis

Tousignant, Kaylyn D., Rockstroh, Anja, Fard, Atefeh Taherian, Lehman, Melanie L., Wang, Chenwei, McPherson, Stephen J., Philp, Lisa K., Bartonicek, Nenad, Dinger, Marcel E., Nelson, Colleen C. and Sadowski, Martin C. (2019). Lipid uptake is an androgen-enhanced lipid supply pathway associated with prostate cancer disease progression and bone metastasis. Molecular Cancer Research, 17 (5), 1166-1179. doi: 10.1158/1541-7786.MCR-18-1147

A molecular portrait of epithelial-mesenchymal plasticity in prostate cancer associated with clinical outcome (vol 38, pg 913, 2019)

Stylianou, Nataly, Lehman, Melanie L., Wang, Chenwei, Fard, Atefeh Taherian, Rockstroh, Anja, Fazli, Ladan, Jovanovic, Lidija, Ward, Micheal, Sadowski, Martin C., Kashyap, Abhishek S., Buttyan, Ralph, Gleave, Martin E., Westbrook, Thomas F., Williams, Elizabeth D., Gunter, Jennifer H., Nelson, Colleen C. and Hollier, Brett G. (2019). A molecular portrait of epithelial-mesenchymal plasticity in prostate cancer associated with clinical outcome (vol 38, pg 913, 2019). Oncogene, 38 (13), 2436-2436. doi: 10.1038/s41388-018-0587-3

A molecular portrait of epithelial–mesenchymal plasticity in prostate cancer associated with clinical outcome

Stylianou, Nataly, Lehman, Melanie L., Wang, Chenwei, Fard, Atefeh Taherian, Rockstroh, Anja, Fazli, Ladan, Jovanovic, Lidija, Ward, Micheal, Sadowski, Martin C., Kashyap, Abhishek S., Buttyan, Ralph, Gleave, Martin E., Westbrook, Thomas F., Williams, Elizabeth D., Gunter, Jennifer H., Nelson, Colleen C. and Hollier, Brett G. (2018). A molecular portrait of epithelial–mesenchymal plasticity in prostate cancer associated with clinical outcome. Oncogene, 38 (7), 913-934. doi: 10.1038/s41388-018-0488-5

Modeling the attractor landscape of disease progression: a network-based approach

Taherian Fard, Atefeh and Ragan, Mark A. (2017). Modeling the attractor landscape of disease progression: a network-based approach. Frontiers in Genetics, 8 (APR) 48, 48. doi: 10.3389/fgene.2017.00048

Not just a colourful metaphor: modelling the landscape of cellular development using Hopfield networks

Taherian Fard, Atefeh, Srihari, Sriganesh, Mar, Jessica C. and Ragan, Mark A. (2016). Not just a colourful metaphor: modelling the landscape of cellular development using Hopfield networks. NPJ Systems Biology and Applications, 2 (1) 16001, 16001. doi: 10.1038/npjsba.2016.1

Breast cancer classification: linking molecular mechanisms to disease prognosis

Taherian-Fard, Atefeh, Srihari, Sriganesh and Ragan, Mark A. (2014). Breast cancer classification: linking molecular mechanisms to disease prognosis. Briefings in Bioinformatics, 16 (3) bbu020, 461-474. doi: 10.1093/bib/bbu020

Comparison of dynamic responses of cellular metabolites in Escherichia coli to pulse addition of substrates

Hoque, Md. Aminul, Fard, Atefeh Taherian, Rahman, Mosfequr, Alattas, Omar, Akazawa, Kohei and Merican, Amir Feisal (2011). Comparison of dynamic responses of cellular metabolites in Escherichia coli to pulse addition of substrates. Biologia, 66 (6) 954, 954-966. doi: 10.2478/s11756-011-0136-9

Comparative analysis of organophosphate degrading enzymes from diverse species

Salman, Amna, Taherian Fard, Atefeh, Nasir, Arshan and Bokhari, Habib (2010). Comparative analysis of organophosphate degrading enzymes from diverse species. Bioinformation, 5 (2), 67-72.

Comparative analysis of organophosphate degrading enzymes from diverse species

Salman, Amna, Fard, Atefeh Taherian, Nasir, Arshan and Bokhari, Habib (2010). Comparative analysis of organophosphate degrading enzymes from diverse species. Bioinformation, 5 (2), 67-72. doi: 10.6026/97320630005067

In silico comparative genome analysis of malaria parasite Plasmodium falciparum and Plasmodium vivax chromosome 4

Fard, Atefeh Taherian, Salman, Amna, Kazemi, Bahram and Bokhari, Habib (2009). In silico comparative genome analysis of malaria parasite Plasmodium falciparum and Plasmodium vivax chromosome 4. Parasitology Research, 104 (6), 1361-1364. doi: 10.1007/s00436-009-1338-8

Redox regulation of tumor cell heterogeneity in the PyMT mammary tumor model revealed by single cell RNA sequencing

Ren, Zuen, Dharmaratne, Malindrie, Kulkarni, Ameya, Fard, Atefeh Taherian, Mar, Jessica, Galbo, Phillip M., Liu, Yang, Zheng, Deyou, Liang, Huizhi, Benard, Outhiriaradjou, Suyama, Kimita, Prystowsky, Michael B., Norton, Larry and Hazan, Rachel B. (2020). Redox regulation of tumor cell heterogeneity in the PyMT mammary tumor model revealed by single cell RNA sequencing. AACR Annual Meeting, Online, 22-24 June, 2020. Philadelphia, PA, United States: American Association for Cancer Research. doi: 10.1158/1538-7445.am2020-4426

snrRNA-seq_muscle_dataset

Ngo, Shyuan, Power, Dominique, Andersen, Stacey, Taherian Fard, Atefeh, Chang, Jeryn and Steyn, Frederik (2022). snrRNA-seq_muscle_dataset. The University of Queensland. (Dataset) doi: 10.48610/0106c8e

Modelling the landscape of cellular development and disease

Taherian Fard, Atefeh (2016). Modelling the landscape of cellular development and disease. PhD Thesis, Institute for Molecular Bioscience, The University of Queensland. doi: 10.14264/uql.2016.1009