The University of Queensland

Signatures of negative selection in the genetic architecture of human complex traits

Zeng, Jian, de Vlaming, Ronald, Wu, Yang, Robinson, Matthew R., Lloyd-Jones, Luke R., Yengo, Loic, Yap, Chloe X., Xue, Angli, Sidorenko, Julia, McRae, Allan F., Powell, Joseph E., Montgomery, Grant W., Metspalu, Andres, Esko, Tonu, Gibson, Greg, Wray, Naomi R., Visscher, Peter M. and Yang, Jian (2018) Signatures of negative selection in the genetic architecture of human complex traits. Nature Genetics, 50 5: 746-753. doi:10.1038/s41588-018-0101-4

Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets

Zhu, Zhihong, Zhang, Futao, Hu, Han, Bakshi, Andrew, Robinson, Matthew R., Powell, Joseph E., Montgomery,Grant W., Goddard, Michael E., Wray, Naomi R., Visscher, Peter M. and Yang, Jian (2016) Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets. Nature Genetics, 48 5: 481-487. doi:10.1038/ng.3538

Common SNPs explain a large proportion of the heritability for human height

Yang, Jian, Benyamin, Beben, McEvoy, Brian P., Gordon, Scott, Henders, Anjali K., Nyholt, Dale R., Madden, Pamela A., Heath, Andrew C., Martin, Nicholas G., Montgomery, Grant W., Goddard, Michael E. and Visscher, Peter M. (2010) Common SNPs explain a large proportion of the heritability for human height. Nature Genetics, 42 7: 565-569. doi:10.1038/ng.608

Genome-wide complex trait analysis (GCTA): methods, data analyses, and interpretations

Yang, J., Lee, (Sang) Hong, Goddard, M. E. and Visscher, Peter (2013). Genome-wide complex trait analysis (GCTA): methods, data analyses, and interpretations. In Cedric Gondro, Julius van der Werf and Ben Hayes (Ed.), Genome-Wide Association Studies and Genomic Prediction (pp. 215-236) New York, NY U.S.A.: Humana Press. doi:10.1007/978-1-62703-447-0_9

Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank

Wang, Huanwei, Zhang, Futao, Zeng, Jian, Wu, Yang, Kemper, Kathryn E., Xue, Angli, Zhang, Min, Powell, Joseph E., Goddard, Michael E., Wray, Naomi R., Visscher, Peter M., McRae, Allan F. and Yang, Jian (2019) Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank. Science Advances, 5 8: eaaw3538. doi:10.1126/sciadv.aaw3538

Mendelian randomization integrating GWAS and eQTL data reveals genetic determinants of complex and clinical traits

Porcu, Eleonora, Rüeger, Sina, Lepik, Kaido, Agbessi, Mawussé, Ahsan, Habibul, Alves, Isabel, Andiappan, Anand, Arindrarto, Wibowo, Awadalla, Philip, Battle, Alexis, Beutner, Frank, Jan Bonder, Marc, Boomsma, Dorret, Christiansen, Mark, Claringbould, Annique, Deelen, Patrick, Esko, Tõnu, Favé, Marie-Julie, Franke, Lude, Frayling, Timothy, Gharib, Sina A., Gibson, Gregory, Heijmans, Bastiaan T., Hemani, Gibran, Jansen, Rick, Kähönen, Mika, Kalnapenkis, Anette, Kasela, Silva, Kettunen, Johannes, Kim, Yungil, Kirsten, Holger, Kovacs, Peter, Krohn, Knut, Kronberg-Guzman, Jaanika, Kukushkina, Viktorija, Lee, Bernett, Lehtimäki, Terho, Loeffler, Markus, Marigorta, Urko M., Mei, Hailang, Milani, Lili, Montgomery, Grant W., Müller-Nurasyid, Martina, Nauck, Matthias, Nivard, Michel, Penninx, Brenda, Perola, Markus, Pervjakova, Natalia, Pierce, Brandon L., Powell, Joseph, Prokisch, Holger, Psaty, Bruce M., Raitakari, Olli T., Ripatti, Samuli, Rotzschke, Olaf, Saha, Ashis, Scholz, Markus, Schramm, Katharina, Seppälä, Ilkka, Slagboom, Eline P., Stehouwer, Coen D. A., Stumvoll, Michael, Sullivan, Patrick, ‘t Hoen, Peter A. C., Teumer, Alexander, Thiery, Joachim, Tong, Lin, Tönjes, Anke, van Dongen, Jenny, van Iterson, Maarten, van Meurs, Joyce, Veldink, Jan H., Verlouw, Joost, Visscher, Peter M., Völker, Uwe, Võsa, Urmo, Westra, Harm-Jan, Wijmenga, Cisca, Yaghootkar, Hanieh, Yang, Jian, Zeng, Biao, Zhang, Futao, Arindrarto, Wibowo, Beekman, Marian, Boomsma, Dorret I., Bot, Jan, Deelen, Joris, Deelen, Patrick, Franke, Lude, Heijmans, Bastiaan T., ’t Hoen, Peter A. C., Hofman, Bert A., Hottenga, Jouke J., Isaacs, Aaron, Bonder, Marc Jan, Jhamai, P. Mila, Jansen, Rick, Kielbasa, Szymon M., Lakenberg, Nico, Luijk, René, Mei, Hailiang, Moed, Matthijs, Nooren, Irene, Pool, René, Schalkwijk, Casper G., Slagboom, P. Eline, Stehouwer, Coen D. A., Suchiman, H. Eka D., Swertz, Morris A., Tigchelaar, Ettje F., Uitterlinden, André G., van den Berg, Leonard H., van der Breggen, Ruud, van der Kallen, Carla J. H., van Dijk, Freerk, van Dongen, Jenny, van Duijn, Cornelia M., van Galen, Michiel, van Greevenbroek, Marleen M. J., van Heemst, Diana, van Iterson, Maarten, van Meurs, Joyce, van Rooij, Jeroen, van’t Hof, Peter, van Zwet, Erik. W., Vermaat, Martijn, Veldink, Jan H., Verbiest, Michael, Verkerk, Marijn, Wijmenga, Cisca, Zhernakova, Dasha V., Zhernakova, Sasha, Santoni, Federico A., Reymond, Alexandre and Kutalik, Zoltán (2019) Mendelian randomization integrating GWAS and eQTL data reveals genetic determinants of complex and clinical traits. Nature Communications, 10 . doi:10.1038/s41467-019-10936-0

The effect of X-linked dosage compensation on complex trait variation

Sidorenko, Julia, Kassam, Irfahan, Kemper, Kathryn E., Zeng, Jian, Lloyd-Jones, Luke R., Montgomery, Grant W., Gibson, Greg, Metspalu, Andres, Esko, Tonu, Yang, Jian, McRae, Allan F. and Visscher, Peter M. (2019) The effect of X-linked dosage compensation on complex trait variation. Nature Communications, 10 1: 3009. doi:10.1038/s41467-019-10598-y

Comprehensive multiple eQTL detection and its application to GWAS interpretation

Zeng, Biao, Lloyd-Jones, Luke R., Montgomery, Grant W., Metspalu, Andres, Esko, Tonu, Franke, Lude, Vosa, Urmo, Claringbould, Annique, Brigham, Kenneth L., Quyyumi, Arshed A., Idaghdour, Youssef, Yang, Jian, Visscher, Peter M., Powell, Joseph E. and Gibson, Greg (2019) Comprehensive multiple eQTL detection and its application to GWAS interpretation. Genetics, 212 3: 905-918. doi:10.1534/genetics.119.302091

Correction: GWAS on family history of Alzheimer’s disease

Marioni, Riccardo E., Harris, Sarah E., Zhang, Qian, McRae, Allan F., Hagenaars, Saskia P., Hill, W. David, Davies, Gail, Ritchie, Craig W., Gale, Catharine R., Starr, John M., Goate, Alison M., Porteous, David J., Yang, Jian, Evans, Kathryn L., Deary, Ian J., Wray, Naomi R. and Visscher, Peter M. (2019) Correction: GWAS on family history of Alzheimer’s disease. Translational Psychiatry, 9 1: 161. doi:10.1038/s41398-019-0498-2

OSCA: a tool for omic-data-based complex trait analysis

Zhang, Futao, Chen, Wenhan, Zhu, Zhihong, Zhang, Qian, Nabais, Marta F., Qi, Ting, Deary, Ian J., Wray, Naomi R., Visscher, Peter M., McRae, Allan F. and Yang, Jian (2019) OSCA: a tool for omic-data-based complex trait analysis. Genome Biology, 20 1: 107. doi:10.1186/s13059-019-1718-z

Exploring the role of genetic confounding in the association between maternal and offspring body mass index: evidence from three birth cohorts

Bond, Tom A., Karhunen, Ville, Wielscher, Matthias, Auvinen, Juha, Männikkö, Minna, Keinänen-Kiukaanniemi, Sirkka, Gunter, Marc J., Felix, Janine F., Prokopenko, Inga, Yang, Jian, Visscher, Peter M., Evans, David M, Sebert, Sylvain, Lewin, Alex, O’Reilly, Paul F., Lawlor, Debbie A. and Jarvelin, Marjo-Riitta (2019) Exploring the role of genetic confounding in the association between maternal and offspring body mass index: evidence from three birth cohorts. International Journal of Epidemiology, . doi:10.1093/ije/dyz095

Tissue-specific sex-differences in human gene expression

Kassam, Irfahan, Wu, Yang, Yang, Jian, Visscher, Peter M. and McRae, Allan F. (2019) Tissue-specific sex-differences in human gene expression. Human Molecular Genetics, . doi:10.1093/hmg/ddz090

Genome-wide association study of medication-use and associated disease in the UK Biobank

Wu, Yeda, Byrne, Enda M., Zheng, Zhili, Kemper, Kathryn E., Yengo, Loic, Mallett, Andrew J., Yang, Jian, Visscher, Peter M. and Wray, Naomi R. (2019) Genome-wide association study of medication-use and associated disease in the UK Biobank. Nature Communications, 10 1: . doi:10.1038/s41467-019-09572-5

Mendelian randomisation analyses find pulmonary factors mediate the effect of height on coronary artery disease

Marouli, Eirini, Del Greco, M. Fabiola, Astley, Christina M., Yang, Jian, Ahmad, Shafqat, Berndt, Sonja I., Caulfield, Mark J., Evangelou, Evangelos, McKnight, Barbara, Medina-Gomez, Carolina, van Vliet-Ostaptchouk, Jana V., Warren, Helen R., Zhu, Zhihong, Hirschhorn, Joel N., Loos, Ruth J. F., Kutalik, Zoltan and Deloukas, Panos (2019) Mendelian randomisation analyses find pulmonary factors mediate the effect of height on coronary artery disease. Communications Biology, 2 1: . doi:10.1038/s42003-019-0361-2

Genetic regulation of methylation in human endometrium and blood and gene targets for reproductive diseases

Mortlock, Sally, Restuadi, Restuadi, Levien, Rupert, Girling, Jane E., Holdsworth-Carson, Sarah J., Healey, Martin, Zhu, Zhihong, Qi, Ting, Wu, Yang, Lukowski, Samuel W., Rogers, Peter A. W., Yang, Jian, McRae, Allan F., Fung, Jenny N. and Montgomery, Grant W. (2019) Genetic regulation of methylation in human endometrium and blood and gene targets for reproductive diseases. Clinical Epigenetics, 11 1: . doi:10.1186/s13148-019-0648-7

Author correction: Repurposing large health insurance claims data to estimate genetic and environmental contributions in 560 phenotypes

Lakhani, Chirag M., Tierney, Braden T., Manrai, Arjun K., Yang, Jian, Visscher, Peter M. and Patel, Chirag J. (2019) Author correction: Repurposing large health insurance claims data to estimate genetic and environmental contributions in 560 phenotypes. Nature Genetics, 51 4: 764-765. doi:10.1038/s41588-019-0377-z

Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences

Karlsson Linnér, Richard, Biroli, Pietro, Kong, Edward, Meddens, S. Fleur W., Wedow, Robbee, Fontana, Mark Alan, Lebreton, Maël, Tino, Stephen P., Abdellaoui, Abdel, Hammerschlag, Anke R., Nivard, Michel G., Okbay, Aysu, Rietveld, Cornelius A., Timshel, Pascal N., Trzaskowski, Maciej, Vlaming, Ronald de, Zünd, Christian L., Bao, Yanchun, Buzdugan, Laura, Caplin, Ann H., Chen, Chia-Yen, Eibich, Peter, Fontanillas, Pierre, Gonzalez, Juan R., Joshi, Peter K., Karhunen, Ville, Kleinman, Aaron, Levin, Remy Z., Lill, Christina M., Meddens, Gerardus A., Muntané, Gerard, Sanchez-Roige, Sandra, Rooij, Frank J. van, Taskesen, Erdogan, Wu, Yang, Zhang, Futao, 23and Me Research Team, eQTLgen Consortium, International Cannabis Consortium, Social Science Genetic Association Consortium, Auton, Adam, Boardman, Jason D., Clark, David W., Conlin, Andrew, Dolan, Conor C., Fischbacher, Urs, Groenen, Patrick J. F., Harris, Kathleen Mullan, Hasler, Gregor, Hofman, Albert, Ikram, Mohammad A., Jain, Sonia, Karlsson, Robert, Kessler, Ronald C., Kooyman, Maarten, MacKillop, James, Männikkö, Minna, Morcillo-Suarez, Carlos, McQueen, Matthew B., Schmidt, Klaus M., Smart, Melissa C., Sutter, Matthias, Thurik, A. Roy, Uitterlinden, André G., White, Jon, Wit, Harriet de, Yang, Jian, Bertram, Lars, Boomsma, Dorret I., Esko, Tõnu, Fehr, Ernst, Hinds, David A., Johannesson, Magnus, Kumari, Meena, Laibson, David, Magnusson, Patrik K. E., Meyer, Michelle N., Navarro, Arcadi, Palmer, Abraham A., Pers, Tune H., Schunk, Daniel, Posthuma, Danielle, Stein, Murray B., Svento, Rauli, Tiemeier, Henning, Timmers, Paul R. H. J., Turley, Patrick, Ursano, Robert J., Wagner, Gert G., Wilson, James F., Gratten, Jacob, Lee, James J., Cesarini, David, Benjamin, Daniel J., Koellinger, Philipp D. and Beauchamp, Jonathan P. (2019) Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences. Nature Genetics, 51 2: 245-257. doi:10.1038/s41588-018-0309-3

Repurposing large health insurance claims data to estimate genetic and environmental contributions in 560 phenotypes

Lakhani, Chirag M., Tierney, Braden T., Manrai, Arjun K., Yang, Jian, Visscher, Peter M. and Patel, Chirag J. (2019) Repurposing large health insurance claims data to estimate genetic and environmental contributions in 560 phenotypes. Nature Genetics, 51 2: 327-334. doi:10.1038/s41588-018-0313-7

Meta-analysis of genome-wide association studies for body fat distribution in 694 649 individuals of European ancestry

Pulit, Sara L., Stoneman, Charli, Morris, Andrew P., Wood, Andrew R., Glastonbury, Craig A., Tyrrell, Jessica, Yengo, Loïc, Ferreira, Teresa, Marouli, Eirini, Ji, Yingjie, Yang, Jian, Jones, Samuel, Beaumont, Robin, Croteau-Chonka, Damien C., Winkler, Thomas W., Consortium, Giant, Hattersley, Andrew T., Loos, Ruth J F, Hirschhorn, Joel N., Visscher, Peter M., Frayling, Timothy M., Yaghootkar, Hanieh and Lindgren, Cecilia M. (2019) Meta-analysis of genome-wide association studies for body fat distribution in 694 649 individuals of European ancestry. Human Molecular Genetics, 28 1: 166-174. doi:10.1093/hmg/ddy327

Dissection of genetic variation and evidence for pleiotropy in male pattern baldness

Yap, Chloe X., Sidorenko, Julia, Wu, Yang, Kemper, Kathryn E., Yang, Jian, Wray, Naomi R., Robinson, Matthew R. and Visscher, Peter M. (2018) Dissection of genetic variation and evidence for pleiotropy in male pattern baldness. Nature Communications, 9 1: 5407. doi:10.1038/s41467-018-07862-y

Identification of 55,000 replicated DNA methylation QTL

McRae, Allan F., Marioni, Riccardo E., Shah, Sonia, Yang, Jian, Powell, Joseph E., Harris, Sarah E., Gibson, Jude, Henders, Anjali K., Bowdler, Lisa, Painter, Jodie N., Murphy, Lee, Martin, Nicholas G., Starr, John M., Wray, Naomi R., Deary, Ian J., Visscher, Peter M. and Montgomery, Grant W. (2018) Identification of 55,000 replicated DNA methylation QTL. Scientific Reports, 8 1: . doi:10.1038/s41598-018-35871-w

Leveraging GWAS for complex traits to detect signatures of natural selection in humans

Guo, Jing, Yang, Jian and Visscher, Peter M. (2018) Leveraging GWAS for complex traits to detect signatures of natural selection in humans. Current Opinion in Genetics and Development, 53 9-14. doi:10.1016/j.gde.2018.05.012

Imprint of assortative mating on the human genome

Yengo, Loic, Robinson, Matthew R., Keller, Matthew C., Kemper, Kathryn E., Yang, Yuanhao, Trzaskowski, Maciej, Gratten, Jacob, Turley, Patrick, Cesarini, David, Benjamin, Daniel J., Wray, Naomi R., Goddard, Michael E., Yang, Jian and Visscher, Peter M. (2018) Imprint of assortative mating on the human genome. Nature Human Behaviour, 2 12: 948-954. doi:10.1038/s41562-018-0476-3

Is schizophrenia a risk factor for breast cancer?—evidence from genetic data

Byrne, Enda M., Ferreira, Manuel A.R., Xue, Angli, Lindström, Sara, Jiang, Xia, Yang, Jian, Easton, Douglas F., Wray, Naomi R. and Chenevix-Trench, Georgia (2018) Is schizophrenia a risk factor for breast cancer?—evidence from genetic data. Schizophrenia Bulletin, . doi:10.1093/schbul/sby162

Meta-analysis of genome-wide association studies for height and body mass index in ∼700000 individuals of European ancestry

Yengo, Loic, Sidorenko, Julia, Kemper, Kathryn E., Zheng, Zhili, Wood, Andrew R., Weedon, Michael N., Frayling, Timothy M., Hirschhorn, Joel, Yang, Jian and Visscher, Peter M. (2018) Meta-analysis of genome-wide association studies for height and body mass index in ∼700000 individuals of European ancestry. Human Molecular Genetics, 27 20: 3641-3649. doi:10.1093/hmg/ddy271

Genetic regulation of disease risk and endometrial gene expression highlights potential target genes for endometriosis and polycystic ovarian syndrome

Fung, Jenny N., Mortlock, Sally, Girling, Jane E., Holdsworth-Carson, Sarah J., Teh, Wan Tinn, Zhu, Zhihong, Lukowski, Samuel W., McKinnon, Brett D., McRae, Allan, Yang, Jian, Healey, Martin, Powell, Joseph E., Rogers, Peter A. W. and Montgomery, Grant W (2018) Genetic regulation of disease risk and endometrial gene expression highlights potential target genes for endometriosis and polycystic ovarian syndrome. Scientific Reports, 8 1: 11424. doi:10.1038/s41598-018-29462-y

Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes

Xue, Angli, Wu, Yang, Zhu, Zhihong, Zhang, Futao, Kemper, Kathryn E., Zheng, Zhili, Yengo, Loic, Lloyd-Jones, Luke R., Sidorenko, Julia, Wu, Yeda, eQTLGen Consortium, McRae, Allan F., Visscher, Peter M., Zeng, Jian and Yang, Jian (2018) Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes. Nature Communications, 9 1: 2941. doi:10.1038/s41467-018-04951-w

Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals

Lee, James J., Wedow, Robbee, Okbay, Aysu, Kong, Edward, Maghzian, Omeed, Zacher, Meghan, Nguyen-Viet, Tuan Anh, Bowers, Peter, Sidorenko, Julia, Karlsson Linnér, Richard, Fontana, Mark Alan, Kundu, Tushar, Lee, Chanwook, Li, Hui, Li, Ruoxi, Royer, Rebecca, Timshel, Pascal N., Walters, Raymond K., Willoughby, Emily A., Yengo, Loïc, 23andMe Research Team, COGENT (Cognitive Genomics Consortium), Social Science Genetic Association Consortium, Alver, Maris, Bao, Yanchun, Clark, David W., Day, Felix R., Furlotte, Nicholas A., Joshi, Peter K., Kemper, Kathryn E., Kleinman, Aaron, Langenberg, Claudia, Mägi, Reedik, Trampush, Joey W., Verma, Shefali Setia, Wu, Yang, Lam, Max, Zhao, Jing Hua, Zheng, Zhili, Boardman, Jason D, Campbell, Harry, Freese, Jeremy, Harris, Kathleen Mullan, Hayward, Caroline, Herd, Pamela, Kumari, Meena, Lencz, Todd, Luan, Jian'an, Malhotra, Anil K., Metspalu, Andres, Milani, Lili, Ong, Ken K., Perry, John R. B., Porteous, David J., Ritchie, Marylyn D., Smart, Melissa C., Smith, Blair H., Tung, Joyce Y., Wareham, Nicholas J., Wilson, James F., Beauchamp, Jonathan P., Conley, Dalton C., Esko, Tõnu, Lehrer, Steven F., Magnusson, Patrik K. E., Oskarsson, Sven, Pers, Tune H., Robinson, Matthew R., Thom, Kevin, Watson, Chelsea, Chabris, Christopher F., Meyer, Michelle N., Laibson, David I., Yang, Jian, Johannesson, Magnus, Koellinger, Philipp D., Turley, Patrick, Visscher, Peter M., Benjamin, Daniel J. and Cesarini, David (2018) Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals. Nature Genetics, 50 8: 1112-1121. doi:10.1038/s41588-018-0147-3

Common disease is more complex than implied by the core gene omnigenic model

Wray, Naomi R., Wijmenga, Cisca, Sullivan, Patrick F., Yang, Jian and Visscher, Peter M. (2018) Common disease is more complex than implied by the core gene omnigenic model. Cell, 173 7: 1573-1580. doi:10.1016/j.cell.2018.05.051

Identifying gene targets for brain-related traits using transcriptomic and methylomic data from blood

Qi, Ting, Wu, Yang, Zeng, Jian, Zhang, Futao, Xue, Angli, Jiang, Longda, Zhu, Zhihong, Kemper, Kathryn, Yengo, Loic, Zheng, Zhili, eQTLGen Consortium, Marioni, Riccardo E., Montgomery, Grant W., Deary, Ian J., Wray, Naomi R., Visscher, Peter M., McRae, Allan F. and Yang, Jian (2018) Identifying gene targets for brain-related traits using transcriptomic and methylomic data from blood. Nature Communications, 9 1: 2282. doi:10.1038/s41467-018-04558-1

GWAS on family history of Alzheimer's disease

Marioni, Riccardo E., Harris, Sarah E., Zhang, Qian, McRae, Allan F., Hagenaars, Saskia P., Hill, W. David, Davies, Gail, Ritchie, Craig W., Gale, Catharine R., Starr, John M., Goate, Alison M., Porteous, David J., Yang, Jian, Evans, Kathryn L., Deary, Ian J., Wray, Naomi R. and Visscher, Peter M. (2018) GWAS on family history of Alzheimer's disease. Translational Psychiatry, 8 1: 99. doi:10.1038/s41398-018-0150-6

Global genetic differentiation of complex traits shaped by natural selection in humans

Guo, Jing, Wu, Yang, Zhu, Zhihong, Zheng, Zhili, Trzaskowski, Maciej, Zeng, Jian, Robinson, Matthew R., Visscher, Peter M. and Yang, Jian (2018) Global genetic differentiation of complex traits shaped by natural selection in humans. Nature Communications, 9 1: 1865. doi:10.1038/s41467-018-04191-y

Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression

Wray, Naomi R., Ripke, Stephan, Mattheisen, Manuel, Trzaskowski, Maciej, Byrne, Enda M., Abdellaoui, Abdel, Adams, Mark J., Agerbo, Esben, Air, Tracy M., Andlauer, Till M. F., Bacanu, Silviu-Alin, Baekvad-Hansen, Marie, Beekman, Aartjan F. T., Bigdeli, Tim B., Binder, Elisabeth B., Blackwood, Douglas R. H., Bryois, Julien, Buttenschon, Henriette N., Bybjerg-Grauholm, Jonas, Cai, Na, Castelao, Enrique, Christensen, Jane Hvarregaard, Clarke, Toni-Kim, Coleman, Jonathan I. R., Colodro-Conde, Lucia, Couvy-Duchesne, Baptiste, Craddock, Nick, Crawford, Gregory E., Crowley, Cheynna A., Dashti, Hassan S., Davies, Gail, Deary, Ian J., Degenhardt, Franziska, Derks, Eske M., Direk, Nese, Dolan, Conor V., Dunn, Erin C., Eley, Thalia C., Eriksson, Nicholas, Escott-Price, Valentina, Kiadeh, Farnush Hassan Farhadi, Finucane, Hilary K., Forstner, Andreas J., Frank, Josef, Gaspar, Helena A., Gill, Michael, Giusti-Rodriguez, Paola, Goes, Fernando S., Gordon, Scott D., Grove, Jakob, Hall, Lynsey S., Hannon, Eilis, Hansen, Christine Soholm, Hansen, Thomas F., Herms, Stefan, Hickie, Ian B., Hoffmann, Per, Homuth, Georg, Horn, Carsten, Hottenga, Jouke-Jan, Hougaard, David M., Hu, Ming, Hyde, Craig L., Ising, Marcus, Jansen, Rick, Jin, Fulai, Jorgenson, Eric, Knowles, James A., Kohane, Isaac S., Kraft, Julia, Kretzschmar, Warren W., Krogh, Jesper, Kutalik, Zoltan, Lane, Jacqueline M., Li, Yihan, Li, Yun, Lind, Penelope A., Liu, Xiaoxiao, Lu, Leina, MacIntyre, Donald J., MacKinnon, Dean F., Maier, Robert M., Maier, Wolfgang, Marchini, Jonathan, Mbarek, Hamdi, McGrath, Patrick, McGuffin, Peter, Medland, Sarah E., Mehta, Divya, Middeldorp, Christel M., Mihailov, Evelin, Milaneschi, Yuri, Milani, Lili, Mill, Jonathan, Mondimore, Francis M., Montgomery, Grant W., Mostafavi, Sara, Mullins, Niamh, Nauck, Matthias, Ng, Bernard, Nivard, Michel G., Nyholt, Dale R., O'Reilly, Paul F., Oskarsson, Hogni, Owen, Michael J., Painter, Jodie N., Pedersen, Carsten Bocker, Pedersen, Marianne Giortz, Peterson, Roseann E., Pettersson, Erik, Peyrot, Wouter J., Pistis, Giorgio, Posthuma, Danielle, Purcell, Shaun M., Quiroz, Jorge A., Qvist, Per, Rice, John P., Riley, Brien P., Rivera, Margarita, Mirza, Saira Saeed, Saxena, Richa, Schoevers, Robert, Schulte, Eva C., Shen, Ling, Shi, Jianxin, Shyn, Stanley I., Sigurdsson, Engilbert, Sinnamon, Grant B. C., Smit, Johannes H., Smith, Daniel J., Stefansson, Hreinn, Steinberg, Stacy, Stockmeier, Craig A., Streit, Fabian, Strohmaier, Jana, Tansey, Katherine E., Teismann, Henning, Teumer, Alexander, Thompson, Wesley, Thomson, Pippa A., Thorgeirsson, Thorgeir E., Tian, Chao, Traylor, Matthew, Treutlein, Jens, Trubetskoy, Vassily, Uitterlinden, Andre G., Umbricht, Daniel, Van der Auwera, Sandra, van Hemert, Albert M., Viktorin, Alexander, Visscher, Peter M., Wang, Yunpeng, Webb, Bradley T., Weinsheimer, Shantel Marie, Wellmann, Juegen, Willemsen, Gonneke, Witt, Stephanie H., Wu, Yang, Xi, Hualin S., Yang, Jian, Zhang, Futao, Arolt, Volker, Baune, Bernhard T., Berger, Klaus, Boomsma, Dorret I., Cichon, Sven, Dannlowski, Udo, de Geus, E. C. J., DePaulo, J. Raymond, Domenici, Enrico, Domschke, Katharina, Esko, Tonu, Grabe, Hans J., Hamilton, Steven P., Hayward, Caroline, Heath, Andrew C., Hinds, David A., Kendler, Kenneth S., Kloiber, Stefan, Lewis, Glyn, Li, Qingqin S., Lucae, Susanne, Madden, Pamela F. A., Magnusson, Patrik K., Martin, Nicholas G., McIntosh, Andrew M., Metspalu, Andres, Mors, Ole, Mortensen, Preben Bo, Mueller-Myhsok, Bertram, Nordentoft, Merete, Noethen, Markus M., O'Donovan, Michael C., Paciga, Sara A., Pedersen, Nancy L., Penninx, Brenda W. J. H., Perlis, Roy H., Porteous, David J., Potash, James B., Preisig, Martin, Rietschel, Marcella, Schaefer, Catherine, Schulze, Thomas G., Smoller, Jordan W., Stefansson, Kari, Tiemeier, Henning, Uher, Rudolf, Voelzke, Henry, Weissman, Myrna M., Werge, Thomas, Winslow, Ashley R., Lewis, Cathryn M., Levinson, Douglas F., Breen, Gerome, Borglum, Anders D. and Sullivan, Patrick F. (2018) Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression. Nature Genetics, 50 5: 668-+. doi:10.1038/s41588-018-0090-3

Comparison of methods that use whole genome data to estimate the heritability and genetic architecture of complex traits

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Signatures of negative selection in the genetic architecture of human complex traits

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Narrow-sense heritability estimation of complex traits using identity-by-descent information

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Improving genetic prediction by leveraging genetic correlations among human diseases and traits

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Integrative analysis of omics summary data reveals putative mechanisms underlying complex traits

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Reply to Kardos et al.: estimation of inbreeding depression from SNP data

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Transformation of summary statistics from linear mixed model association on all-or-none traits to odds ratio

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Causal associations between risk factors and common diseases inferred from GWAS summary data

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Predictive accuracy of combined genetic and environmental risk scores

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Whole-exome sequencing in amyotrophic lateral sclerosis suggests NEK1 is a risk gene in Chinese

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Partitioning phenotypic variance due to parent-of-origin effects using genomic relatedness matrices

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Inference in Psychiatry via 2-Sample Mendelian Randomization-From Association to Causal Pathway?

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Cross-ethnic meta-analysis identifies association of the GPX3-TNIP1 locus with amyotrophic lateral sclerosis

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Genetic correlations reveal the shared genetic architecture of transcription in human peripheral blood

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Concepts, estimation and interpretation of SNP-based heritability

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Constraints on eQTL fine mapping in the presence of multisite local regulation of gene expression

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Detection and quantification of inbreeding depression for complex traits from SNP data

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Genotype-covariate interaction effects and the heritability of adult body mass index

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10 years of GWAS discovery: biology, function, and translation

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Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism

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Quantifying the mapping precision of genome-wide association studies using whole-genome sequencing data

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Genetic signatures of high-altitude adaptation in Tibetans

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The Genetic Architecture of Gene Expression in Peripheral Blood (vol 100, pg 228, 2017)

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Genetic evidence of assortative mating in humans

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The genetic architecture of gene expression in peripheral blood

Lloyd-Jones, Luke R., Holloway, Alexander, McRae, Allan, Yang, Jian, Small, Kerrin, Zeng, Biao, Bakshi, Andrew, Metspalu, Andres, Dermitzakis, Manolis, Gibson, Greg, Spector, Tim, Montgomery, Grant, Esko, Tonu, Visscher, Peter M. and Powell, Joseph E. (2017) The genetic architecture of gene expression in peripheral blood. American Journal of Human Genetics, 100 2: 228-237. doi:10.1016/j.ajhg.2016.12.008

Autosomal genetic control of human gene expression does not differ across the sexes

Kassam, Irfahan, Lloyd-Jones, Luke, Holloway, Alexander, Small, Kerrin S., Zeng, Biao, Bakshi, Andrew, Metspalu, Andres, Gibson, Greg, Spector, Tim D., Esko, Tonu, Montgomery, Grant W., Powell, Joseph E., Yang, Jian, Visscher, Peter M. and McRae, Allan F. (2016) Autosomal genetic control of human gene expression does not differ across the sexes. Genome Biology, 17 1: 248.1-248.10. doi:10.1186/s13059-016-1111-0

Identification of miRNAs as non-invasive biomarkers for early diagnosis of lung cancers

Wang, Wenzhe, Li, Weili, Ding, Mingjian, Yuan, Haining, Yang, Jian, Meng, Wen, Jin, Er, Wang, Xiaoju and Ma, Shenglin (2016) Identification of miRNAs as non-invasive biomarkers for early diagnosis of lung cancers. Tumor Biology, 37 12: 16287-16293. doi:10.1007/s13277-016-5442-y

Assessing the genetic overlap between BMI and cognitive function

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52 genetic loci influencing myocardial mass

van der Harst, Pim, van Setten, Jessica, Verweij, Niek, Vogler, Georg, Franke, Lude, Maurano, Matthew T., Wang, Xinchen, Mateo Leach, Irene, Eijgelsheim, Mark, Sotoodehnia, Nona, Hayward, Caroline, Sorice, Rossella, Meirelles, Osorio, Lyytikainen, Leo-Pekka, Polasek, Ozren, Tanaka, Toshiko, Arking, Dan E., Ulivi, Sheila, Trompet, Stella, Muller-Nurasyid, Martina, Smith, Albert V., Dorr, Marcus, Kerr, Kathleen F., Magnani, Jared W., Del Greco, Fabiola, Zhang, Weihua, Nolte, Ilja M., Silva, Claudia T., Padmanabhan, Sandosh, Tragante, Vinicius, Esko, Tõnu, Abecasis, Gonçalo R., Adriaens, Michiel E., Andersen, Karl, Barnett, Phil, Bis, Joshua C., Bodmer, Rolf, Buckley, Brendan M., Campbell, Harry, Cannon, Megan V., Chakravarti, Aravinda, Chen, Lin Y., Delitala, Alessandro, Devereux, Richard B., Doevendans, Pieter A., Dominiczak, Anna F., Ferrucci, Luigi, Ford, Ian, Gieger, Christian, Harris, Tamara B., Haugen, Eric, Heinig, Matthias, Hernandez, Dena G., Hillege, Hans L., Hirschhorn, Joel N., Hofman, Albert, Hubner, Norbert, Hwang, Shih-Jen, Iorio, Annamaria, Kahonen, Mika, Kellis, Manolis, Kolcic, Ivana, Kooner, Ishminder K., Kooner, Jaspal S., Kors, Jan A., Lakatta, Edward G., Lage, Kasper, Launer, Lenore J., Levy, Daniel, Lundby, Alicia, Macfarlane, Peter W., May, Dalit, Meitinger, Thomas, Metspalu, Andres, Nappo, Stefania, Naitza, Silvia, Neph, Shane, Nord, Alex S., Nutile, Teresa, Okin, Peter M., Olsen, Jesper V., Oostra, Ben A., Penninger, Josef M., Pennacchio, Len A., Pers, Tune H., Perz, Siegfried, Peters, Annette, Pinto, Yigal M., Pfeufer, Arne, Pilia, Maria Grazia, Pramstaller, Peter P., Prins, Bram P., Raitakari, Olli T., Raychaudhuri, Soumya, Rice, Ken M., Rossin, Elizabeth J., Rotter, Jerome I., Schafer, Sebastian, Schlessinger, David, Schmidt, Carsten O., Sehmi, Jobanpreet, Sillje, Herman H. W., Sinagra, Gianfranco, Sinner, Moritz F., Slowikowski, Kamil, Soliman, Elsayed Z., Spector, Timothy D., Spiering, Wilko, Stamatoyannopoulos, John A., Stolk, Ronald P., Strauch, Konstantin, Tan, Sian-Tsung, Tarasov, Kirill V., Trinh, Bosco, Uitterlinden, Andre G., van den Boogaard, Malou, van Duijn, Cornelia M., van Gilst, Wiek H., Viikari, Jorma S., Visscher, Peter M., Vitart, Veronique, Volker, Uwe, Waldenberger, Melanie, Weichenberger, Christian X., Westra, Harm-Jan, Wijmenga, Cisca, Wolffenbuttel, Bruce H., Yang, Jian, Bezzina, Connie R., Munroe, Patricia B., Snieder, Harold, Wright, Alan F., Rudan, Igor, Boyer, Laurie A., Asselbergs, Folkert W., van Veldhuisen, Dirk J., Stricker, Bruno H., Psaty, Bruce M., Ciullo, Marina, Sanna, Serena, Lehtimaki, Terho, Wilson, James F., Bandinelli, Stefania, Alonso, Alvaro, Gasparini, Paolo, Jukema, J. Wouter, Kaab, Stefan, Gudnason, Vilmundur, Felix, Stephan B., Heckbert, Susan R., de Boer, Rudolf A., Newton-Cheh, Christopher, Hicks, Andrew A., Chambers, John C., Jamshidi, Yalda, Visel, Axel, Christoffels, Vincent M., Isaacs, Aaron, Samani, Nilesh J. and de Bakker, Paul I. W. (2016) 52 genetic loci influencing myocardial mass. Journal of the American College of Cardiology, 68 13: 1435-1448. doi:10.1016/j.jacc.2016.07.729

Fast set-based association analysis using summary data from GWAS identifies novel gene loci for human complex traits

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Genome-wide association analyses identify new risk variants and the genetic architecture of amyotrophic lateral sclerosis

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Across-cohort QC analyses of GWAS summary statistics from complex traits

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GCTA-GREML accounts for linkage disequilibrium when estimating genetic variance from genome-wide SNPs

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Predicting gene targets from integrative analyses of summary data from GWAS and eQTL studies for 28 human complex traits

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A plethora of pleiotropy across complex traits

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Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses

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Genome-wide association study identifies 74 loci associated with educational attainment

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Evidence for genetic overlap between schizophrenia and age at first birth in women

Mehta, Divya, Tropf, Felix C., Gratten, Jacob, Bakshi, Andrew, Zhu, Zhihong, Bacanu, Silviu-Alin, Hemani, Gibran, Magnusson, Patrik K. E., Barban, Nicola, Esko, Tonu, Metspalu, Andres, Snieder, Harold, Mowry, Bryan J., Kendler, Kenneth S., Yang, Jian, Visscher, Peter M., McGrath, John J., Mills, Melinda C., Wray, Naomi R. and Lee, S. Hong (2016) Evidence for genetic overlap between schizophrenia and age at first birth in women. Jama Psychiatry, 73 5: 497-505. doi:10.1001/jamapsychiatry.2016.0129

Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets

Zhu, Zhihong, Zhang, Futao, Hu, Han, Bakshi, Andrew, Robinson, Matthew R., Powell, Joseph E., Montgomery,Grant W., Goddard, Michael E., Wray, Naomi R., Visscher, Peter M. and Yang, Jian (2016) Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets. Nature Genetics, 48 5: 481-487. doi:10.1038/ng.3538

New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk

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Genome-wide genetic homogeneity between sexes and populations for human height and body mass index

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The transcriptional landscape of age in human peripheral blood

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Modeling Linkage Disequilibrium Increases Accuracy of Polygenic Risk Scores

Vilhjalmsson, Bjarni J., Yang, Jian, Finucane, Hilary K., Gusev, Alexander, Lindstrom, Sara, Ripke, Stephan, Genovese, Giulio, Loh, Po-Ru, Bhatia, Gaurav, Do, Ron, Hayeck, Tristan, Won, Hong-Hee, Kathiresan, Sekar, Pato, Michele, Pato, Carlos, Tamimi, Rulla, Stahl, Eli, Zaitlen, Noah, Pasaniuc, Bogdan, Belbin, Gillian, Kenny, Eimear E., Schierup, Mikkel H., De Jager, Philip, Patsopouos, Nikolaos A., Mc Carroll, Steve, Daly, Mark, Purce, Shaun, Chasman, Daniel, Neale, Benjamin, Goddard, Michael, Visscher, Peter M., Kraft, Peter, Patterson, Nick and Price, Alkes L. (2015) Modeling Linkage Disequilibrium Increases Accuracy of Polygenic Risk Scores. American Journal of Human Genetics, 97 4: 576-592. doi:10.1016/j.ajhg.2015.09.001

The UK10K project identifies rare variants in health and disease

The UK10K Consortium, Evans, David M., Kemp, John P., Visscher, Peter M. and Yang, Jian (2015) The UK10K project identifies rare variants in health and disease. Nature, 526 7571: 82-89. doi:10.1038/nature14962

The influence of age and sex on genetic associations with adult body size and shape: a large-scale genome-wide interaction study

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Population genetic differentiation of height and body mass index across Europe

Robinson, Matthew R., Hemani, Gibran, Medina-Gomez, Carolina, Mezzavilla, Massimo, Esko, Tonu, Shakhbazov, Konstantin, Powell, Joseph E., Vinkhuyzen, Anna, Berndt, Sonja I., Gustafsson, Stefan, Justice, Anne E., Kahali, Bratati, Locke, Adam E., Pers, Tune H., Vedantam, Sailaja, Wood, Andrew R., van Rheenen, Wouter, Andreassen, Ole A., Gasparini, Paolo, Metspalu, Andres, van den Berg, Leonard H., Veldink, Jan H., Rivadeneira, Fernando, Werge, Thomas M., Abecasis, Goncalo R., Boomsma, Dorret I., Chasman, Daniel I., de Geus, Eco J. C., Frayling, Timothy M., Hirschhorn, Joel N., Hottenga, Jouke Jan, Ingelsson, Erik, Loos, Ruth J. F., Magnusson, Patrik K. E., Martin, Nicholas G., Montgomery, Grant W., North, Kari E., Pedersen, Nancy L., Spector, Timothy D., Speliotes, Elizabeth K., Goddard, Michael E., Yang, Jian and Visscher, Peter M. (2015) Population genetic differentiation of height and body mass index across Europe. Nature Genetics, 47 11: 1357-1361. doi:10.1038/ng.3401

Genetic variance estimation with imputed variants finds negligible missing heritability for human height and body mass index

Yang, Jian, Bakshi, Andrew, Zhu, Zhihong, Hemani, Gibran, Vinkhuyzen, Anna A. E., Lee, Sang Hong, Robinson, Matthew R., Perry, John R. B., Nolte, Ilja M., van Vliet-Ostaptchouk, Jana V., Snieder, Harold, The LifeLines Cohort Study, Esko, Tonu, Milani, Lili, Maegi, Reedik, Metspalu, Andres, Hamsten, Anders, Magnusson, Patrik K. E., Pedersen, Nancy L., Ingelsson, Erik, Soranzo, Nicole, Keller, Matthew C., Wray, Naomi R., Goddard, Michael E. and Visscher, Peter M. (2015) Genetic variance estimation with imputed variants finds negligible missing heritability for human height and body mass index. Nature Genetics, 47 10: 1114-1120. doi:10.1038/ng.3390

Improving phenotypic prediction by combining genetic and epigenetic associations

Shah, Sonia, Bonder, Marc J., Marioni, Riccardo E., Zhu, Zhihong, McRae, Allan F., Zhernakova, Alexandra, Harris, Sarah E., Liewald, Dave, Henders, Anjali K., Mendelson, Michael M., Liu, Chunyu, Joehanes, Roby, Liang, Liming, Levy, Daniel, Martin, Nicholas G., Starr, John M., Wijmenga, Cisca, Wray, Naomi R., Yang, Jian, Montgomery, Grant W., Franke, Luke, Deary, Ian J., Visscher, Peter M. and BIOS Consortium (2015) Improving phenotypic prediction by combining genetic and epigenetic associations. American Journal of Human Genetics, 97 1: 75-85. doi:10.1016/j.ajhg.2015.05.014

Human fertility, molecular genetics, and natural selection in modern societies

Tropf, Felix C., Stulp, Gert, Barban, Nicola, Visscher, Peter M., Yang, Jian, Snieder, Harold and Mills, Melinda C. (2015) Human fertility, molecular genetics, and natural selection in modern societies. Plos One, 10 6: 1-14. doi:10.1371/journal.pone.0126821

Mendelian randomization study of height and risk of colorectal cancer

Thrift, Aaron P, Gong, Jian, Peters, Ulrike, Chang-Claude, Jenny, Rudolph, Anja, Slattery, Martha L, Chan, Andrew T, Esko, Tonu, Wood, Andrew R, Yang, Jian, Vedantam, Sailaja, Gustafsson, Stefan, Pers, Tune H., Baron, John A., Bezieau, Stephane, Kuery, Sebastien, Ogino, Shuji, Berndt, Sonja I, Casey, Graham, Haile, Robert W, Du, Mengmeng, Harrison, Tabitha A, Thornquist, Mark, Duggan, David J., Le Marchand, Loic, Lemire, Mathieu, Lindor, Noralane M, Seminara, Daniela, Song, Mingyang, Thibodeau, Stephen N, Cotterchio, Michelle, Win, Aung Ko, Jenkins, Mark A, Hopper, John L, Ulrich, Cornelia M, Potter, John D, Newcomb, Polly A, Schoen, Robert E, Hoffmeister, Michael, Brenner, Hermann, White, Emily, Hsu, Li and Campbell, Peter T (2015) Mendelian randomization study of height and risk of colorectal cancer. International Journal of Epidemiology, 44 2: 662-672. doi:10.1093/ije/dyv082

Mixed model with correction for case-control ascertainment increases association power

Hayeck, Tristan J., Zaitlen, Noah A., Loh, Po-Ru, Vilhjalmsson, Bjarni, Pollack, Samuela, Gusev, Alexander, Yang, Jian, Chen, Guo-Bo, Goddard, Michael E., Visscher, Peter M., Patterson, Nick and Price, Alkes L. (2015) Mixed model with correction for case-control ascertainment increases association power. American Journal of Human Genetics, 96 5: 720-730. doi:10.1016/j.ajhg.2015.03.004

Whole-genome sequence-based analysis of thyroid function

Taylor, Peter N., Porcu, Eleonora, Chew, Shelby, Campbell, Purdey J., Traglia, Michela, Brown, Suzanne J., Mullin, Benjamin H., Shihab, Hashem A., Min, Josine, Walter, Klaudia, Memari, Yasin, Huang, Jie, Barnes, Michael R., Beilby, John P., Charoen, Pimphen, Danecek, Petr, Dudbridge, Frank, Forgetta, Vincenzo, Greenwood, Celia, Grundberg, Elin, Johnson, Andrew D., Hui, Jennie, Lim, Ee M., McCarthy, Shane, Muddyman, Dawn, Panicker, Vijay, Perry, John R. B., Bell, Jordana T., Yuan, Wei, Relton, Caroline, Gaunt, Tom, Schlessinger, David, Abecasis, Goncalo, Cucca, Francesco, Surdulescu, Gabriela L., Woltersdorf, Wolfram, Zeggini, Eleftheria, Zheng, Hou-Feng, Toniolo, Daniela, Dayan, Colin M., Naitza, Silvia, Walsh, John P., Spector, Tim, Smith, George Davey, Durbin, Richard, Richards, J. Brent, Sanna, Serena, Soranzo, Nicole, Timpson, Nicholas J., Wilson, Scott G., UK10K Consortium, Evans, David, Kemp, John, Visscher, Peter M. and Yang, Jian (2015) Whole-genome sequence-based analysis of thyroid function. Nature Communications, 6 1: 5681.1-5681.10. doi:10.1038/ncomms6681

LD Score regression distinguishes confounding from polygenicity in genome-wide association studies

Bulik-Sullivan, Brendan K., Loh, Po-Ru, Finucane, Hilary K., Ripke, Stephen, Yang, Jian, Schizophrenia Working Group of the Psychiatric Genomics Consortium, Patterson, Nick, Daly, Mark J., Price, Alkes L., Neale, Benjamin M., Nertney, Deborah A., Mowry, Bryan J. and Catts, Stanley V. (2015) LD Score regression distinguishes confounding from polygenicity in genome-wide association studies. Nature Genetics, 47 3: 291-295. doi:10.1038/ng.3211

Dominance Genetic Variation Contributes Little to the Missing Heritability for Human Complex Traits

Zhu, Zhihong, Bakshi, Andrew, Vinkhuyzen, Anna A. E., Hemani, Gibran, Lee, Sang Hong, Nolte, Ilja M., vanVliet-Ostaptchouk, Jana V., Snieder, Harold, Esko, Tonu, Milani, Lili, Magi, Reedik, Metspalu, Andres, Hill, William G., Weir, Bruce S., Goddard, Michael E., Visscher, Peter M. and Yang, Jian (2015) Dominance Genetic Variation Contributes Little to the Missing Heritability for Human Complex Traits. American Journal of Human Genetics, 96 3: 377-385. doi:10.1016/j.ajhg.2015.01.001

New genetic loci link adipose and insulin biology to body fat distribution

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Childhood intelligence is heritable, highly polygenic and associated with FNBP1L

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Genetics of rheumatoid arthritis contributes to biology and drug discovery

Okada, Yukinori, Wu, Di, Trynka, Gosia, Raj, Towfique, Terao, Chikashi, Ikari, Katsunori, Kochi, Yuta, Ohmura, Koichiro, Suzuki, Akari, Yoshida, Shinji, Graham, Robert R., Manoharan, Arun, Ortmann, Ward, Bhangale, Tushar, Denny, Joshua C., Carroll, Robert J., Eyler, Anne E., Greenberg, Jeffrey D., Kremer, Joel M., Pappas, Dimitrios A., Jiang, Lei, Yin, Jian, Ye, Lingying, Su, Ding-Feng, Yang, Jian, Xie, Gang, Keystone, Ed, Westra, Harm-Jan, Esko, Tonu, Metspalu, Andreas, Zhou, Xuezhong, Gupta, Namrata, Mirel, Daniel, Stahl, Eli A., Diogo, Dorothee, Cui, Jing, Liao, Katherine, Guo, Michael H., Myouzen, Keiko, Kawaguchi, Takahisa, Coenen, Marieke J.H., van Riel, Piet L.C.M., van De Laar, Mart A.F.J., Guchelaar, Henk-Jan, Huizinga, Tom W.J., Dieude, Philippe, Mariette, Xavier, Bridges, S. Louise, Zhernakova, Alexandra, Toes, Rene E.M., Tak, Paul P., Miceli-Richard, Corinne, Bang, So-Young, Lee, Hye-Soon, Martin, Javier, Gonzalez-Gay, Miguel A., Rodriguez-Rodriguez, Luis, Rantapaa-Dahlqvist, Solbritt, Arlestig, Lisbeth, Choi, Hyon K., Kamatani, Yoichiro, Galan, Pilar, Lathrop, Mark, RACI consortium, GARNET consortium, Visscher, Peter M. and Brown, Matthew A. (2014) Genetics of rheumatoid arthritis contributes to biology and drug discovery. Nature, 506 7488: 376-381. doi:10.1038/nature12873

Novel risk loci for rheumatoid arthritis in han chinese and congruence with risk variants in europeans

Jiang, Lei, Yin, Jian, Ye, Lingying, Yang, Jian, Hemani, Gibran, Liu, Ai-Jun, Zou, Hejian, He, Dongyi, Sun, Lingyun, Zeng, Xiaofeng, Li, Zhanguo, Zheng Yi, Lin, Yiping, Liu, Yi, Fang, Yongfei, Xu, Jianhua, Li, Yinong, Dai, Shengming, Guan, Jianlong, Jiang, Lindi, Wei, Qianghua, Wang, Yi, Li, Yang, Huang, Cibo, Zuo, Xiaoxia, Liu, Yu, Wu, Xin, Zhang, Libin, Zhou, Ling, Zhang, Qing, Li, Ting, Chen, Ling, Xu, Zhen, Yang, Xiaoping, Qian, Feng, Xie, Weilin, Liu Wei, Guo, Qian, Huang, Weilin, Zhao, Jing, Li, Mengmeng, Jin, Yanhua, Gao, Jie, Lv, Yeng, Wang, Yiwen, Lin, Li, Guo, Aihua, Danoy, Patrick, Willner, Dana, Cremin, Catherine, Hadler, Johanna, Zhang, Fengchun, Zhao, Yan, Li, Mengtao, Yue, Tao, Fan, Xiaolei, Guo, Jianping, Mu, Rong, Li, Jingyi, Wu, Chao, Zeng, Ming, Wang, Jiucun, Li, Shilin, Jin, Li, Wang, Binbin, Wang, Jing, Ma, Xu, Sun, Liangdan, Zhang, Xuejun, Brown, Matthew A., Visscher, Peter M., Su, Ding-feng and Xu, Huji (2014) Novel risk loci for rheumatoid arthritis in han chinese and congruence with risk variants in europeans. Arthritis and Rheumatology, 66 5: 1121-1132. doi:10.1002/art.38353

Statistical Power to Detect Genetic (Co)Variance of Complex Traits Using SNP Data in Unrelated Samples

Visscher, Peter M., Hemani, Gibran, Vinkhuyzen, Anna A. E., Chen, Guo-Bo, Lee, Sang Hong, Wray, Naomi R., Goddard, Michael E. and Yang, Jian (2014) Statistical Power to Detect Genetic (Co)Variance of Complex Traits Using SNP Data in Unrelated Samples. PLoS Genetics, 10 4: e1004269.1-e1004269.10. doi:10.1371/journal.pgen.1004269

Inference of the Genetic Architecture Underlying BMI and Height with the Use of 20,240 Sibling Pairs

Hemani, Gibran, Yang, Jian, Vinkhuyzen, Anna, Powell, Joseph E., Willemsen, Gonneke, Hottenga, Jouke-Jan, Abdellaoui, Abdel, Mangino, Massimo, Valdes, Ana M., Medland, Sarah E., Madden, Pamela A., Heath, Andrew C., Henders, Anjali K., Nyholt, Dale R., de Geus, Eco J. C., Magnusson, Patrik K. E., Ingelsson, Erik, Montgomery, Grant W., Spector, Timothy D., Boomsma, Dorret I., Pedersen, Nancy L., Martin, Nicholas G. and Visscher, Peter M. (2013) Inference of the Genetic Architecture Underlying BMI and Height with the Use of 20,240 Sibling Pairs. American Journal of Human Genetics, 93 5: 865-875. doi:10.1016/j.ajhg.2013.10.005

Response to 'Predicting the diagnosis of autism spectrum disorder using gene pathway analysis'

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FTO gene, obesity and colon cancer: from epidemiological evidence to laboratory studies

Chen, Jiezhong, Yang, Jian and Zhao, Kong-Nan (2013) FTO gene, obesity and colon cancer: from epidemiological evidence to laboratory studies. Translational Gastrointestinal Cancer, 2 4: 194-203. doi:10.3978/j.issn.2224-4778.2013.10.02

Additive genetic variation in schizophrenia risk is shared by populations of African and European descent

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Genome-wide complex trait analysis (GCTA): Methods, data analyses, and interpretations

Yang, Jian, Lee, Sang Hong, Goddard, Michael E. and Visscher, Peter M. (2013) Genome-wide complex trait analysis (GCTA): Methods, data analyses, and interpretations. Methods in Molecular Biology, 1019 215-236. doi:10.1007/978-1-62703-447-0_9

DNA evidence for strong genome-wide pleiotropy of cognitive and learning abilities

Trzaskowski, Maciej, Davis, Oliver S. P., DeFries, John C., Yang, Jian, Visscher, Peter M. and Plomin, Robert (2013) DNA evidence for strong genome-wide pleiotropy of cognitive and learning abilities. Behavior Genetics, 43 4: 267-273. doi:10.1007/s10519-013-9594-x

Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci

Cortes, Adrian, Hadler, Johanna, Pointon, Jenny P., Robinson, Philip C., Karaderi, Tugce, Leo, Paul, Cremin, Katie, Pryce, Karena, Harris, Jessica, Lee, Seunghun, Joo, Kyung Bin, Shim, Seung-Cheol, Weisman, Michael, Ward, Michael, Zhou, Xiaodong, Garchon, Henri-Jean, Chiocchia, Gilles, Nossent, Johannes, Lie, Benedicte A., Førre, Øystein, Tuomilehto, Jaakko, Laiho, Kari, Jiang, Lei, Liu, Yu, Wu, Xin, Bradbury, Linda A., Elewaut, Dirk, Burgos-Vargas, Ruben, Stebbings, Simon, Appleton, Louise, Farrah, Claire, Lau, Jonathan, Kenna, Tony J., Haroon, Nigil, Ferreira, Manuel A., Yang, Jian, Mulero, Juan, Fernandez-Sueiro, Jose Luis, Gonzalez-Gay, Miguel A., Lopez-Larrea, Carlos, Deloukas, Panos, Donnelly, Peter, Bowness, Paul, Gafney, Karl, Gaston, Hill, Gladman, Dafna D., Rahman, Proton, Maksymowych, Walter P., Xu, Huji, Crusius, J. Bart A., van der Horst-Bruinsma, Irene E., Chou, Chung-Tei, Valle-Oñate, Raphael, Romero-Sánchez, Consuelo, Hansen, Inger Myrnes, Pimentel-Santos, Fernando M., Inman, Robert D., Videm, Vibeke, Martin, Javier, Breban, Maxime, Reveille, John D., Evans, David M., Kim, Tae-Hwan, Wordsworth, Bryan Paul, Brown, Matthew A., Australo-Anglo-American Spondyloarthritis Consortium (TASC), Groupe Française d?Etude Génétique des Spondylarthrites (GFEGS), Nord-Trøndelag Health Study (HUNT), Spondyloarthritis Research Consortium of Canada (SPARCC) and Wellcome Trust Case Control Consortium 2 (WTCCC2) (2013) Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci. Nature Genetics, 45 7: 730-740. doi:10.1038/ng.2667

Pitfalls of predicting complex traits from SNPs

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GWAS of 126,559 individuals identifies genetic variants associated with educational attainment

Rietveld, Cornelius A., Medland, Sarah E., Derringer, Jaime, Yang, Jian, Esko, Tonu, Martin, Nicolas W., Westra, Harm-Jan, Shakhbazov, Konstantin, Abdellaoui, Abdel, Agrawal, Arpana, Albrecht, Eva, Alizadeh, Behrooz Z., Amin, Najaf, Bamard, John, Baumeister, Sebastian E., Benke, Kelly S., Bielak, Lawrence F., Boatman, Jeffrey A., Boyle, Patricia A., Davies, Gail, De Leeuw, Christiaan, Eklund, Niina, Evans, Daniel S., Ferhmann, Rudolf, Fischer, Krista, Gieger, Christian, Gjessing, Hakon K., Haegg, Sara, Harris, Jennifer R., Hayward, Caroline, Holzapfel, Christina, Ibrahim-Verbaas, Carla A., Ingelsson, Erik, Jacobsson, Bo, Joshi, Peter K., Jugessur, Astanand, Kaakinen, Marika, Kanoni, Stavroula, Karjalainen, Juha, Kolcic, Ivana, Kristiansson, Kati, Kutalik, Zoltan, Lahti, Jari, Lee, Sang H., Lin, Peng, Lind, Penelope A., Liu, Yongmei, Lohman, Kurt, Loitfelder, Marisa, McMahon, George, Vidal, Pedro Marques, Meirelles, Osorio, Milani, Lili, Myhre, Ronny, Nuotio, Marja-Liisa, Oldmeadow, Christopher J., Petrovic, Katja E., Peyrot, Wouter J., Polasek, Ozren, Quaye, Lydia, Reinmaa, Eva, Rice, John P., Rizzi, Thais S., Schmidt, Helena, Schmidt, Reinhold, Smith, Albert V., Smith, Jennifer A., Tanaka, Toshiko, Terracciano, Antonio, van der Loos, Matthijs J. H. M., Vitart, Veronique, Voelzke, Henry, Wellmann, Juergen, Yu, Lei, Zhao, Wei, Allik, Jueri, Attia, John R., Bandinelli, Stefania, Bastardot, Franois, Beauchamp, Jonathan, Bennett, David A., Berger, Klaus, Bierut, Laura J., Boomsma, Dorret I., Bueltmann, Ute, Campbell, Harry, Chabris, Christopher F., Cherkas, Lynn, Chung, Mina K., Cucca, Francesco, de Andrade, Mariza, De Jager, Philip L., De Neve, Jan-Emmanuel, Deary, Ian J., Dedoussis, George V., Deloukas, Panos, Dimitriou, Maria, Eiriksdottir, Guony, Elderson, Martin F., Eriksson, Johan G., Evans, David M., Faul, Jessica D., Ferrucci, Luigi, Garcia, Melissa E., Groenberg, Henrik, Guonason, Vilmundur, Hall, Per, Harris, Juliette M., Harris, Tamara B., Hastie, Nicholas D., Heath, Andrew C., Hernandez, Dena G., Hoffmann, Wolfgang, Hofman, Adriaan, Holle, Rolf, Holliday, Elizabeth G., Hottenga, Jouke-Jan, Iacono, William G., Illig, Thomas, Jaervelin, Marjo-Riitta, Kaehoenen, Mika, Kaprio, Jaakko, Kirkpatrick, Robert M., Kowgier, Matthew, Latvala, Antti, Launer, Lenore J., Lawlor, Debbie A., Lehtimaeki, Terho, Li, Jingmei, Lichtenstein, Paul, Lichtner, Peter, Liewald, David C., Madden, Pamela A., Magnusson, Patrik K. E., Maekinen, Tomi E., Masala, Marco, McGue, Matt, Metspalu, Andres, Mielck, Andreas, Miller, Michael B., Montgomery, Grant W., Mukherjee, Sutapa, Nyholt, Dale R., Oostra, Ben A., Palmer, Lyle J., Palotie, Aarno, Penninx, Brenda W. J. H., Perola, Markus, Peyser, Patricia A., Preisig, Martin, Raeikkoenen, Katri, Raitakari, Olli T., Realo, Anu, Ring, Susan M., Ripatti, Samuli, Rivadeneira, Fernando, Rudan, Igor, Rustichini, Aldo, Salomaa, Veikko, Sarin, Antti-Pekka, Schlessinger, David, Scott, Rodney J., Snieder, Harold, St Pourcain, Beate, Starr, John M., Sul, Jae Hoon, Surakka, Ida, Svento, Rauli, Teumer, Alexander, Tiemeier, Henning, van Rooij, Frank J. A., Van Wagoner, David R., Vartiainen, Erkki, Viikari, Jorma, Vollenweider, Peter, Vonk, Judith M., Waeber, Gerard, Weir, David R., Wichmann, H. -Erich, Widen, Elisabeth, Willemsen, Gonneke, Wilson, James F., Wright, Alan F., Conley, Dalton, Davey-Smith, George, Franke, Lude, Groenen, Patrick J. F., Hofman, Albert, Johannesson, Magnus, Kardia, Sharon L. R., Krueger, Robert F., Laibson, David, Martin, Nicholas G., Meyer, Michelle N., Posthuma, Danielle, Thurik, A. Roy, Timpson, Nicholas J., Uitterlinden, Andre G., van Duijn, Cornelia M., Visscher, Peter M., Benjamin, Daniel J., Cesarini, David and Koellinger, Philipp D. (2013) GWAS of 126,559 individuals identifies genetic variants associated with educational attainment. Science, 340 6139: 1467-1471. doi:10.1126/science.1235488

Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders

den Hoed, Marcel, Eijgelsheim, Mark, Esko, Tonu, Brundel, Bianca J. J. M., Peal, David S., Evans, David M., Nolte, Ilja M., Segre, Ayellet V., Holm, Hilma, Handsaker, Robert E., Westra, Harm-Jan, Johnson, Toby, Isaacs, Aaron, Yang, Jian, Lundby, Alicia, Zhao, Jing Hua, Kim, Young Jin, Go, Min Jin, Almgren, Peter, Bochud, Murielle, Boucher, Gabrielle, Cornelis, Marilyn C., Gudbjartsson, Daniel, Hadley, David, van der Harst, Pim, Hayward, Caroline, den Heijer, Martin, Igl, Wilmar, Jackson, Anne U., Kutalik, Zoltan, Luan, Jian'an, Kemp, John P., Kristiansson, Kati, Ladenvall, Claes, Lorentzon, Mattias, Montasser, May E., Njajou, Omer T., O'Reilly, Paul F., Padmanabhan, Sandosh, Pourcain, Beate St., Rankinen, Tuomo, Salo, Perttu, Tanaka, Toshiko, Timpson, Nicholas J., Vitart, Veronique, Waite, Lindsay, Wheeler, William, Zhang, Weihua, Draisma, Harmen H. M., Feitosa, Mary F., Kerr, Kathleen F., Lind, Penelope A., Mihailov, Evelin, Onland-Moret, N. 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Ch, Metspalu, Andres, Perola, Markus, Beckmann, Jacques S., Smith, George Davey, Stefansson, Kari, Wareham, Nicholas J., Munroe, Patricia B., Sibon, Ody C. M., Milan, David J., Snieder, Harold, Samani, Nilesh J. and Loos, Ruth J. F. (2013) Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders. Nature Genetics, 45 6: 621-634. doi:10.1038/ng.2610

Sex-stratified Genome-wide Association Studies Including 270,000 Individuals Show Sexual Dimorphism in Genetic Loci for Anthropometric Traits

Randall, Joshua C., Winkler, Thomas W., Kutalik, Zoltan, Berndt, Sonja I., Jackson, Anne U., Monda, Keri L., Kilpelaeinen, Tuomas O., Esko, Tonu, Maegi, Reedik, Li, Shengxu, Workalemahu, Tsegaselassie, Feitosa, Mary F., Croteau-Chonka, Damien C., Day, Felix R., Fall, Tove, Ferreira, Teresa, Gustafsson, Stefan, Locke, Adam E., Mathieson, Iain, Scherag, Andre, Vedantam, Sailaja, Wood, Andrew R., Liang, Liming, Steinthorsdottir, Valgerdur, Thorleifsson, Gudmar, Dermitzakis, Emmanouil T., Dimas, Antigone S., Karpe, Fredrik, Min, Josine L., Nicholson, George, Clegg, Deborah J., Person, Thomas, Krohn, Jon P., Bauer, Sabrina, Buechler, Christa, Eisinger, Kristina, Bonnefond, Amelie, Froguel, Philippe, Hottenga, Jouke-Jan, Prokopenko, Inga, Waite, Lindsay L., Harris, Tamara B., Smith, Albert Vernon, Shuldiner, Alan R., McArdle, Wendy L., Caulfield, Mark J., Munroe, Patricia B., Gronberg, Henrik, Chen, Yii-Der Ida, Li, Guo, Beckmann, Jacques S., Johnson, Toby, Thorsteinsdottir, Unnur, Teder-Laving, Maris, Khaw, Kay-Tee, Wareham, Nicholas J., Zhao, Jing Hua, Amin, Najaf, Oostra, Ben A., Kraja, Aldi T., Province, Michael A., Cupples, L. Adrienne, Heard-Costa, Nancy L., Kaprio, Jaakko, Ripatti, Samuli, Surakka, Ida, Collins, Francis S., Saramies, Jouko, Tuomilehto, Jaakko, Jula, Antti, Salomaa, Veikko, Erdmann, Jeanette, Hengstenberg, Christian, Loley, Christina, Schunkert, Heribert, Lamina, Claudia, Wichmann, H. Erich, Albrecht, Eva, Gieger, Christian, Hicks, Andrew A., Johansson, Asa, Pramstaller, Peter P., Kathiresan, Sekar, Speliotes, Elizabeth K., Penninx, Brenda, Hartikainen, Anna-Liisa, Jarvelin, Marjo-Riitta, Gyllensten, Ulf, Boomsma, Dorret I., Campbell, Harry, Wilson, James F., Chanock, Stephen J., Farrall, Martin, Goel, Anuj, Medina-Gomez, Carolina, Rivadeneira, Fernando, Estrada, Karol, Uitterlinden, Andre G., Hofman, Albert, Zillikens, M. Carola, den Heijer, Martin, Kiemeney, Lambertus A., Maschio, Andrea, Hall, Per, Tyrer, Jonathan, Teumer, Alexander, Voelzke, Henry, Kovacs, Peter, Toenjes, Anke, Mangino, Massimo, Spector, Tim D., Hayward, Caroline, Rudan, Igor, Hall, Alistair S., Samani, Nilesh J., Attwood, Antony Paul, Sambrook, Jennifer G., Hung, Joseph, Palmer, Lyle J., Lokki, Marja-Liisa, Sinisalo, Juha, Boucher, Gabrielle, Huikuri, Heikki, Lorentzon, Mattias, Ohlsson, Claes, Eklund, Niina, Eriksson, Johan G., Barlassina, Cristina, Rivolta, Carlo, Nolte, Ilja M., Snieder, Harold, Van der Klauw, Melanie M., Van Vliet-Ostaptchouk, Jana V., Gejman, Pablo V., Shi, Jianxin, Jacobs, Kevin B., Wang, Zhaoming, Bakker, Stephan J. 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Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture

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Ubiquitous polygenicity of human complex traits: genome-wide analysis of 49 traits in Koreans

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Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus

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Estimation of SNP heritability from dense genotype data

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Partitioning the Heritability of Tourette Syndrome and Obsessive Compulsive Disorder Reveals Differences in Genetic Architecture

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Seventy-five genetic loci influencing the human red blood cell

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Estimation of pleiotropy between complex diseases using single-nucleotide polymorphism-derived genomic relationships and restricted maximum likelihood

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FTO genotype is associated with phenotypic variability of body mass index

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Evidence of inbreeding depression on human height

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Statistical method for mapping QTLs for complex traits based on two backcross populations

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Estimating the proportion of variation in susceptibility to schizophrenia captured by common SNPs (vol 44, pg 247, 2012)

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Common SNPs explain some of the variation in the personality dimensions of neuroticism and extraversion (vol 2, e125, 2012)

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Common SNPs explain some of the variation in the personality dimensions of neuroticism and extraversion

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Conditional and joint multiple-SNP analysis of GWAS summary statistics identifies additional variants influencing complex traits

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Estimating the proportion of variation in susceptibility to schizophrenia captured by common SNPs

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Genetic contributions to stability and change in intelligence from childhood to old age

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Five years of GWAS discovery

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Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution

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Genome-wide association studies establish that human intelligence is highly heritable and polygenic

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Response to Browning and Browning

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Genomic inflation factors under polygenic inheritance

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Genome partitioning of genetic variation for complex traits using common SNPs

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GCTA: a tool for genome-wide complex trait analysis

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A Commentary on 'Common SNPs Explain a Large Proportion of the Heritability for Human Height' by Yang et al. (2010)

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Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index

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Boerwinkle, Dorret I Boomsma, Mark J Caulfield, Stephen J Chanock, Francis S Collins, L Adreienne Cupples, George Davey Smith, Jeanette Erdmann, Philippe Froguel, Henrik Gronberg, Ulf Gyllensten, Per Hall, Torben Hansen, Tamara B Harris, Andrew T Hattersley, Richard B Hayes, Joachim Heinrich, Frank B Hu, Kristian Hveem, Thomas Illig, Marjo-Riitta Jarvelin, Jaakko Kaprio, Fredrik Karpe, Kay-Tee Khaw, Lambertus A Kiemeney, Heiko Krude, Markku Laakso, Debbie A Lawlor, Andres Metspalu, Patricia B Munroe, Willem H Ouwehand, Oluf Pedersen, Brenda W Penninx, Annette Peters, Peter P Pramstaller, Thomas Quertermous, Thomas Reinehr, Aila Rissanen, Igor Rudan, Nilesh J Samani, Peter E H Schwarz, Alan R Shuldiner, Timothy D Spector, Jaakko Tuomilehto, Manuela Uda, Andre Uitterlinden, Timo T Valle, Martin Wabitsch, Gerard Waeber, Nicholas J Wareham, Hugh Watkins, James F Wilson, Alan F Wright, M Carola Zillikens, Nilanjan Chatterjee, Steven A McCarroll, Shaun Purcell, Eric E Schadt, Visscher, Peter M., Themistocles L Assimes, Ingrid B Borecki, Panos Deloukas, Caroline S Fox, Leif C Groop, Talin Haritunians, David J Hunter, Robert C Kaplan, Karen L Mohlke, Jeffrey R O'Connell, Leena Peltonen, David Schlessinger, David P Strachan, Cornelia M van Duijn, H-Erich Wichmann, Timothy M Frayling, Unnur Thorsteinsdottir, Goncalo R Abecasis, Ines Barroso, Michael Boehnke, Kari Stefansson, Kari E North, Mark I McCarthy, Joel N Hirschhorn, Erik Ingelsson and Ruth J F Loos (2010) Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index. 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Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution

Heid, Iris M., Jackson, Anne U., Randall, Joshua C., Winkler, Thomas W., Qi, Lu, Steinthorsdottir, Valgerdur, Thorleifsson, Gudmar, Zillikens, M. 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B., Peters, Marjolein J., Polasek, Ozren, Prokopenko, Inga, Rayner, Nigel W., Ripatti, Samuli, Rivadeneira, Fernando, Robertson, Neil R., Sanna, Serena, Sovio, Ulla, Surakka, Ida, Teumer, Alexander, van Wingerden, Sophie, Vitart, Veronique, Zhao, Jing Hua, Cavalcanti-Proenca, Christine, Chines, Peter S., Fisher, Eva, Kulzer, Jennifer R., Lecoeur, Cecile, Narisu, Narisu, Sandholt, Camilla, Scott, Laura J., Silander, Kaisa, Stark, Klaus, Tammesoo, Mari-Liis, Teslovich, Tanya M., Timpson, Nicholas John, Watanabe, Richard M., Welch, Ryan, Chasman, Daniel I., Cooper, Matthew N., Jansson, John-Olov, Kettunen, Johannes, Lawrence, Robert W., Pellikka, Niina, Perola, Markus, Vandenput, Liesbeth, Alavere, Helene, Almgren, Peter, Atwood, Larry D., Bennett, Amanda J., Biffar, Reiner, Bonnycastle, Lori L., Bornstein, Stefan R., Buchanan, Thomas A., Campbell, Harry, Day, Ian N. M., Dei, Mariano, Doerr, Marcus, Elliott, Paul, Erdos, Michael R., Eriksson, Johan G., Freimer, Nelson B., Fu, Mao, Gaget, Stefan, Geus, Eco J. C., Gjesing, Anette P., Grallert, Harald, Graessler, Juergen, Groves, Christopher J., Guiducci, Candace, Hartikainen, Anna-Liisa, Hassanali, Neelam, Havulinna, Aki S., Herzig, Karl-Heinz, Hicks, Andrew A., Hui, Jennie, Igl, Wilmar, Jousilahti, Pekka, Jula, Antti, Kajantie, Eero, Kinnunen, Leena, Kolcic, Ivana, Koskinen, Seppo, Kovacs, Peter, Kroemer, Heyo K., Krzelj, Vjekoslav, Kuusisto, Johanna, Kvaloy, Kirsti, Laitinen, Jaana, Lantieri, Olivier, Lathrop, G. Mark, Lokki, Marja-Liisa, Luben, Robert N., Ludwig, Barbara, McArdle, Wendy L., McCarthy, Anne, Morken, Mario A., Nelis, Mari, Neville, Matt J., Pare, Guillaume, Parker, Alex N., Peden, John F., Pichler, Irene, Pietilainen, Kirsi H., Platou, Carl G. P., Pouta, Anneli, Ridderstrale, Martin, Samani, Nilesh J., Saramies, Jouko, Sinisalo, Juha, Smit, Jan H., Strawbridge, Rona J., Stringham, Heather M., Swift, Amy J., Teder-Laving, Maris, Thomson, Brian, Usala, Gianluca, van Meurs, Joyce B. J., van Ommen, Gert-Jan, Vatin, Vincent, Volpato, Claudia B., Wallaschofski, Henri, Walters, G. Bragi, Widen, Elisabeth, Wild, Sarah H., Willemsen, Gonneke, Witte, Daniel R., Zgaga, Lina, Zitting, Paavo, Beilby, John P., James, Alan L., Kahonen, Mika, Lehtimaki, Terho, Nieminen, Markku S., Ohlsson, Claes, Palmer, Lyle J., Raitakari, Olli, Ridker, Paul M., Stumvoll, Michael, Toenjes, Anke, Viikari, Jorma, Balkau, Beverley, Ben-Shlomo, Yoav, Bergman, Richard N., Boeing, Heiner, Smith, George Davey, Ebrahim, Shah, Froguel, Philippe, Hansen, Torben, Hengstenberg, Christian, Hveem, Kristian, Isomaa, Bo, Jorgensen, Torben, Karpe, Fredrik, Khaw, Kay-Tee, Laakso, Markku, Lawlor, Debbie A., Marre, Michel, Meitinger, Thomas, Metspalu, Andres, Midthjell, Kristian, Pedersen, Oluf, Salomaa, Veikko, Schwarz, Peter E. 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Linda, Kaprio, Jaakko, Launer, Lenore J., Munroe, Patricia B., Oostra, Ben, Penninx, Brenda W., Pramstaller, Peter P., Psaty, Bruce M., Quertermous, Thomas, Rissanen, Aila, Rudan, Igor, Shuldiner, Alan R., Soranzo, Nicole, Spector, Timothy D., Syvanen, Ann-Christine, Uda, Manuela, Uitterlinden, Andre, Voelzke, Henry, Vollenweider, Peter, Wilson, James F., Witteman, Jacqueline C., Wright, Alan F., Abecasis, Goncalo R., Boehnke, Michael, Borecki, Ingrid B., Deloukas, Panos, Frayling, Timothy M., Groop, Leif C., Haritunians, Talin, Hunter, David J., Kaplan, Robert C., North, Kari E., O'Connell, Jeffrey R., Peltonen, Leena, Schlessinger, David, Strachan, David P., Hirschhorn, Joel N., Assimes, Themistocles L., Wichmann, H-Erich, Thorsteinsdottir, Unnur, van Duijn, Cornelia M., Stefansson, Kari, Cupples, L. Adrienne, Loos, Ruth J. F., Barroso, Ines, McCarthy, Mark I., Fox, Caroline S., Mohlke, Karen L. and Lindgren, Cecilia M. (2010) Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution. Nature Genetics, 42 11: 949-962. doi:10.1038/ng.685

From Galton to GWAS: Quantitative genetics of human height

Visscher, Peter M., McEvoy, Brian and Yang, Jian (2010) From Galton to GWAS: Quantitative genetics of human height. Genetics Research, 92 5-6: 371-379. doi:10.1017/S0016672310000571

Corrigendum to: Sporadic cases are the norm for complex disease (European Journal of Human Genetics (2010) 18 (1039-1043) DOI: 10.1038/ejhg.2009.177)

Yang, Jian, Visscher, Peter M. and Wray, Naomi R. (2010) Corrigendum to: Sporadic cases are the norm for complex disease (European Journal of Human Genetics (2010) 18 (1039-1043) DOI: 10.1038/ejhg.2009.177). European Journal of Human Genetics, 18 9: 1044-1044. doi:10.1038/ejhg.2009.233

Sporadic cases are the norm for complex disease

Yang, Jian, Visscher, Peter M. and Wray, Naomi R. (2010) Sporadic cases are the norm for complex disease. European Journal of Human Genetics, 18 9: 1039-1043. doi:10.1038/ejhg.2009.177

Common SNPs explain a large proportion of the heritability for human height

Yang, Jian, Benyamin, Beben, McEvoy, Brian P., Gordon, Scott, Henders, Anjali K., Nyholt, Dale R., Madden, Pamela A., Heath, Andrew C., Martin, Nicholas G., Montgomery, Grant W., Goddard, Michael E. and Visscher, Peter M. (2010) Common SNPs explain a large proportion of the heritability for human height. Nature Genetics, 42 7: 565-569. doi:10.1038/ng.608

QTLNetworkR: an interactive R package for QTL visualization

Zheng, Wen-jun, Yang, Jian and Zhu, Jun (2010) QTLNetworkR: an interactive R package for QTL visualization. Journal of Zhejiang University-Science B, 11 7: 512-515. doi:10.1631/jzus.B0900384

Comparing apples and oranges: Equating the power of case-control and quantitative trait association studies

Yang, Jian, Wray, Naomi R. and Visscher, Peter M. (2010) Comparing apples and oranges: Equating the power of case-control and quantitative trait association studies. Genetic Epidemiology, 34 3: 254-257. doi:10.1002/gepi.20456

The Genetic Interpretation of Area under the ROC Curve in Genomic Profiling

Wray, Naomi R., Yang, Jian, Goddard, Michael E. and Visscher, Peter M. (2010) The Genetic Interpretation of Area under the ROC Curve in Genomic Profiling. PLoS Genetics, 6 2: e1000864.1-e1000864.9. doi:10.1371/journal.pgen.1000864

Uncovering genetic regulatory network divergence between duplicate genes using yeast eQTL landscape

Zou, Yangyun, Su, Zhixi, Yang, Jian, Zeng, Yanwu and Gu, Xun (2009) Uncovering genetic regulatory network divergence between duplicate genes using yeast eQTL landscape. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 312B 7: 722-733. doi:10.1002/jez.b.21290

Identifying differentially expressed genes in human acute leukemia and mouse brain microarray datasets utilizing QTModel

Yang, Jian, Zou, Yangyun and Zhu, Jun (2009) Identifying differentially expressed genes in human acute leukemia and mouse brain microarray datasets utilizing QTModel. Functional & Integrative Genomics, 9 1: 59-66. doi:10.1007/s10142-008-0096-5

Influence of outliers on QTL mapping for complex traits

Hayat, Yousaf, Yang, Jian, Xu, Hai-ming and Zhu, Jun (2008) Influence of outliers on QTL mapping for complex traits. Journal of Zhejiang University-Science B, 9 12: 931-937. doi:10.1631/jzus.B0820045

Mapping interspecific genetic architecture in a host-parasite interaction system

Yang, Jian, Wu, Weiren and Zhu, Jun (2008) Mapping interspecific genetic architecture in a host-parasite interaction system. Genetics, 178 3: 1737-1743. doi:doi:10.1534/genetics.107.081430

QTLNetwork: mapping and visualizing genetic architecture of complex traits in experimental populations

Yang, Jian, Hu, Chengcheng, Hu, Han, Yu, Rongdong, Xia, Zhen, Ye, Xiuzi and Zhu, Jun (2008) QTLNetwork: mapping and visualizing genetic architecture of complex traits in experimental populations. Bioinformatics, 24 5: 721-723. doi:10.1093/bioinformatics/btm494

Genetic analysis of grain yield conditioned on its component traits in rice (Oryza sativa L.)

Liu, G. F., Yang, J., Xu, H. M., Hayat, Y. and Zhu, J. (2008) Genetic analysis of grain yield conditioned on its component traits in rice (Oryza sativa L.). Australian Journal of Agricultural Research, 59 2: 189-195. doi:10.1071/AR07163

Influence of Epistasis and QTL × Environment Interaction on Heading Date of Rice (Oryza sativa L.)

Liu, Guifu, Yang, Jian, Xu, Haiming and Zhu, Jun (2007) Influence of Epistasis and QTL × Environment Interaction on Heading Date of Rice (Oryza sativa L.). Journal of Genetics and Genomics, 34 7: 608-615. doi:10.1016/S1673-8527(07)60069-1

Analysis of Genetic Effects of Nuclear-Cytoplasmic Interaction on Quantitative Traits: Genetic Model for Diploid Plants

Han, Lide, Yang, Jian and Zhu, Jun (2007) Analysis of Genetic Effects of Nuclear-Cytoplasmic Interaction on Quantitative Traits: Genetic Model for Diploid Plants. Journal of Genetics and Genomics, 34 6: 562-568. doi:10.1016/S1673-8527(07)60062-9

Mapping the genetic architecture of complex traits in experimental populations

Yang, Jian, Zhu, Jun and Williams, Robert W. (2007) Mapping the genetic architecture of complex traits in experimental populations. Bioinformatics, 23 12: 1527-1536. doi:10.1093/bioinformatics/btm143

3D graphical visualization of the genetic architectures underlying complex traits in multiple environments

Hu Cheng-cheng, Ye Xiu-zi, Zhang Yin, Yu Rong-dong, Yang Jian and Zhu Jun (2007) 3D graphical visualization of the genetic architectures underlying complex traits in multiple environments. Journal of Zhejiang University-Science a, 8 4: 563-567. doi:10.1631/jzus.2007.A0563

Genetic analysis on tiller number and plant height per plant in rice (Oryza sativa L.)

Liu, Gui-Fu, Xu, Hai-Ming, Yang, Jian and Zhu, Jun (2006) Genetic analysis on tiller number and plant height per plant in rice (Oryza sativa L.). Zhejiang Daxue Xuebao (Nongye yu Shengming Kexue Ban)/Journal of the Zhejiang University - Agriculture and Life Science, 32 5: 527-534.

Mapping QTL for Biomass Yield and Its Components in Rice (Oryza sativa L.)

LIU, Gui-Fu, YANG, Jian and ZHU, Jun (2006) Mapping QTL for Biomass Yield and Its Components in Rice (Oryza sativa L.). Acta Genetica Sinica, 33 7: 607-616. doi:10.1016/S0379-4172(06)60090-5

Methods for predicting superior genotypes under multiple environments based on QTL effects

Yang, J and Zhu, J (2005) Methods for predicting superior genotypes under multiple environments based on QTL effects. Theoretical and Applied Genetics, 110 7: 1268-1274. doi:10.1007/s00122-005-1963-2

Effects of assortative mating on estimates of SNP heritability

Keller, Matthew, de Candia, Teresa, Jones, Matt, Tahmasbi, Rasool, Evans, Luke, Evans, David, Eaves, Lindon, Yang, Jian, Visscher, Peter and Goddard, Mike (2019). Effects of assortative mating on estimates of SNP heritability. In: 25th World Congress of Psychiatric Genetics (WCPG), Orlando, FL, United States, (S788-S789). 13-17 October 2017. doi:10.1016/j.euroneuro.2017.08.016

Identifying Target Genes for Endometriosis through Integration of Genetic Effects on Transcription and Methylation in Human Endometrium

Mortlock, Sally, Fung, Jenny N., Girling, Jane E., Holdsworth-Carson, Sarah J., Healey, Martin, Lukowski, Samuel W., McKinnon, Brett D., Yang, Jian, McRae, Allan, Rogers, Peter A. W. and Montgomery, Grant W. (2019). Identifying Target Genes for Endometriosis through Integration of Genetic Effects on Transcription and Methylation in Human Endometrium. In: 66th Annual Scientific Meeting of the Society for Reproductive Investigation (SRI), Paris, France, (311A-312A). 12-16 March 2019.

Inter-individual cortical and subcortical similarity is associated with differences in psychiatric, cognition and socio-economic traits

Couvy-Duchesne, Baptiste, Strike, Lachlan, Zhang, Futao, Wray, Naomi, Wright, Margaret, Visscher, Peter and Yang, Jian (2019). Inter-individual cortical and subcortical similarity is associated with differences in psychiatric, cognition and socio-economic traits. In: 25th World Congress of Psychiatric Genetics (WCPG), Orlando, FL, United States, (S859-S859). 13-17 October 2017. doi:10.1016/j.euroneuro.2017.08.140

VALIDATING GWA ASSOCIATIONS IN PSYCHIATRIC DISORDERS WITH FUNCTIONAL GENOMIC DATA

Trzaskowski, Maciej, Byrne, Enda, Yang, Jian and Wray, Naomi (2019). VALIDATING GWA ASSOCIATIONS IN PSYCHIATRIC DISORDERS WITH FUNCTIONAL GENOMIC DATA. In: 25th World Congress of Psychiatric Genetics (WCPG), Orlando Fl, (S790-S791). Oct 13-17, 2017. doi:10.1016/j.euroneuro.2017.08.019

Association between population density and genetic risk for schizophrenia

Colodro-Conde, Lucía, Couvy-Duchesne, Baptiste, Whitfield, John B., Streit, Fabian, Gordon, Scott, Kemper, Kathryn E., Yengo, Loic, Zheng, Zhili, Trzaskowski, Maciej, de Zeeuw, Eveline L., Nivard, Michel G., Das, Marjolijn, Neale, Rachel E., MacGregor, Stuart, Olsen, Catherine M., Whiteman, David C., Boomsma, Dorret I., Yang, Jian, Rietschel, Marcella, McGrath, John J., Medland, Sarah E. and Martin, Nicholas G. (2018) Association between population density and genetic risk for schizophrenia. JAMA Psychiatry, 75 9: 901-910. doi:10.1001/jamapsychiatry.2018.1581

Higher genetic risk for schizophrenia is associated with living in more densely populated areas

Conde, Lucia Colodro, Couvy-Duchesne, Baptiste, Whitfield, John, Streit, Fabian, Yengo, Loic, Trzaskowski, Maciej, De Zeeuw, Eveline, Nivard, Michel, Whiteman, David, Boomsma, Dorret, Yang, Jian, Rietschel, Marcella, Mcgrath, John, Medland, Sarah and Martin, Nick (2018). Higher genetic risk for schizophrenia is associated with living in more densely populated areas. In: 48th Annual Meeting of the Behavior Genetics Association (BGA), Boston, MA United States, (462-463). 20-23 June 2018.

Invited abstract: Leveraging big GWAS data to address question about selection, pleiotropy, assortative mating and epidemiology

Visscher, Peter M., Wray, Naomi R. and Yang, Jian (2018). Invited abstract: Leveraging big GWAS data to address question about selection, pleiotropy, assortative mating and epidemiology. In: 27th Annual Meeting of the International Genetic Epidemiology Society (IGES), San Diego, CA, United States, (737-737). 14-16 October 2018.

Signatures of negative selection in the genetic architecture of human complex traits

Zeng, Jian, de Vlaming, Ronald, Wu, Yang, Robinson, Matthew R., Lloyd-Jones, Luke R., Yengo, Loic, Yap, Chloe X., Xue, Angli, Sidorenko, Julia, Mcrae, Allan F., Powell, Joseph E., Montgomery, Grant W., Metspalu, Andres, Esko, Tonu, Gibson, Greg, Wray, Naomi R., Visscher, Peter M. and Yang, Jian (2018). Signatures of negative selection in the genetic architecture of human complex traits. In: 48th Annual Meeting of the Behavior-Genetics-Association (BGA), Boston MA, United States, (525-525). 20-23 June 2018.

Evidence for genetic overlap between schizophrenia and maternal age at first birth

Mehta, Divya, Tropf, Felix, Gratten, Jacob, Bacanu, Silviu, Bakshi, Andrew, Mowry, Bryan, Kendler, Kenneth, Yang, Jian, Visscher, Peter, McGrath, John, Mills, Melinda, Wray, Naomi and Lee, Sang Hong (2017). Evidence for genetic overlap between schizophrenia and maternal age at first birth. In: 23rd Annual World Congress of Psychiatric Genetics (WCPG), Toronto, ON, Canada, (S255-S256). 16-20 October 2015. doi:10.1016/j.euroneuro.2015.09.010

Meta-analysis of Genetic Associations in up to 339,224 Individuals Identify 66 New Loci for Bmi, Confirming a Neuronal Contribution to Body Weight Regulation and Implicating Several Novel Pathways

Justice, Anne, North, Kari, Loos, Ruth, Vedantam, Sailaja, Day, Felix, Berndt, Sonja, Gustafsson, Stefan, Locke, Adam, Powell, Corey, Bratati, Kahali, Croteau-Chonka, Damien, Winkler, Thomas, Scherag, Andre, Barroso, Ines, Beckmann, Jacqui, Lindgren, Cecilia, Pers, Tune, Visscher, Peter, Willer, Cristen, Yang, Jian, Mohlke, Karen, Hirschorn, Joel, Ingelsson, Erik, Boehnke, Michael and Speliotes, Elizabeth (2013). Meta-analysis of Genetic Associations in up to 339,224 Individuals Identify 66 New Loci for Bmi, Confirming a Neuronal Contribution to Body Weight Regulation and Implicating Several Novel Pathways. In: Abstracts From the American Heart Association's Epidemiology and Prevention/Physical Activity, Nutrition and Metabolism 2013 Scientific Sessions. Scientific Sessions of the American-Heart-Association on Epidemiology and Prevention/Physical Activity, Nutrition and Metabolism, New Orleans La, (). 19 - 22 March 2013.

Additive genetic variation in risk to schizophrenia across African American and European American populations

de Candia, Teresa, Lee, Hong, Yang, Jian, Browning, Brian, Gejman, Pablo, Levinson, Douglas, Hewitt, John, Visscher, Peter, Wray, Naomi and Keller, Matthew (2012). Additive genetic variation in risk to schizophrenia across African American and European American populations. In: Behavior Genetics. 42nd Annual Meeting of the Behavior-Genetics-Association, Edinburgh Scotland, (928-928). Jun 22-25, 2012.

Single-chip RF CMOS UMTS/EGSM transceiver with integrated receive diversity and GPS

Hadjichristos, A., Cassia, M., Kim, H., Park, C. H., Wang, K., Zhuo, W., Ahrari, B., Brockenbrough, R., Chen, J., Donovan, C., Jonnalagedda, R., Kim, J., Ko, J., Lee, H., Lee, S., Lei, E., Nguyen, T., Pan, T., Sridhara, S., Su, W., Yan, H., Yang, J., Conroy, C., Persico, C., Sahota, K. and Kim, B. (2009). Single-chip RF CMOS UMTS/EGSM transceiver with integrated receive diversity and GPS. In: 2009 IEEE International Solid-State Circuits Conference - Digest of Technical Papers, ISSCC 2009. 2009 IEEE International Solid-State Circuits Conference ISSCC 2009, , , (). February 8, 2009-February 12, 2009. doi:10.1109/ISSCC.2009.4977336

UK Biobank GWAS results

Yang, Jian, Zheng, Zhili and Jiang, Longda (2019): UK Biobank GWAS results. Dataset. doi:10.14264/uql.2019.231