The University of Queensland

Terahertz <i>in vivo</i> imaging of human skin: Toward detection of abnormal skin pathologies

Qi, X., Bertling, K., Torniainen, J., Kong, F., Gillespie, T., Primiero, C., Stark, M. S., Dean, P., Indjin, D., Li, L. H., Linfield, E. H., Davies, A. G., Brünig, M., Mills, T., Rosendahl, C., Soyer, H. P. and Rakić, A. D. (2024). Terahertz in vivo imaging of human skin: Toward detection of abnormal skin pathologies. APL Bioengineering, 8 (1) 016117. doi: 10.1063/5.0190573

Refractive index of human articular cartilage varies with tissue structure and composition

Khan, Bilour, Nippolainen, Ervin, SHAHINI, FATEMEH, Torniainen, Jari, MIKKONEN, SANTTU, NONAPPA, NONAPPA, Popov, Alexey, Töyräs, Juha and Afara, Isaac (2023). Refractive index of human articular cartilage varies with tissue structure and composition. Journal of the Optical Society of America A, 40 (12), 2205-2214. doi: 10.1364/josaa.498722

Coherent Terahertz laser feedback interferometry for hydration sensing in leaves

Kashyap, Mayuri, Torniainen, Jari, Bertling, Karl, Kundu, Urbi, Singh, Khushboo, Donose, Bogdan, Gillespie, Tim, Lim, Yah Leng, Indjin, Dragan, Li, Lian He, Linfield, Edmund, Davies, Giles, Dean, Paul, Smith, Millicent, Chapman, Scott, Bandyopadhyay, Aparajita, Sengupta, Amartya and Rakic, Aleksandar (2023). Coherent Terahertz laser feedback interferometry for hydration sensing in leaves. Optics Express, 31 (15), 23877-23888. doi: 10.1364/oe.490217

Nondestructive evaluation of mechanical and histological properties of the human aorta with near-infrared spectroscopy

Sarin, Jaakko K., Kiema, Miika, Luoto, Emma-Sofia, Husso, Annastiina, Hedman, Marja, Laakkonen, Johanna P. and Torniainen, Jari (2023). Nondestructive evaluation of mechanical and histological properties of the human aorta with near-infrared spectroscopy. Journal of Surgical Research, 287, 82-89. doi: 10.1016/j.jss.2023.01.016

Terahertz imaging of human skin pathologies using laser feedback interferometry with quantum cascade lasers

Qi, Xiaoqiong, Bertling, Karl, Stark, Mitchell S., Taimre, Thomas, Kao, Yung-Ching, Lim, Yah Leng, Han, She, O'Brien, Blake, Collins, Angus, Walsh, Michael, Torniainen, Jari, Gillespie, Timothy, Donose, Bogdan C., Dean, Paul, Li, Lian He, Linfield, Edmund H., Davies, A. Giles, Indjin, Dragan, Soyer, H. Peter and Rakic, Aleksandar D. (2023). Terahertz imaging of human skin pathologies using laser feedback interferometry with quantum cascade lasers. Biomedical Optics Express, 14 (4), 1393-1410. doi: 10.1364/boe.480615

Assessment of Ligament Viscoelastic Properties Using Raman Spectroscopy

Cui, Andy, Nippolainen, Ervin, Shaikh, Rubina, Torniainen, Jari, Ristaniemi, Aapo, Finnilä, Mikko, Korhonen, Rami K., Saarakkala, Simo, Herzog, Walter, Töyräs, Juha and Afara, Isaac O. (2022). Assessment of Ligament Viscoelastic Properties Using Raman Spectroscopy. Annals of Biomedical Engineering, 50 (9), 1134-1142. doi: 10.1007/s10439-022-02988-z

Wall shear stress predicts media degeneration and biomechanical changes in thoracic aorta

Kiema, Miika, Sarin, Jaakko K., Kauhanen, S. Petteri, Torniainen, Jari, Matikka, Hanna, Luoto, Emma-Sofia, Jaakkola, Pekka, Saari, Petri, Liimatainen, Timo, Vanninen, Ritva, Ylä-Herttuala, Seppo, Hedman, Marja and Laakkonen, Johanna P. (2022). Wall shear stress predicts media degeneration and biomechanical changes in thoracic aorta. Frontiers in Physiology, 13 934941. doi: 10.3389/fphys.2022.934941

Near infrared spectroscopic evaluation of biochemical and crimp properties of knee joint ligaments and patellar tendon

Torniainen, Jari, Ristaniemi, Aapo, Sarin, Jaakko K., Prakash, Mithilesh, Afara, Isaac O., Finnilä, Mikko A.J., Stenroth, Lauri, Korhonen, Rami K. and Töyräs, Juha (2022). Near infrared spectroscopic evaluation of biochemical and crimp properties of knee joint ligaments and patellar tendon. PLoS ONE, 17 (2) e0263280, e0263280. doi: 10.1371/journal.pone.0263280

Near-Infrared Spectroscopy Enables Arthroscopic Histologic Grading of Human Knee Articular Cartilage

Sarin, Jaakko K., Prakash, Mithilesh, Shaikh, Rubina, Torniainen, Jari, Joukainen, Antti, Kröger, Heikki, Afara, Isaac O. and Töyräs, Juha (2022). Near-Infrared Spectroscopy Enables Arthroscopic Histologic Grading of Human Knee Articular Cartilage. Arthroscopy, Sports Medicine, and Rehabilitation, 4 (5), e1767-e1775. doi: 10.1016/j.asmr.2022.07.002

Biomechanical, biochemical, and near infrared spectral data of bovine knee ligaments and patellar tendon

Ristaniemi, Aapo, Torniainen, Jari, Paakkonen, Tommi, Stenroth, Lauri, Finnilä, Mikko A. J., Tanska, Petri, Töyräs, Juha and Korhonen, Rami K. (2021). Biomechanical, biochemical, and near infrared spectral data of bovine knee ligaments and patellar tendon. Data in brief, 36 106976, 106976. doi: 10.1016/j.dib.2021.106976

Raman spectroscopy is sensitive to biochemical changes related to various cartilage injuries

Shaikh, Rubina, Nippolainen, Ervin, Virtanen, Vesa, Torniainen, Jari, Rieppo, Lassi, Saarakkala, Simo, Afara, Isaac O. and Töyräs, Juha (2021). Raman spectroscopy is sensitive to biochemical changes related to various cartilage injuries. Journal of Raman Spectroscopy, 52 (4) jrs.6062, 796-804. doi: 10.1002/jrs.6062

Characterization of connective tissues using near-infrared spectroscopy and imaging

Afara, Isaac O., Shaikh, Rubina, Nippolainen, Ervin, Querido, William, Torniainen, Jari, Sarin, Jaakko K., Kandel, Shital, Pleshko, Nancy and Töyräs, Juha (2021). Characterization of connective tissues using near-infrared spectroscopy and imaging. Nature Protocols, 16 (2), 1297-1329. doi: 10.1038/s41596-020-00468-z

Structure, composition and fibril-reinforced poroviscoelastic properties of bovine knee ligaments and patellar tendon

Ristaniemi, Aapo, Regmi, Dristi, Mondal, Diponkor, Torniainen, Jari, Tanska, Petri, Stenroth, Lauri, Finnilä, Mikko A. J., Töyräs, Juha and Korhonen, Rami K. (2021). Structure, composition and fibril-reinforced poroviscoelastic properties of bovine knee ligaments and patellar tendon. Journal of the Royal Society. Interface, 18 (174) 20200737, 1-11. doi: 10.1098/rsif.2020.0737

Machine learning augmented near-infrared spectroscopy: in vivo follow-up of cartilage defects

Sarin, J. K., Te Moller, N. C. R., Mohammadi, A., Prakash, M., Torniainen, J., Brommer, H., Nippolainen, E., Shaikh, R., Mäkelä, J. T. A., Korhonen, R. K., van Weeren, P. R., Afara, I. O. and Töyräs, J. (2020). Machine learning augmented near-infrared spectroscopy: in vivo follow-up of cartilage defects. Osteoarthritis and Cartilage, 29 (3), 423-432. doi: 10.1016/j.joca.2020.12.007

Open-source python module for automated preprocessing of near infrared spectroscopic data

Torniainen, Jari, Afara, Isaac O., Prakash, Mithilesh, Sarin, Jaakko K., Stenroth, Lauri and Töyräs, Juha (2020). Open-source python module for automated preprocessing of near infrared spectroscopic data. Analytica Chimica Acta, 1108, 1-9. doi: 10.1016/j.aca.2020.02.030

Comparison of water, hydroxyproline, uronic acid and elastin contents of bovine knee ligaments and patellar tendon and their relationships with biomechanical properties

Ristaniemi, A., Torniainen, J., Stenroth, L., Finnilä, M. A.J., Paakkonen, T., Töyräs, J. and Korhonen, R. K. (2020). Comparison of water, hydroxyproline, uronic acid and elastin contents of bovine knee ligaments and patellar tendon and their relationships with biomechanical properties. Journal of the Mechanical Behavior of Biomedical Materials, 104 103639, 103639. doi: 10.1016/j.jmbbm.2020.103639

Dataset on equine cartilage near infrared spectra, composition, and functional properties

Sarin, Jaakko K., Torniainen, Jari, Prakash, Mithilesh, Rieppo, Lassi, Afara, Isaac O. and Toyras, Juha (2019). Dataset on equine cartilage near infrared spectra, composition, and functional properties. Scientific Data, 6 (1) 164, 164. doi: 10.1038/s41597-019-0170y

Near-infrared spectroscopy enables quantitative evaluation of human cartilage biomechanical properties during arthroscopy

Prakash, M., Joukainen, A., Torniainen, J., Honkanen, M. K.M., Rieppo, L., Afara, I. O., Kröger, H., Töyräs, J. and Sarin, J. K. (2019). Near-infrared spectroscopy enables quantitative evaluation of human cartilage biomechanical properties during arthroscopy. Osteoarthritis and Cartilage, 27 (8), 1235-1243. doi: 10.1016/j.joca.2019.04.008

Near infrared spectroscopic evaluation of ligament and tendon biomechanical properties

Torniainen, Jari, Ristaniemi, Aapo, Sarin, Jaakko K., Mikkonen, Santtu, Afara, Isaac O., Stenroth, Lauri, Korhonen, Rami K. and Töyräs, Juha (2019). Near infrared spectroscopic evaluation of ligament and tendon biomechanical properties. Annals of Biomedical Engineering, 47 (1), 213-222. doi: 10.1007/s10439-018-02125-9

Cardiac measures of nuclear power plant operator stress during simulated incident and accident scenarios

Pakarinen, Satu, Korpela, Jussi, Torniainen, Jari, Laarni, Jari and Karvonen, Hannu (2018). Cardiac measures of nuclear power plant operator stress during simulated incident and accident scenarios. Psychophysiology, 55 (7) e13071. doi: 10.1111/psyp.13071

MIDAS: Open-source framework for distributed online analysis of data streams

Henelius, Andreas and Torniainen, Jari (2018). MIDAS: Open-source framework for distributed online analysis of data streams. SoftwareX, 7, 156-161. doi: 10.1016/j.softx.2018.04.004

Computational testing for automated preprocessing: A matlab toolbox to enable large scale electroencephalography data processing

Cowley, Benjamin U., Korpela, Jussi and Torniainen, Jari (2017). Computational testing for automated preprocessing: A matlab toolbox to enable large scale electroencephalography data processing. PeerJ Computer Science, 2017 (3) e108. doi: 10.7717/peerj-cs.108

Cognitive collaboration found in cardiac Physiology: Study in classroom environment

Ahonen, Lauri, Cowley, Benjamin, Torniainen, Jari, Ukkonen, Antti, Vihavainen, Arto and Puolamäki, Kai (2016). Cognitive collaboration found in cardiac Physiology: Study in classroom environment. PloS One, 11 (7) e0159178. doi: 10.1371/journal.pone.0159178

The psychophysiology primer: A guide to methods and a broad review with a focus on human-computer interaction

Cowley, Benjamin, Filetti, Marco, Lukander, Kristian, Torniainen, Jari, Henelius, Andreas, Ahonen, Lauri, Barral, Oswald, Kosunen, Ilkka, Valtonen, Teppo, Huotilainen, Minna, Ravaja, Niklas and Jacucci, Giulio (2016). The psychophysiology primer: A guide to methods and a broad review with a focus on human-computer interaction. Foundations and Trends in Human-Computer Interaction, 9 (3-4), 151-308. doi: 10.1561/1100000065

Affective processing in natural scene viewing: valence and arousal interactions in eye-fixation-related potentials

Simola, Jaana, Le Fevre, Kevin, Torniainen, Jari and Baccino, Thierry (2015). Affective processing in natural scene viewing: valence and arousal interactions in eye-fixation-related potentials. NeuroImage, 106, 21-33. doi: 10.1016/j.neuroimage.2014.11.030

Effects of cartographic elevation visualizations and map-reading tasks on eye movements

Putto, Katja, Kettunen, Pyry, Torniainen, Jari, Krause, Christina M. and Sarjakoski, L. Tiina (2014). Effects of cartographic elevation visualizations and map-reading tasks on eye movements. Cartographic Journal, 51 (3), 225-236. doi: 10.1179/1743277414Y.0000000087

Eye movement related brain responses to emotional scenes during free viewing

Simola, Jaana, Torniainen, Jari, Moisala, Mona, Kivikangas, Markus and Krause, Christina M. (2013). Eye movement related brain responses to emotional scenes during free viewing. Frontiers in Systems Neuroscience (JUL) 41, 1-16. doi: 10.3389/fnsys.2013.00041

Hydration imaging with THz Quantum Cascade Lasers: Towards Precision Agriculture

Bertling, K., Kashyap, M., Torniainen, J., Kundu, U., Singh, K., Gillespie, T., Lim, Y. L., Dean, P., Indjin, D., Han, Y., Li, L., Sengupta, A., Bandyopadhyay, A., Davies, A.G., Linfield, E. H. and Rakić, A. D. (2022). Hydration imaging with THz Quantum Cascade Lasers: Towards Precision Agriculture. Conference on Optoelectronlc and Microelectronic Materials and Devices, Adelaide, SA Australia, 11-16 December 2022.

Automated preprocessing of near infrared spectroscopic data

Torniainen, Jari, Afara, Isaac O., Prakash, Mithilesh, Sarin, Jaakko K., Stenroth, Lauri and Töyräs, Juha (2019). Automated preprocessing of near infrared spectroscopic data. Biophotonics Congress: Optics in the Life Sciences Congress 2019 (BODA,BRAIN,NTM,OMA,OMP), Tucson, AZ, United States, 14-17 April 2019. Washington, DC, United States: Optical Society of America. doi: 10.1364/BODA.2019.DS2A.6

Estimating mechanical properties of bovine knee ligaments and tendons with near infrared spectroscopy

Torniainen, Jari E., Ristaniemi, Aapo, Stenroth, Lauri and To¨yräs, Juha (2018). Estimating mechanical properties of bovine knee ligaments and tendons with near infrared spectroscopy. Clinical and Translational Biophotonics, TRANSLATIONAL 2018, Hollywood, FL United States, 3-6 April 2018. Washington, DC United States: The Optical Society. doi: 10.1364/TRANSLATIONAL.2018.JW3A.29

Multitasking and interruption management in control room operator work during simulated accidents

Laarni, Jari, Karvonen, Hannu, Pakarinen, Satu and Torniainen, Jari (2016). Multitasking and interruption management in control room operator work during simulated accidents. 13th International Conference of Engineering Psychology and Cognitive Ergonomics, EPCE 2016, Toronto, Canada, 17-22 July 2016. Heidelberg, Germany: Springer. doi: 10.1007/978-3-319-40030-3_30

Feasibility of an electrodermal activity ring prototype as a research tool

Torniainen, Jari, Cowley, Benjamin, Henelius, Andreas, Lukander, Kristian and Pakarinen, Satu (2015). Feasibility of an electrodermal activity ring prototype as a research tool. 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Milan, Italy, 25-29 August 2015. Piscataway, NJ, United States: Institute of Electrical and Electronics Engineers. doi: 10.1109/EMBC.2015.7319865