The University of Queensland

Improved Cladocopium goreaui Genome Assembly Reveals Features of a Facultative Coral Symbiont and the Complex Evolutionary History of Dinoflagellate Genes

Chen, Yibi, Shah, Sarah, Dougan, Katherine E., van Oppen, Madeleine J. H., Bhattacharya, Debashish and Chan, Cheong Xin (2022). Improved Cladocopium goreaui Genome Assembly Reveals Features of a Facultative Coral Symbiont and the Complex Evolutionary History of Dinoflagellate Genes. Microorganisms, 10 (8) 1662, 1662. doi: 10.3390/microorganisms10081662

Genome-guided analysis of seven weed species reveals conserved sequence and structural features of key gene targets for herbicide development

Shah, Sarah, Lonhienne, Thierry, Murray, Cody-Ellen, Chen, Yibi, Dougan, Katherine E., Low, Yu Shang, Williams, Craig M., Schenk, Gerhard, Walter, Gimme H., Guddat, Luke W. and Chan, Cheong Xin (2022). Genome-guided analysis of seven weed species reveals conserved sequence and structural features of key gene targets for herbicide development. Frontiers in Plant Science, 13 909073. doi: 10.3389/fpls.2022.909073

Alignment-free analysis of whole-genome sequences from Symbiodiniaceae reveals different phylogenetic signals in distinct regions

Lo, Rosalyn, Dougan, Katherine E., Chen, Yibi, Shah, Sarah, Bhattacharya, Debashish and Chan, Cheong Xin (2022). Alignment-free analysis of whole-genome sequences from Symbiodiniaceae reveals different phylogenetic signals in distinct regions. Frontiers in Plant Science, 13 815714, 1-13. doi: 10.3389/fpls.2022.815714

Genome-powered classification of microbial eukaryotes: focus on coral algal symbionts

Dougan, Katherine E., González-Pech, Raúl A., Stephens, Timothy G., Shah, Sarah, Chen, Yibi, Ragan, Mark A., Bhattacharya, Debashish and Chan, Cheong Xin (2022). Genome-powered classification of microbial eukaryotes: focus on coral algal symbionts. Trends in Microbiology, 30 (9), 831-840. doi: 10.1016/j.tim.2022.02.001

Comparative genomics supports that Brazilian bioethanol Saccharomyces cerevisiae comprise a unified group of domesticated strains related to Cachaça spirit yeasts

Jacobus, Ana Paula, Stephens, Timothy G., Youssef, Pierre, González-Pech, Raul, Ciccotosto-Camp, Michael M., Dougan, Katherine E., Chen, Yibi, Basso, Luiz Carlos, Frazzon, Jeverson, Chan, Cheong Xin and Gross, Jeferson (2021). Comparative genomics supports that Brazilian bioethanol Saccharomyces cerevisiae comprise a unified group of domesticated strains related to Cachaça spirit yeasts. Frontiers in Microbiology, 12 644089, 644089. doi: 10.3389/fmicb.2021.644089

Comparison of 15 dinoflagellate genomes reveals extensive sequence and structural divergence in family Symbiodiniaceae and genus Symbiodinium

Gonzalez-Pech, Raul A., Stephens, Timothy G., Chen, Yibi, Mohamed, Amin R., Cheng, Yuanyuan, Shah, Sarah, Dougan, Katherine E., Fortuin, Michael D. A., Lagorce, Remi, Burt, David W., Bhattacharya, Debashish, Ragan, Mark A. and Chan, Cheong Xin (2021). Comparison of 15 dinoflagellate genomes reveals extensive sequence and structural divergence in family Symbiodiniaceae and genus Symbiodinium. BMC Biology, 19 (1) 73, 73. doi: 10.1186/s12915-021-00994-6

Genomic adaptations to an endolithic lifestyle in the coral-associated alga Ostreobium

Iha, Cintia, Dougan, Katherine E., Varela, Javier A., Avila, Viridiana, Jackson, Christopher J., Bogaert, Kenny A., Chen, Yibi, Judd, Louise M., Wick, Ryan, Holt, Kathryn E., Pasella, Marisa M., Ricci, Francesco, Repetti, Sonja I., Medina, Mónica, Marcelino, Vanessa R., Chan, Cheong Xin and Verbruggen, Heroen (2021). Genomic adaptations to an endolithic lifestyle in the coral-associated alga Ostreobium. Current Biology, 31 (7), 1-10.e1–e5. doi: 10.1016/j.cub.2021.01.018

Nutrient pollution and predation differentially affect innate immune pathways in the coral Porites porites

Dougan, Katherine E., Ladd, Mark C., Fuchs, Corinne, Thurber, Rebecca Vega, Burkepile, Deron E. and Rodriguez-Lanetty, Mauricio (2020). Nutrient pollution and predation differentially affect innate immune pathways in the coral Porites porites. Frontiers in Marine Science, 7. doi: 10.3389/fmars.2020.563865

Free-living and symbiotic lifestyles of a thermotolerant coral endosymbiont display profoundly distinct transcriptomes under both stable and heat stress conditions

Bellantuono, Anthony J., Dougan, Katherine E., Granados-Cifuentes, Camila and Rodriguez-Lanetty, Mauricio (2019). Free-living and symbiotic lifestyles of a thermotolerant coral endosymbiont display profoundly distinct transcriptomes under both stable and heat stress conditions. Molecular Ecology, 28 (24), 5265-5281. doi: 10.1111/mec.15300

Inter-domain microbial diversity within the coral holobiont Siderastrea siderea from two depth habitats

Bonthond, Guido, Merselis, Daniel G., Dougan, Katherine E., Graff, Trevor, Todd, William, Fourqurean, James W. and Rodriguez-Lanetty, Mauricio (2018). Inter-domain microbial diversity within the coral holobiont Siderastrea siderea from two depth habitats. PeerJ, 6 e4323, e4323. doi: 10.7717/peerj.4323

Life history of the symbiotically luminous cardinalfish Siphamia tubifer (Perciformes: Apogonidae)

Gould, A. L., Dougan, K. E., Koenigbauer, S. T. and Dunlap, P. V. (2016). Life history of the symbiotically luminous cardinalfish Siphamia tubifer (Perciformes: Apogonidae). Journal of Fish Biology, 89 (2), 1359-1377. doi: 10.1111/jfb.13063

Genome evolution in the obligate but environmentally active luminous symbionts of flashlight fish

Hendry, Tory A., de Wet, Jeffrey R., Dougan, Katherine E. and Dunlap, Paul V. (2016). Genome evolution in the obligate but environmentally active luminous symbionts of flashlight fish. Genome Biology and Evolution, 8 (7), 2203-2213. doi: 10.1093/gbe/evw161

Improved assembled genome of Cladocopium goreaui SCF055

Chen, Yibi, Shah, Sarah, Dougan, Katherine E. , van Oppen, Madeleine, J. H. , Bhattacharya, Debashish and Chan, Cheong Xin (2022). Improved assembled genome of Cladocopium goreaui SCF055. The University of Queensland. (Dataset) doi: 10.48610/fba3259

Genomic resources of seven Australian weed species of national significance

Shah, Sarah, Lonhienne, Thierry, Murray, Cody-Ellen, Chen, Yibi, Dougan, Katherine E., Low, Yu Shang, Williams, Craig M., Schenk, Gerhard, Walter, Gimme H., Guddat, Luke W. and Chan, Cheong Xin (2022). Genomic resources of seven Australian weed species of national significance. The University of Queensland. (Dataset) doi: 10.48610/c22c10c