The University of Queensland

Ecological and epidemiological factors influencing arbovirus diversity, evolution and spread

Hall, Roy A., Hall-Mendelin, Sonja, Hobson-Peters, Jody, Prow, Natalie A. and Mackenzie, John S. (2016). Ecological and epidemiological factors influencing arbovirus diversity, evolution and spread. In Nikos Vasilakis and Duane J. Gubler (Ed.), Arboviruses: molecular biology, evolution and control (pp. 135-166) Poole, United Kingdom: Caister Academic Press. doi:10.21775/9781910190210.10

Arbovirus Infections

Young, Paul R., Ng, Lisa F.P., Hall, Roy A., Smith, David W. and Johansen, Cheryl A. (2013). Arbovirus Infections. In Jeremy Farrar (Ed.), Manson's Tropical Diseases: Twenty-Third Edition 23 ed. (pp. 129-161) Amsterdam, The Netherlands: Elsevier. doi:10.1016/B978-0-7020-5101-2.00015-7

Murray Valley encephalitis virus

Prow, Natalie A., Hall, Roy A. and Lobigs, Mario (2013). Murray Valley encephalitis virus. In Sunit K. Singh and Daniel Růžek (Ed.), Neuroviral infections: RNA viruses and retroviruses (pp. 167-192) Boca Raton, FL, United States: CRC Press. doi:10.1201/b13908

Nucleic acid-based infectious and pseudoinfectious flavivirus vaccines

Roby, Justin A., Hall, Roy A. and Khromykh, Alexander A. (2011). Nucleic acid-based infectious and pseudoinfectious flavivirus vaccines. In Philip R. Dormitzer, Christian W. Mandl and Rino Rappuoli (Ed.), Replicating vaccines : A new generation (pp. 299-320) Basel, Switzerland: Springer. doi:10.1007/978-3-0346-0277-8_13

Ross River virus

Hall, R. A., Prow, N. A. and Pyke, A. T. (2010). Ross River virus. In Dongyou Liu (Ed.), Molecular detection of human viral pathogens (pp. x-x) Boca Raton, FL, U.S.A.: Taylor & Francis.

Vaccine development against West Nile Virus

Khromykh, Alexander A., Chang, David C. and Hall, Roy A. (2009). Vaccine development against West Nile Virus. In Diamond, Michael S. (Ed.), West Nile Encephalitis Virus Infection: Viral Pathogenesis and the Host Immune Response 1st ed. (pp. 427-451) New York: Springer Science + Business Media.

Arbovirus infections

Broom, A. K., Smith, D. E., Hall, R. A., Johansen, C. A. and Mackenzie, J. S. (2003). Arbovirus infections. In G. C. Cook and A. I. Zumla (Ed.), Manson's Tropical Diseases 725 ed. (pp. 725-764) Edinburgh, Scotland: Elsevier.

Japanese encephalitis as an emerging virus: The emergence and spread of Japanese encephalitis in Australasia

Mackenzie, J. S., Johansen, C., Ritchie, S., Van Den Hurk, A. F. and Hall, R. A. (2002). Japanese encephalitis as an emerging virus: The emergence and spread of Japanese encephalitis in Australasia. In J.S. Mackenzie, A.D.T. Barrett and V. Deubel (Ed.), Japanese Encephalitis and West Nile Viruses 1st ed. (pp. 49-73) Germany: Springer-Verlag.

Phylogeny and molecular epidemiology of West Nile and Kunjin viruses

Scherret, J. H., Mackenzie, J. S., Hall, R. A., Deubel, V. and Gould, E. A. (2002). Phylogeny and molecular epidemiology of West Nile and Kunjin viruses. In J.S. Mackenzie, A.D.T. Barrett and V. Deubel (Ed.), Japanese Encephalitis and West Nile Viruses 1st ed. (pp. 373-390) Germany: Springer-Verlag.

The ecology and epidemiology of Kunjin virus

Hall, R. A., Broom, A. K., Smith, D. and Mackenzie, J. S. (2002). The ecology and epidemiology of Kunjin virus. In J.S. Mackenzie, A.D.T. Barrett and V. Deubel (Ed.), Japanese Encephalitis and West Nile Viruses 1st ed. (pp. 253-269) Germany: Springer-Verlag.

Molecular epidemiology and phylogeny of Australian arboviruses

Mackenzie, J. S., Hall, R. A., Lindsay, M., Bielefeldt-Ohmann, H. and Poidinger, M. (2000). Molecular epidemiology and phylogeny of Australian arboviruses. In GL Hammer, N Nichols, C Mitchell and R. C. Andrew Thompson (Ed.), Molecular epidemiology of infectious diseases (pp. 297-315) London: Oxford University Press.

Taxonomy of the order Bunyavirales: update 2019

Abudurexiti, Abulikemu, Adkins, Scott, Alioto, Daniela, Alkhovsky, Sergey V., Avšič-Županc, Tatjana, Ballinger, Matthew J., Bente, Dennis A., Beer, Martin, Bergeron, Éric, Blair, Carol D., Briese, Thomas, Buchmeier, Michael J., Burt, Felicity J., Calisher, Charles H., Cháng, Chénchén, Charrel, Rémi N., Choi, Il Ryong, Clegg, J. Christopher S., de la Torre, Juan Carlos, de Lamballerie, Xavier, Dèng, Fēi, Di Serio, Francesco, Digiaro, Michele, Drebot, Michael A., Duàn, Xiǎoméi, Ebihara, Hideki, Elbeaino, Toufic, Ergünay, Koray, Fulhorst, Charles F., Garrison, Aura R., Gāo, George Fú, Gonzalez, Jean-Paul J., Groschup, Martin H., Günther, Stephan, Haenni, Anne-Lise, Hall, Roy A., Hepojoki, Jussi, Hewson, Roger, Hú, Zhìhóng, Hughes, Holly R., Jonson, Miranda Gilda, Junglen, Sandra, Klempa, Boris, Klingström, Jonas, Kòu, Chūn, Laenen, Lies, Lambert, Amy J., Langevin, Stanley A., Liu, Dan, Lukashevich, Igor S., Luò, Tāo, Lǚ, Chuánwèi, Maes, Piet, de Souza, William Marciel, Marklewitz, Marco, Martelli, Giovanni P., Matsuno, Keita, Mielke-Ehret, Nicole, Minutolo, Maria, Mirazimi, Ali, Moming, Abulimiti, Mühlbach, Hans-Peter, Naidu, Rayapati, Navarro, Beatriz, Nunes, Márcio Roberto Teixeira, Palacios, Gustavo, Papa, Anna, Pauvolid-Corrêa, Alex, Pawęska, Janusz T., Qiáo, Jié, Radoshitzky, Sheli R., Resende, Renato O., Romanowski, Víctor, Sall, Amadou Alpha, Salvato, Maria S., Sasaya, Takahide, Shěn, Shū, Shí, Xiǎohóng, Shirako, Yukio, Simmonds, Peter, Sironi, Manuela, Song, Jin-Won, Spengler, Jessica R., Stenglein, Mark D., Sū, Zhèngyuán, Sūn, Sùróng, Táng, Shuāng, Turina, Massimo, Wáng, Bó, Wáng, Chéng, Wáng, Huálín, Wáng, Jūn, Wèi, Tàiyún, Whitfield, Anna E., Zerbini, F. Murilo, Zhāng, Jìngyuàn, Zhāng, Lěi, Zhāng, Yànfāng, Zhang, Yong-Zhen, Zhāng, Yújiāng, Zhou, Xueping, Zhū, Lìyǐng and Kuhn, Jens H. (2019) Taxonomy of the order Bunyavirales: update 2019. Archives of Virology, 164 7: 1949-1965. doi:10.1007/s00705-019-04253-6

Determinants of Zika virus host tropism uncovered by deep mutational scanning

Setoh, Yin Xiang, Amarilla, Alberto A., Peng, Nias Y. G., Griffiths, Rebecca E., Carrera, Julio, Freney, Morgan E., Nakayama, Eri, Ogawa, Shinya, Watterson, Daniel, Modhiran, Naphak, Nanyonga, Faith Elizabeth, Torres, Francisco J., Slonchak, Andrii, Periasamy, Parthiban, Prow, Natalie A., Tang, Bing, Harrison, Jessica, Hobson-Peters, Jody, Cuddihy, Thom, Cooper-White, Justin, Hall, Roy A., Young, Paul R., Mackenzie, Jason M., Wolvetang, Ernst, Bloom, Jesse D., Suhrbier, Andreas and Khromykh, Alexander A. (2019) Determinants of Zika virus host tropism uncovered by deep mutational scanning. Nature Microbiology, 4 5: 876-887. doi:10.1038/s41564-019-0399-4

Taxonomy of the order Bunyavirales: second update 2018

Maes, Piet, Adkins, Scott, Alkhovsky, Sergey V., Avsic-Zupanc, Tatjana, Ballinger, Matthew J., Bente, Dennis A., Beer, Martin, Bergeron, Eric, Blair, Carol D., Briese, Thomas, Buchmeier, Michael J., Burt, Felicity J., Calisher, Charles H., Charrel, Remi N., Choi, Il Ryong, Clegg, J. Christopher S., de la Torre, Juan Carlos, de Lamballerie, Xavier, DeRisi, Joseph L., Digiaro, Michele, Drebot, Mike, Ebihara, Hideki, Elbeaino, Toufic, Ergunay, Koray, Fulhorst, Charles F., Garrison, Aura R., Gao, George Fu, Gonzalez, Jean-Paul J., Groschup, Martin H., Guenther, Stephan, Haenni, Anne-Lise, Hall, Roy A., Hewson, Roger, Hughes, Holly R., Jain, Rakesh K., Jonson, Miranda Gilda, Junglen, Sandra, Klempa, Boris, Klingstrom, Jonas, Kormelink, Richard, Lambert, Amy J., Langevin, Stanley A., Lukashevich, Igor S., Marklewitz, Marco, Martelli, Giovanni P., Mielke-Ehret, Nicole, Mirazimi, Ali, Muehlbach, Hans-Peter, Naidu, Rayapati, Teixeira Nunes, Marcio Roberto, Palacios, Gustavo, Papa, Anna, Paweska, Janusz T., Peters, Clarence J., Plyusnin, Alexander, Radoshitzky, Sheli R., Resende, Renato O., Romanowski, Victor, Sall, Amadou Alpha, Salvato, Maria S., Sasaya, Takahide, Schmaljohn, Connie, Shi, Xiaohong, Shirako, Yukio, Simmonds, Peter, Sironi, Manuela, Song, Jin-Won, Spengler, Jessica R., Stenglein, Mark D., Tesh, Robert B., Turina, Massimo, Wei, Taiyun, Whitfield, Anna E., Yeh, Shyi-Dong, Murilo Zerbini, F., Zhang, Yong-Zhen, Zhou, Xueping and Kuhn, Jens H. (2019) Taxonomy of the order Bunyavirales: second update 2018. Archives of Virology, 164 3: 927-941. doi:10.1007/s00705-018-04127-3

Inactivation of yellow fever virus in plasma after treatment with methylene blue and visible light and in platelet concentrates following treatment with ultraviolet C light

Faddy, Helen M., Fryk, Jesse J., Hall, Roy A., Young, Paul R., Reichenberg, Stefan, Tolksdorf, Frank, Sumian, Chryslain, Gravemann, Ute, Seltsam, Axel and Marks, Denese C. (2019) Inactivation of yellow fever virus in plasma after treatment with methylene blue and visible light and in platelet concentrates following treatment with ultraviolet C light. Transfusion, 59 7: 2223-2227. doi:10.1111/trf.15332

The taxonomy of an Australian nodavirus isolated from mosquitoes

Warrilow, David, Huang, Bixing, Newton, Natalee D., Harrison, Jessica J., Johnson, Karyn N., Chow, Weng Kong, Hall, Roy A. and Hobson-Peters, Jody (2018) The taxonomy of an Australian nodavirus isolated from mosquitoes. PLoS ONE, 13 12: e0210029. doi:10.1371/journal.pone.0210029

Could Australian ticks harbour emerging viral pathogens?

O'Brien, Caitlin A., Hall, Roy A. and Lew-Tabor, Ala (2018) Could Australian ticks harbour emerging viral pathogens?. Microbiology Australia, 39 4: 185-190. doi:10.1071/MA18060

The recently identified flavivirus Bamaga virus is transmitted horizontally by Culex mosquitoes and interferes with West Nile virus replication in vitro and transmission in vivo

Colmant, Agathe M. G., Hall-Mendelin, Sonja, Ritchie, Scott A., Bielefeldt-Ohmann, Helle, Harrison, Jessica J., Newton, Natalee D., O’Brien, Caitlin A., Cazier, Chris, Johansen, Cheryl A., Hobson-Peters, Jody, Hall, Roy A. and van den Hurk, Andrew F. (2018) The recently identified flavivirus Bamaga virus is transmitted horizontally by Culex mosquitoes and interferes with West Nile virus replication in vitro and transmission in vivo. PLoS Neglected Tropical Diseases, 12 10: e0006886. doi:10.1371/journal.pntd.0006886

Discovery of a novel iflavirus sequence in the eastern paralysis tick Ixodes holocyclus

O'Brien, Caitlin A., Hall-Mendelin, Sonja, Hobson-Peters, Jody, Deliyannis, Georgia, Allen, Andy, Lew-Tabor, Ala, Rodriguez-Valle, Manuel, Barker, Dayana, Barker, Stephen C. and Hall, Roy A. (2018) Discovery of a novel iflavirus sequence in the eastern paralysis tick Ixodes holocyclus. Archives of Virology, 163 9: 1-7. doi:10.1007/s00705-018-3868-9

Newly discovered mosquito viruses help control vector-borne viral diseases

Hall, Roy A. and Hobson-Peters, Jody (2018) Newly discovered mosquito viruses help control vector-borne viral diseases. Microbiology Australia, 39 2: 72-75. doi:10.1071/MA18020

New genotypes of Liao ning virus (LNV) in Australia exhibit an insect-specific phenotype

Prow, Natalie A., Mah, Marcus G., Deerain, Joshua M., Warrilow, David, Colmant, Agathe M. G., O'Brien, Caitlin A., Harrison, Jessica J., McLean, Breeanna J., Hewlett, Elise K., Piyasena, Thisun B. H., Hall-Mendelin, Sonja, van den Hurk, Andrew F., Watterson, Daniel, Huang, Bixing, Schulz, Benjamin L., Webb, Cameron E., Johansen, Cheryl A., Chow, Weng K., Hobson-Peters, Jody, Cazier, Chris, Coffey, Lark L., Faddy, Helen M., Suhrbier, Andreas, Bielefeldt-Ohmann, Helle and Hall, Roy A. (2018) New genotypes of Liao ning virus (LNV) in Australia exhibit an insect-specific phenotype. The Journal of General Virology, 99 4: 596-609. doi:10.1099/jgv.0.001038

Ross River virus in Australian blood donors: possible implications for blood transfusion safety

Faddy, Helen M., Tran, Thu V., Hoad, Veronica C., Seed, Clive R., Viennet, Elvina, Chan, Hiu-Tat, Harley, Robert, Hewlett, Elise, Hall, Roy A., Bielefeldt-Ohmann, Helle, Flower, Robert L. P. and Prow, Natalie A. (2018) Ross River virus in Australian blood donors: possible implications for blood transfusion safety. Transfusion, 58 2: 485-492. doi:10.1111/trf.14472

Reduction of Zika virus infectivity in platelet concentrates after treatment with ultraviolet C light and in plasma after treatment with methylene blue and visible light

Fryk, Jesse J., Marks, Denese C., Hobson-Peters, Jody, Watterson, Daniel, Hall, Roy A., Young, Paul R., Reichenberg, Stefan, Tolksdorf, Frank, Sumian, Chryslain, Gravemann, Ute, Seltsam, Axel and Faddy, Helen M. (2017) Reduction of Zika virus infectivity in platelet concentrates after treatment with ultraviolet C light and in plasma after treatment with methylene blue and visible light. Transfusion, 57 11: 2677-2682. doi:10.1111/trf.14256

Differential Diagnosis of Flavivirus Infections in Horses Using Viral Envelope Protein Domain III Antigens in Enzyme-Linked Immunosorbent Assay

Piyasena, Thisun B. H., Setoh, Yin X., Hobson-Peters, Jody, Prow, Natalie A., Bielefeldt-Ohmann, Helle, Khromykh, Alexander A., Perera, David, Cardosa, Mary J., Kirkland, Peter D. and Hall, Roy A. (2017) Differential Diagnosis of Flavivirus Infections in Horses Using Viral Envelope Protein Domain III Antigens in Enzyme-Linked Immunosorbent Assay. Vector Borne and Zoonotic Diseases, 17 12: 825-835. doi:10.1089/vbz.2017.2172

Discovery of new orbiviruses and totivirus from Anopheles mosquitoes in Eastern Australia

Colmant, Agathe M. G. , Etebari, Kayvan, Webb, Cameron E., Ritchie, Scott A., Jansen, Cassie C. , van den Hurk, Andrew F., Bielefeldt-Ohmann, Helle, Hobson-Peters, Jody, Asgari, Sassan and Hall, Roy A. (2017) Discovery of new orbiviruses and totivirus from Anopheles mosquitoes in Eastern Australia. Archives of Virology, 162 11: 1-6. doi:10.1007/s00705-017-3515-x

Characterization of Fitzroy River Virus and serologic evidence of human and animal infection

Johansen, Cheryl A., Williams, Simon H., Melville, Lorna F., Nicholson, Jay, Hall, Roy A., Bielefeldt-Ohmann, Helle, Prow, Natalie A., Chidlow, Glenys R., Wong, Shani, Sinha, Rohini, Williams, David T., Lipkin, W. Ian and Smith, David W. (2017) Characterization of Fitzroy River Virus and serologic evidence of human and animal infection. Emerging Infectious Diseases, 23 8: 1289-1299. doi:10.3201/eid2308.161440

A new clade of insect-specific flaviviruses from Australian Anopheles mosquitoes displays species-specific host-restriction

Colmant, Agathe M. G., Hobson-Peters, Jody, Bielefeldt-Ohmann, Helle, van den Hurk, Andrew F., Hall-Mendelin, Sonja, Chow, Weng Kong, Johansen, Cheryl A., Fros, Jelke, Simmonds, Peter, Watterson, Daniel, Cazier, Chris, Etebari, Kayvan, Asgari, Sassan, Schulz, Benjamin L., Beebe, Nigel, Vet, Laura J., Piyasena, Thisun B. H., Nguyen, Hong-Duyen, Barnard, Ross T. and Hall, Roy A. (2017) A new clade of insect-specific flaviviruses from Australian Anopheles mosquitoes displays species-specific host-restriction. mSphere, 2 4: e00262-17.1-e00262-17.19. doi:10.1128/mSphere.00262-17

Understanding the role of microRNAs in the interaction of Aedes aegypti mosquitoes with an insect-specific flavivirus

Lee, Morris, Etebari, Kayvan, Hall-Mendelin, Sonja, van den Hurk, Andrew F., Hobson-Peters, Jody, Vatipally, Sreenu, Schnettler, Esther, Hall, Roy and Asgari, Sassan (2017) Understanding the role of microRNAs in the interaction of Aedes aegypti mosquitoes with an insect-specific flavivirus. Journal of General Virology, 98 7: 1892-1903. doi:10.1099/jgv.0.000832

Infectious DNAs derived from insect-specific flavivirus genomes enable identification of pre- and post-entry host restrictions in vertebrate cells

Piyasena, Thisun B. H. , Setoh, Yin X., Hobson-Peters, Jody, Newton, Natalee D. , Bielefeldt-Ohmann, Helle, McLean, Breeanna J. , Vet, Laura J. , Khromykh, Alexander A. and Hall, Roy A. (2017) Infectious DNAs derived from insect-specific flavivirus genomes enable identification of pre- and post-entry host restrictions in vertebrate cells. Scientific Reports, 7 1: 2940.1-2940.11. doi:10.1038/s41598-017-03120-1

Discovery and characterisation of castlerea virus, a new species of Negevirus isolated in Australia

O'Brien, Caitlin A., McLean, Breeanna J., Colmant, Agathe M. G., Harrison, Jessica J., Hall-Mendelin, Sonja, van den Hurk, Andrew F., Johansen, Cheryl A., Watterson, Daniel, Bielefeldt-Ohmann, Helle, Newton, Natalee D., Schulz, Benjamin L., Hall, Roy A. and Hobson-Peters, Jody (2017) Discovery and characterisation of castlerea virus, a new species of Negevirus isolated in Australia. Evolutionary Bioinformatics, 13 1176934317691269. doi:10.1177/1176934317691269

Mutation of the N-Terminal region of Chikungunya Virus Capsid Protein: implications for vaccine design

Taylor, Adam, Liu, Xiang, Zaid, Ali, Goh, Lucas Y. H., Hobson-Peters, Jody, Hall, Roy A., Merits, Andres and Mahalingam, Suresh (2017) Mutation of the N-Terminal region of Chikungunya Virus Capsid Protein: implications for vaccine design. mBio, 8 1: e01970-16.1-e01970-16.14. doi:10.1128/mBio.01970-16

Characterization of non-lethal West Nile Virus (WNV) infection in horses: subclinical pathology and innate immune response

Bielefeldt-Ohmann, Helle, Bosco-Lauth, Angela, Hartwig, Airn-Elizabeth, Uddin, M. Jasim, Barcelon, Jean, Suen, Willy W., Wang, Wenqi, Hall, Roy A. and Bowen, Richard A. (2017) Characterization of non-lethal West Nile Virus (WNV) infection in horses: subclinical pathology and innate immune response. Microbial Pathogenesis, 103 71-79. doi:10.1016/j.micpath.2016.12.018

Commensal viruses of mosquitoes: Host restriction, transmission, and interaction with arboviral pathogens

Hall, Roy A., Bielefeldt-Ohmann, Helle, McLean, Breeanna J., O'Brien, Caitlin A., Colmant, Agathe M.G., Piyasena, Thisun B.H., Harrison, Jessica J., Newton, Natalee D., Barnard, Ross T., Prow, Natalie A., Deerain, Joshua M., Mah, Marcus G.K.Y. and Hobson-Peters, Jody (2017) Commensal viruses of mosquitoes: Host restriction, transmission, and interaction with arboviral pathogens. Evolutionary Bioinformatics, 12 Suppl 2: 35-44. doi:10.4137/EBO.S40740

Dengue and chikungunya viruses in plasma are effectively inactivated after treatment with methylene blue and visible light

Fryk, Jesse J., Marks, Denese C., Hobson-Peters, Jody, Prow, Natalie A., Watterson, Daniel, Hall, Roy A., Young, Paul R., Reichenberg, Stefan, Sumian, Chryslain and Faddy, Helen M. (2016) Dengue and chikungunya viruses in plasma are effectively inactivated after treatment with methylene blue and visible light. Transfusion, 56 9: 2278-2285. doi:10.1111/trf.13729

Virulence and evolution of West Nile Virus, Australia, 1960-2012

Prow, Natalie A., Edmonds, Judith H., Williams, David T., Setoh, Yin X., Bielefeldt-Ohmann, Helle, Suen, Willy W., Hobson-Peters, Jody, van den Hurk, Andrew F., Pyke, Alyssa T., Hall-Mendelin, Sonja, Northill, Judith A., Johansen, Cheryl A., Warrilow, David, Wang, Jianning, Kirkland, Peter D., Doggett, Stephen, Andrade, Christy C., Brault, Aaron C., Khromykh, Alexander A. and Hall, Roy A. (2016) Virulence and evolution of West Nile Virus, Australia, 1960-2012. Emerging Infectious Diseases, 22 8: 1353-1362. doi:10.3201/eid2208.151719

The insect-specific Palm Creek virus modulates West Nile virus infection in and transmission by Australian mosquitoes

Hall-Mendelin, Sonja, McLean, Breeanna J., Bielefeldt-Ohmann, Helle, Hobson-Peters, Jody, Hall, Roy A. and van den Hurk, Andrew F. (2016) The insect-specific Palm Creek virus modulates West Nile virus infection in and transmission by Australian mosquitoes. Parasites and vectors, 9 1: 414. doi:10.1186/s13071-016-1683-2

Tissue-specific transcription profile of cytokine and chemokine genes associated with flavivirus control and non-lethal neuropathogenesis in rabbits

Suen, Willy W., Uddin, Muhammad Jasim, Prow, Natalie A., Bowen, Richard A., Hall, Roy A. and Bielefeldt-Ohmann, Helle (2016) Tissue-specific transcription profile of cytokine and chemokine genes associated with flavivirus control and non-lethal neuropathogenesis in rabbits. Virology, 494 1-14. doi:10.1016/j.virol.2016.03.026

Synthetic biology provides a toehold in the fight against Zika

Hall, Roy A. and Macdonald, Joanne (2016) Synthetic biology provides a toehold in the fight against Zika. Cell Host and Microbe, 19 6: 752-754. doi:10.1016/j.chom.2016.05.020.

Kinetics of the West Nile virus induced transcripts of selected cytokines and Toll-like receptors in equine peripheral blood mononuclear cells

Uddin, Muhammad Jasim , Suen, Willy W. , Bosco‑Lauth, Angela , Hartwig, Airn‑Elizabeth , Hall, Roy A. , Bowen, Richard A. and Bielefeldt‑Ohmann, Helle (2016) Kinetics of the West Nile virus induced transcripts of selected cytokines and Toll-like receptors in equine peripheral blood mononuclear cells. Veterinary Research, 47 1: . doi:10.1186/s13567-016-0347-8

Inactivation of dengue, chikungunya, and Ross River viruses in platelet concentrates after treatment with ultraviolet C light

Faddy, Helen M., Fryk, Jesse J., Prow, Natalie A., Watterson, Daniel, Young, Paul R., Hall, Roy A., Tolksdorf, Frank, Sumian, Chryslain, Gravemann, Ute, Seltsam, Axel and Marks, Denese C. (2016) Inactivation of dengue, chikungunya, and Ross River viruses in platelet concentrates after treatment with ultraviolet C light. Transfusion, 56 6pt2: 1548-1555. doi:10.1111/trf.13519

A new Orbivirus isolated from mosquitoes in north-western Australia shows antigenic and genetic similarity to Corriparta virus but does not replicate in vertebrate cells

Harrison, Jessica J., Warrilow, David, McLean, Breeanna J., Watterson, Daniel, O'Brien, Caitlin A., Colmant, Agathe M.G., Johansen, Cheryl A., Barnard, Ross T., Hall-Mendelin, Sonja, Davis, Steven S., Hall, Roy A. and Hobson-Peters, Jody (2016) A new Orbivirus isolated from mosquitoes in north-western Australia shows antigenic and genetic similarity to Corriparta virus but does not replicate in vertebrate cells. Viruses, 8 5: e141.1-e141.15. doi:10.3390/v8050141

A newly discovered flavivirus in the yellow fever virus group displays restricted replication in vertebrates

Colmant, Agathe M. G., Bielefeldt-Ohmann, Helle, Hobson-Peters, Jody, Suen, Willy W., O'Brien, Caitlin A., van den Hurk, Andrew F. and Hall, Roy A. (2016) A newly discovered flavivirus in the yellow fever virus group displays restricted replication in vertebrates. Journal of General Virology, 97 5: 1087-1093. doi:10.1099/jgv.0.000430

The impact of prior flavivirus infections on the development of Type 2 diabetes among the Indigenous Australians

Sorenson, Alanna, Owens, Leigh, Caltabiano, Marie, Cadet-James, Yvonne, Hall, Roy, Govan, Brenda and Clancy, Paula (2016) The impact of prior flavivirus infections on the development of Type 2 diabetes among the Indigenous Australians. American Journal of Tropical Medicine And Hygiene, 95 2: 265-268. doi:10.4269/ajtmh.15-0727

Discovery and characterisation of a new insect-specific bunyavirus from Culex mosquitoes captured in northern Australia

Hobson-Peters, Jody, Warrilow, David, McLean, Breeanna J., Watterson, Daniel, Colmant, Agathe M.G., van den Hurk, Andrew F., Hall-Mendelin, Sonja, Hastie, Marcus L., Gorman, Jeffrey J., Harrison, Jessica J., Prow, Natalie A., Barnard, Ross T., Allcock, Richard, Johansen, Cheryl A. and Hall, Roy A. (2016) Discovery and characterisation of a new insect-specific bunyavirus from Culex mosquitoes captured in northern Australia. Virology, 489 269-281. doi:10.1016/j.virol.2015.11.003

End-point disease investigation for virus strains of intermediate virulence as illustrated by flavivirus infections

Suen, Willy W., Prow, Natalie A., Setoh, Yin X., Hall, Roy A. and Bielefeldt-Ohmann, Helle (2016) End-point disease investigation for virus strains of intermediate virulence as illustrated by flavivirus infections. Journal of General Virology, 97 2: 366-377. doi:10.1099/jgv.0.000356

West Nile virus challenge alters the transcription profiles of innate immune genes in rabbit peripheral blood mononuclear cells

Uddin, Muhammad J., Suen, Willy W., Prow, Natalie A., Hall, Roy A. and Bielefeldt-Ohmann, Helle (2015) West Nile virus challenge alters the transcription profiles of innate immune genes in rabbit peripheral blood mononuclear cells. Frontiers in Veterinary Science, 2 DEC: 76. doi:10.3389/fvets.2015.00076

Detection of emergent strains of West Nile virus with a blood screening assay

Faddy, Helen M., Flower, Robert L.P., Seed, Clive R., Ismay, Susan, Ong, Edgar, Linnen, Jeffrey M., Cory, Robin, Holmberg, Jerry A., Hall, Roy A., Setoh, Yin X., Deerain, Joshua M. and Prow, Natalie A. (2015) Detection of emergent strains of West Nile virus with a blood screening assay. Transfusion, 56 6: 1503-1507. doi:10.1111/trf.13443

A novel insect-specific flavivirus replicates only in Aedes-derived cells and persists at high prevalence in wild Aedes vigilax populations in Sydney, Australia

McLean, Breeanna J., Hobson-Peters, Jody, Webb, Cameron E., Watterson, Daniel, Prow, Natalie A., Nguyen, Hong Duyen, Hall-Mendelin, Sonja, Warrilow, David, Johansen, Cheryl A., Jansen, Cassie C., van den Hurk, Andrew F., Beebe, Nigel W., Schnettler, Esther, Barnard, Ross T. and Hall, Roy A. (2015) A novel insect-specific flavivirus replicates only in Aedes-derived cells and persists at high prevalence in wild Aedes vigilax populations in Sydney, Australia. Virology, 486 272-283. doi:10.1016/j.virol.2015.07.021

Experimental west nile virus infection in rabbits: an alternative model for studying induction of disease and virus control

Suen, Willy W., Uddin, Muhammad J., Wang, Wenqi, Brown, Vienna, Adney, Danielle R., Broad, Nicole, Prow, Natalie A., Bowen, Richard A., Hall, Roy A. and Bielefeldt-Ohmann, Helle (2015) Experimental west nile virus infection in rabbits: an alternative model for studying induction of disease and virus control. Pathogens, 4 3: 529-558. doi:10.3390/pathogens4030529

Do You Kiss Your Mother with That Mouth? An Authentic Large-Scale Undergraduate Research Experience in Mapping the Human Oral Microbiome

Wang, Jack T.H., Daly, Joshua N., Willner, Dana L., Patil, Jayee, Hall, Roy A., Schembri, Mark A., Tyson, Gene W. and Hugenholtz, Philip (2015) Do You Kiss Your Mother with That Mouth? An Authentic Large-Scale Undergraduate Research Experience in Mapping the Human Oral Microbiome. Journal of Microbiology and Biology Education, 16 1: 50-60. doi:10.1128/jmbe.v16i1.816

The I22V and L72S substitutions in West Nile virus prM protein promote enhanced prM/E heterodimerisation and nucleocapsid incorporation

Setoh, Yin Xiang, Tan, Cindy Si En, Prow, Natalie A., Hobson-Peters, Jody, Young, Paul R., Khromykh, Alexander A. and Hall, Roy A. (2015) The I22V and L72S substitutions in West Nile virus prM protein promote enhanced prM/E heterodimerisation and nucleocapsid incorporation. Virology Journal, 12 1: 72.1-72.5. doi:10.1186/s12985-015-0303-7

A sensitive epitope-blocking ELISA for the detection of Chikungunya virus-specific antibodies in patients.

Goh, Lucas Y. H., Kam, Yiu-Wing, Metz, Stefan W., Hobson-Peters, Jody, Prow, Natalie A., McCarthy, Suzi, Smith, David W., Pijlman, Gorben P., Ng, Lisa F. and Hall, Roy A. (2015) A sensitive epitope-blocking ELISA for the detection of Chikungunya virus-specific antibodies in patients.. Journal of Virological Methods, 222 55-61. doi:10.1016/j.jviromet.2015.05.011

Viral RNA intermediates as targets for detection and discovery of novel and emerging mosquito-borne viruses

O'Brien, Caitlin A., Hobson-Peters, Jody, Yam, Alice Wei Yee, Colmant, Agathe M. G., McLean, Breeanna J., Prow, Natalie A., Watterson, Daniel, Hall-Mendelin, Sonja, Warrilow, David, Ng, Mah-Lee, Khromykh, Alexander A. and Hall, Roy A. (2015) Viral RNA intermediates as targets for detection and discovery of novel and emerging mosquito-borne viruses. PLoS Neglected Tropical Diseases, 9 3: 1-27. doi:10.1371/journal.pntd.0003629

A case of Murray Valley encephalitis in a 2-year-old Australian Stock Horse in south-east Queensland

Barton, A. J., Prow, N. A., Hall, R. A., Kidd, L. and Bielefeldt-Ohmann, H. (2015) A case of Murray Valley encephalitis in a 2-year-old Australian Stock Horse in south-east Queensland. Australian Veterinary Journal, 93 3: 53-57. doi:10.1111/avj.12294

Monoclonal antibodies specific for the capsid protein of chikungunya virus suitable for multiple applications.

Goh, Lucas Y. H., Hobson-Peters, Jody, Prow, Natalie A., Gardner, Joy, Bielefeldt-Ohmann, Helle, Suhrbier, Andreas and Hall, Roy A. (2015) Monoclonal antibodies specific for the capsid protein of chikungunya virus suitable for multiple applications.. Journal of General Virology, 96 3: 507-512. doi:10.1099/jgv.0.000002.

Post-translational regulation and modifications of flavivirus structural proteins

Roby, Justin A., Setoh, Yin Xiang, Hall, Roy A. and Khromykh, Alexander A. (2015) Post-translational regulation and modifications of flavivirus structural proteins. Journal of General Virology, 96 7: 1551-1569. doi:10.1099/vir.0.000097

Systematic analysis of viral genes responsible for differential virulence between American and Australian West Nile virus strains

Setoh, Yin Xiang, Prow, Natalie A., Rawle, Daniel J., Tan, Cindy Si En, Edmonds, Judith H., Hall, Roy A. and Khromykh, Alexander A. (2015) Systematic analysis of viral genes responsible for differential virulence between American and Australian West Nile virus strains. Journal of General Virology, 96 Pt 6: 1297-1308. doi:10.1099/vir.0.000069

The Chikungunya Virus Capsid Protein Contains Linear B Cell Epitopes in the N- and C-Terminal Regions that are Dependent on an Intact C-Terminus for Antibody Recognition

Goh, Lucas Y. H., Hobson-Peters, Jody, Prow, Natalie A., Baker, Kelly, Piyasena, Thisun B. H., Taylor, Carmel T., Rana, Ashok, Hastie, Marcus L., Gorman, Jeff J. and Hall, Roy A. (2015) The Chikungunya Virus Capsid Protein Contains Linear B Cell Epitopes in the N- and C-Terminal Regions that are Dependent on an Intact C-Terminus for Antibody Recognition. Viruses, 7 6: 2943-2964. doi:10.3390/v7062754

Safety and immunogenicity of a delta inulin-adjuvanted inactivated Japanese encephalitis virus vaccine in pregnant mares and foals

Bielefeldt-Ohmann, Helle, Prow, Natalie A., Wang, Wenqi, Tan, Cindy S. E., Coyle, Mitchell, Douma, Alysha, Hobson-Peters, Jody, Kidd, Lisa, Hall, Roy A. and Petrovsky, Nikolai (2014) Safety and immunogenicity of a delta inulin-adjuvanted inactivated Japanese encephalitis virus vaccine in pregnant mares and foals. Veterinary Research, 45 1: 130.1-130.9. doi:10.1186/s13567-014-0130-7

Role of enhanced vector transmission of a new West Nile virus strain in an outbreak of equine disease in Australia in 2011

van den Hurk, Andrew F., Hall-Mendelin, Sonja, Webb, Cameron E., Tan, Cindy S. E., Frentiu, Francesca D., Prow, Natalie A, and Hall, Roy A. (2014) Role of enhanced vector transmission of a new West Nile virus strain in an outbreak of equine disease in Australia in 2011. Parasites and Vectors, 7 Art No.: 586: . doi:10.1186/s13071-014-0586-3

Programmed ribosomal frameshift alters expression of West Nile virus genes and facilitates virus replication in birds and mosquitoes

Melian, Ezequiel Balmori, Hall-Mendelin, Sonja, Du, Fangyao, Owens, Nick, Bosco-Lauth, Angela M., Nagasaki, Tomoko, Rudd, Stephen, Brault, Aaron C., Bowen, Richard A., Hall, Roy A., van den Hurk, Andrew F. and Khromykh, Alexander A. (2014) Programmed ribosomal frameshift alters expression of West Nile virus genes and facilitates virus replication in birds and mosquitoes. PLoS Pathogens, 10 11: e1004447.1-e1004447.18. doi:10.1371/journal.ppat.1004447

The effect of riboflavin and ultraviolet light on the infectivity of arboviruses

Faddy, Helen M., Prow, Natalie A., Fryk, Jesse J., Hall, Roy A., Keil, Shawn D., Goodrich, Raymond P. and Marks, Denese C. (2014) The effect of riboflavin and ultraviolet light on the infectivity of arboviruses. Transfusion, 55 4: 824-831. doi:10.1111/trf.12899

The increased expression of capsid protein in trans enhances production of single-round infectious particles by West Nile virus DNA vaccine candidate

Roby, Justin A., Bielefeldt-Ohmann, Helle, Prow, Natalie A., Chang, David C., Hall, Roy A. and Khromykh, Alexander A. (2014) The increased expression of capsid protein in trans enhances production of single-round infectious particles by West Nile virus DNA vaccine candidate. Journal of General Virology, 95 10: 2176-2191. doi:10.1099/vir.0.064121-0

The Australian public is still vulnerable to emerging virulent strains of West Nile virus

Prow, Natalie A., Hewlett, Elise K., Faddy, Helen M., Coiacetto, Flaminia, Wang, Wenqi, Cox, Tarnya, Hall, Roy A. and Bielefeldt-Ohmann, Helle (2014) The Australian public is still vulnerable to emerging virulent strains of West Nile virus. Frontiers in Public Health, 2 146: 1-8. doi:10.3389/fpubh.2014.00146

The West Nile-like flavivirus Koutango is highly virulent in mice due to delayed viral clearance and the induction of a poor neutralizing antibody response

Prow, Natalie A., Setoh, Yin X., Biron, Rebecca M., Sester, David P., Kim, Kwang Sik, Hobson-Peters, Jody, Hall, Roy A. and Bielefeldt-Ohmann, Helle (2014) The West Nile-like flavivirus Koutango is highly virulent in mice due to delayed viral clearance and the induction of a poor neutralizing antibody response. Journal of Virology, 88 17: 9947-9962. doi:10.1128/JVI.01304-14

Mechanism of West Nile virus neuroinvasion: a critical appraisal

Suen, Willy W., Prow, Natalie A., Hall, Roy A. and Bielefeldt-Ohmann, Helle (2014) Mechanism of West Nile virus neuroinvasion: a critical appraisal. Viruses, 6 7: 2796-2825. doi:10.3390/v6072796

Evaluation of a mouse model for the West Nile virus group for the purpose of determining viral pathotypes

Bingham, John, Payne, Jean, Harper, Jennifer, Frazer, Leah, Eastwood, Sarah, Wilson, Susanne, Lowther, Sue, Lunt, Ross, Warner, Simone, Carr, Mary, Hall, Roy A. and Durr, Peter A. (2014) Evaluation of a mouse model for the West Nile virus group for the purpose of determining viral pathotypes. Journal of General Virology, 95 6: 1221-1232. doi:10.1099/vir.0.063537-0

A new species of mesonivirus from the Northern Territory, Australia

Warrilow, David, Watterson, Daniel, Hall, Roy A., Davis, Steven S., Weir, Richard, Kurucz, Nina, Whelan, Peter, Allcock, Richard, Hall-Mendelin, Sonja, O'Brien, Caitlin A. and Hobson-Peters, Jody (2014) A new species of mesonivirus from the Northern Territory, Australia. PLoS ONE, 9 3: e91103.1-e91103.9. doi:10.1371/journal.pone.0091103

Complete coding sequences of three members of the Kokobera group of flaviviruses

Warrilow, David, Hall-Mendelin, Sonja, Hobson-Peters, Jody, Prow, Natalie A., Allcock, Richard and Hall, Roy A. (2014) Complete coding sequences of three members of the Kokobera group of flaviviruses. Genome Announcements, 2 5: e00890-14.1-e00890-14.2. doi:10.1128/genomeA.00890-14

West Nile virus genome with glycosylated envelope protein and deletion of alpha helixes 1, 2 and 4 in the capsid gene is non-infectious and efficiently secretes sub-viral particles

Roby, Justin A., Hall, Roy A. and Khromykh, Alexander A. (2013) West Nile virus genome with glycosylated envelope protein and deletion of alpha helixes 1, 2 and 4 in the capsid gene is non-infectious and efficiently secretes sub-viral particles. Journal of Virology, 87 23: 13063-13069. doi:10.1128/JVI.01552-13

Natural exposure of horses to mosquito-borne flaviviruses in South-East Queensland, Australia

Prow, Natalie A., Tan, Cindy S. E., Wang, Wenqi, Hobson-Peters, Jody, Kidd. Lisa, Barton, Anita, Wright, John, Hall, Roy A. and Bielefeldt-Ohmann, Helle (2013) Natural exposure of horses to mosquito-borne flaviviruses in South-East Queensland, Australia. International Journal of Environmental Research and Public Health, 10 9: 4432-4443. doi:10.3390/ijerph10094432

An inactivated cell culture Japanese encephalitis vaccine (JEADVAX) formulated with delta inulin adjuvant provides robust heterologous protection against West Nile encephalitis via cross-protective memory B cells and neutralizing antibody

Petrovsky, Nikolai, Larena, Maximilian, Siddharthan, Venkatraman, Prow, Natalie A., Hall, Roy A., Lobigs, Mario and Morrey, John (2013) An inactivated cell culture Japanese encephalitis vaccine (JEADVAX) formulated with delta inulin adjuvant provides robust heterologous protection against West Nile encephalitis via cross-protective memory B cells and neutralizing antibody. Journal of Virology, 87 18: 10324-10333. doi:10.1128/JVI.00480-13

An interaction between the methyltransferase and RNA dependent RNA polymerase domains of the West Nile virus NS5 protein

Tan, Cindy S. E., Hobson-Peters, Jody M., Stoermer, Martin J., Fairlie, David P., Khromykh, Alexander A. and Hall, Roy A. (2013) An interaction between the methyltransferase and RNA dependent RNA polymerase domains of the West Nile virus NS5 protein. Journal of General Virology, 94 Pt. 9: 1961-1971. doi:10.1099/vir.0.054395-0

Genetic divergence among members of the Kokobera group of flaviviruses supports their separation into distinct species

May, Fiona J., Clark, David C., Pham, Kim, Diviney, Sinéad M., Williams, David T., Field, Emma J., Kuno, Goro, Chang, Gwong-Jen, Cheah, Wai Yuen, Setoh, Yin X., Prow, Natalie A., Hobson-Peters, Jody and Hall, Roy A. (2013) Genetic divergence among members of the Kokobera group of flaviviruses supports their separation into distinct species. Journal of General Virology, 94 Pt. 7: 1462-1467. doi:10.1099/vir.0.049940-0

JE-ADVAX vaccine protection against Japanese encephalitis virus mediated by memory B cells in the absence of CD8+ T cells and pre-exposure neutralizing antibody

Larena, Maximilian, Prow, Natalie A., Hall, Roy A., Petrovsky, Nikolai and Lobigs, Mario (2013) JE-ADVAX vaccine protection against Japanese encephalitis virus mediated by memory B cells in the absence of CD8+ T cells and pre-exposure neutralizing antibody. Journal of Virology, 87 8: 4395-4402. doi:10.1128/JVI.03144-12

A new insect-specific flavivirus from Northern Australia suppresses replication of West Nile Virus and Murray Valley Encephalitis Virus in co-infected mosquito cells

Hobson-Peters, Jody, Yam, Alice Wei Yee, Lu, Jennifer Wei Fei, Setoh, Yin Xiang, May, Fiona J., Kurucz, Nina, Walsh, Susan, Prow, Natalie A., Davis, Steven S., Weir, Richard, Melville, Lorna, Hunt, Neville, Webb, Richard I., Blitvich, Bradley J., Whelan, Peter and Hall, Roy A. (2013) A new insect-specific flavivirus from Northern Australia suppresses replication of West Nile Virus and Murray Valley Encephalitis Virus in co-infected mosquito cells. PLoS One, 8 2: . doi:10.1371/journal.pone.0056534

A novel bacteria-free method for generation of flavivirus infectious DNA by circular polymerase extension reaction allows accurate recapitulation of viral heterogeneity

Edmonds, Judith, van Grinsven, Erinke, Prow, Natalie, Bosco-Lauth, Angela, Brault, Aaron C., Bowen, Richard A., Hall, Roy and Khromykh, Alexander A. (2013) A novel bacteria-free method for generation of flavivirus infectious DNA by circular polymerase extension reaction allows accurate recapitulation of viral heterogeneity. Journal of Virology, 87 4: 2367-2372. doi:10.1128/JVI.03162-12

How much is too much assessment? Insight into assessment-driven student learning gains in large-scale undergraduate microbiology courses

Wang, Jack T. H., Schembri, Mark A. and Hall, Roy A. (2013) How much is too much assessment? Insight into assessment-driven student learning gains in large-scale undergraduate microbiology courses. Journal of Microbiology and Biology Education, 14 1: 12-24. doi:10.1128/jmbe.v14i1.449

Neutralizing monoclonal antibodies to the E2 protein of chikungunya virus protects against disease in a mouse model

Goh, Lucas Y. H., Hobson-Peters Jody, Prow, Natalie A., Gardner, Joy, Bielefeldt-Ohmann, Helle, Pyke, Alyssa T., Suhrbier, Andreas and Hall, Roy A. (2013) Neutralizing monoclonal antibodies to the E2 protein of chikungunya virus protects against disease in a mouse model. Clinical Immunology, 149 PB: 487-497. doi:10.1016/j.clim.2013.10.004

Identification of residues in West Nile virus premembrane protein that influence viral particle secretion and virulence

Setoh, Y. X., Prow, N. A., Hobson-Peters, J., Lobigs, M., Young, P. R., Khromykh, A. A. and Hall, R. A. (2012) Identification of residues in West Nile virus premembrane protein that influence viral particle secretion and virulence. Journal of General Virology, 93 Part 9: 1965-1975. doi:10.1099/vir.0.044453-0

Characterization of virulent West Nile virus Kunjin Strain, Australia, 2011

Frost, Melinda J., Zhang, Jing, Edmonds, Judith H., Prow, Natalie A., Gu, Xingnian, Davis, Rodney, Hornitzky, Christine, Arzey, Kathleen E., Finlaison, Deborah, Hick, Paul, Read, Andrew, Hobson-Peters, Jody, May, Fiona J., Doggett, Stephen L., Haniotis, John, Russell, Richard C., Hall, Roy A., Khromykh, Alexander A. and Kirkland, Peter D. (2012) Characterization of virulent West Nile virus Kunjin Strain, Australia, 2011. Emerging Infectious Diseases, 18 5: 792-800. doi:10.3201/eid1805.111720

Culex annulirostris (Diptera: Culicidae) host feeding patterns and Japanese encephalitis virus ecology in Northern Australia

Hall-Mendelin, Sonja, Jansen, Cassie C., Cheah, Wai Yuen, Montgomery, Brian L., Hall, Roy A., Ritchie, Scott A. and Van den Hurk, Andrew F. (2012) Culex annulirostris (Diptera: Culicidae) host feeding patterns and Japanese encephalitis virus ecology in Northern Australia. Journal of Medical Entomology, 49 2: 371-377. doi:10.1603/ME11148

Advances in arbovirus surveillance, detection and diagnosis

Hall, Roy A., Blitvich, Bradley J., Johansen, Cheryl A. and Blacksell, Stuart D. (2012) Advances in arbovirus surveillance, detection and diagnosis. Journal of Biomedicine and Biotechnology, 2012 512969.1-512969.2. doi:10.1155/2012/512969

Determinants of attenuation in the envelope protein of the flavivirus Alfuy

Prow, Natalie A., May, Fiona J., Westlake, Daniel J., Hurrelbrink, Robert J., Biron, Rebecca M., Leung, Jason Y., McMinn, Peter C., Clark, David C., Mackenzie, John S., Lobigs, Mario, Khromykh, Alexander A. and Hall, Roy A. (2011) Determinants of attenuation in the envelope protein of the flavivirus Alfuy. Journal of General Virology, 92 10: 2286-2296. doi:10.1099/vir.0.034793-0

Detection of antibodies to West Nile virus in horses, Costa Rica, 2004

Hobson-Peters, Jody, Arevalo, Carolina, Cheah, Wai Yuen, Blitvich, Bradley J., Tan, Cindy Si En, Sandis, Alexis, Araya, Luis Nazario, Hernandez, Jose Luis, Toye, Phillip and Hall, Roy A. (2011) Detection of antibodies to West Nile virus in horses, Costa Rica, 2004. Vector-Borne and Zoonotic Diseases, 11 8: 1081-1084. doi:10.1089/vbz.2010.0198

Expression of recombinant West Nile virus prM protein fused to an affinity tag for use as a diagnostic antigen

Setoh, Y. X., Hobson-Peters, J., Prow, N. A., Young, P. R. and Hall, R. A. (2011) Expression of recombinant West Nile virus prM protein fused to an affinity tag for use as a diagnostic antigen. Journal of Virological Methods, 175 1: 20-27. doi:10.1016/j.jviromet.2011.04.010

Virulence determinants between New York 99 and Kunjin strains of West Nile virus

Audsley, Michelle, Edmonds, Judith, Liu, Wenjun, Mokhonov, Vlad, Mokhonova, Ekaterina, Melian, Ezequeil Balmori, Prow, Natalie, Hall, Roy A. and Khromykh, Alexander A. (2011) Virulence determinants between New York 99 and Kunjin strains of West Nile virus. Virology, 414 1: 63-73. doi:10.1016/j.virol.2011.03.008

An ELISA to detect serum antibodies to the salivary gland toxin of Ixodes holocyclus Neumann in dogs and rodents

Hall-Mendelin, S., O'Donoghue, P., Atwell, R., Lee, R. and Hall, R.A. (2011) An ELISA to detect serum antibodies to the salivary gland toxin of Ixodes holocyclus Neumann in dogs and rodents. Journal of Parasitological Research, 2011 Article number 283416. doi:10.1155/2011/283416

Expecting the unexpected: Nucleic acid-based diagnosis and discovery of emerging viruses

Barnard, Ross Thomas, Hall, Roy A. and Gould, Ernest A. (2011) Expecting the unexpected: Nucleic acid-based diagnosis and discovery of emerging viruses. Expert Reviews of Molecular Diagnostics, 11 4: 409-423. doi:10.1586/erm.11.24

Tick paralysis in Australia caused by Ixodes holocyclus Neumann

Hall-Mendelin, S., Craig, S. B., Hall, R. A., O'Donoghue, P., Atwell, R. B., Tulsiani, S. M. and Graham, G. C. (2011) Tick paralysis in Australia caused by Ixodes holocyclus Neumann. Annals of Tropical Medicine and Parasitology, 105 2: 95-106. doi:10.1179/136485911X12899838413628

Mammalian expression of functional autologous red cell agglutination reagents for use in diagnostic assays

Hobson-Peters, J, Shan, J., Hall, R. A. and Toye, P. (2010) Mammalian expression of functional autologous red cell agglutination reagents for use in diagnostic assays. Journal of Virological Methods, 168 1-2: 177-190. doi:10.1016/j.jviromet.2010.05.012

Nanopatch-targeted skin vaccination against West Nile virus and chikungunya virus in mice

Prow, Tarl W., Chen, Xianfeng, Prow, Natalie A., Fernando, Germain J. P., Tan, Cindy S. E., Raphael, Anthony P., Chang, David, Ruutu, Merja P., Jenkins, Derek W. K., Pyke, Alyssa, Crichton, Michael L., Raphaelli, Kristin, Goh, Lucas Y. H., Frazer, Ian H., Roberts, Michael S., Gardner, Joy, Khromykh, Alexander A., Suhrbier, Andreas, Hall, Roy A. and Kendall, Mark A. F. (2010) Nanopatch-targeted skin vaccination against West Nile virus and chikungunya virus in mice. Small, 6 16: 1776-1784. doi:10.1002/smll.201000331

Exploiting mosquito sugar feeding to detect mosquito-borne pathogens

Hall-Mendelin, Sonja, Ritchie, Scott A., Johansen, Cheryl A., Zborowski, Paul, Cortis, Giles, Dandridge, Scott, Hall, Roy A. and van den Hurk, Andrew F. (2010) Exploiting mosquito sugar feeding to detect mosquito-borne pathogens. Proceedings of the National Academy of Sciences of the United States of America, 107 25: 11255-11259. doi:10.1073/pnas.1002040107

An inactivated Vero cell-grown Japanese encephalitis vaccine formulated with Advax, a novel inulin-based adjuvant, induces protective neutralizing antibody against homologous and heterologous flaviviruses

Lobigs, M, Pavy, M, Hall, RA, Lobigs, P, Cooper, P, Komiya, T, Toriniwa, H and Petrovsky, N (2010) An inactivated Vero cell-grown Japanese encephalitis vaccine formulated with Advax, a novel inulin-based adjuvant, induces protective neutralizing antibody against homologous and heterologous flaviviruses. Journal of General Virology, 91 6: 1407-1417. doi:10.1099/vir.0.019190-0

NS1 ' of flaviviruses in the Japanese encephalitis virus serogroup is a product of ribosomal frameshifting and plays a role in viral neuroinvasiveness

Balmori Melian, Ezequiel, Hinzman, Edward, Nagasaki, Tomoko, Firth, Andrew E., Wills, Norma M., Nouwens, Amanda S., Blitvich, Bradley J., Leung, Jason, Funk, Anneke, Atkins, John F., Hall, Roy and Khromykh, Alexander A. (2010) NS1 ' of flaviviruses in the Japanese encephalitis virus serogroup is a product of ribosomal frameshifting and plays a role in viral neuroinvasiveness. Journal of Virology, 84 3: 1641-1647. doi:10.1128/JVI.01979-09

Molecular phylogeny of Edge Hill virus supports its position in the yellow fever virus group and identifies a new genetic variant

Macdonald, Joanne, Poidinger, Michael, Mackenzie, John S., Russell, Richard C., Doggett, Stephen, Broom, Annette K., Phillips, Debra, Potamski, Joseph, Gard, Geoff, Whelan, Peter, Weir, Richard, Young, Paul R., Gendle, Debra, Maher, Sheryl, Barnard, Ross T. and Hall, Roy A. (2010) Molecular phylogeny of Edge Hill virus supports its position in the yellow fever virus group and identifies a new genetic variant. Evolutionary Bioinformatics, 6 6: 91-96.

Monoclonal antibodies to the West Nile virus NS5 protein map to linear and conformational epitopes in the methyltransferase and polymerase domains

Hall, Roy A., Tan, Si En, Selisko, Barbara, Slade, Rachael, Hobson-Peters, Jody, Canard, Bruno, Hughes, Megan, Leung, Jason Y., Balmori-Melian, Ezequiel, Hall-Mendelin, Sonja, Pham, Kim B., Clark, David C., Prow, Natalie A. and Khromykh, Alexander A. (2009) Monoclonal antibodies to the West Nile virus NS5 protein map to linear and conformational epitopes in the methyltransferase and polymerase domains. Journal of General Virology, 90 12: 2912-2922. doi:10.1099/vir.0.013805-0

Arboviruses isolated from mosquitoes collected from urban and peri-urban areas of eastern Australia

Jansen, Cassie C., Prow, Natalie A., Webb, Cameron E., Hall, Roy A., Pyke, Alyssa T., Harrower, Bruce J., Pritchard, Ian I., Zborowski, Paul, Ritchie, Scott A., Russell, Richard C. and van den Hurk, Andrew F. (2009) Arboviruses isolated from mosquitoes collected from urban and peri-urban areas of eastern Australia. Journal of the American Mosquito Control Association, 25 3: 272-278. doi:10.2987/09-5908.1

West Nile virus: The current climate

Prow, Natalie A., Khromykh, Alexander A. and Hall, Roy A. (2009) West Nile virus: The current climate. Medical Laboratory Observer, 41 4: 10-15.

A highly structured,nuclease-resistant, noncoding RNA produced by flaviviruses is required for pathogenicity

Pijlman, Gorben P., Funk, Anneke, Kondratieva, Natasha, Leung, Jason, Torres, Shessy, Van der Aa, Lieke, Liu, Wen Jun, Palmenberg, Ann C., Shi, Pei-Yong, Hall, Roy A. and Khromykh, Alexander A. (2008) A highly structured,nuclease-resistant, noncoding RNA produced by flaviviruses is required for pathogenicity. Cell Host and Microbe, 4 6: 579-591. doi:10.1016/j.chom.2008.10.007

A glycosylated peptide in the West Nile virus envelope protein is immunogenic during equine infection

Hobson-Peters, Jody, Toye, Philip, Sanchez, Melissa D., Bossart, Katharine N., Wang, Lin-Fa, Clark, David C., Cheah, Wai Yuen and Hall, Roy A. (2008) A glycosylated peptide in the West Nile virus envelope protein is immunogenic during equine infection. Journal of General Virology, 89 12: 3063-3072. doi:10.1099/vir.0.2008/003731-0

Single-round infectious particles enhance immunogenicity of a DNA vaccine against West Nile virus

Chang, David C., Liu, Wen J., Anraku, Itaru, Clark, David C., Pollitt, Christopher C., Suhrbier, Andreas, Hall, Roy A. and Khromykh, Alexander A. (2008) Single-round infectious particles enhance immunogenicity of a DNA vaccine against West Nile virus. Nature Biotechnology, 26 5: 571-577. doi:10.1038/nbt1400

Universal primers that amplify RNA from all three flavivirus subgroups

Maher-Sturgess, Sheryl L., Forrester, Naomi L., Wayper, Paul J., Gould, Ernest A., Hall, Roy A., Barnard, Ross T. and Gibbs, Mark J. (2008) Universal primers that amplify RNA from all three flavivirus subgroups. Virology Journal, 5 16: 1-10. doi:10.1186/1743-422X-5-16

Drug evaluation: ChimeriVax-West Nile vaccine

Hall, RA and Khromykh, AA (2007) Drug evaluation: ChimeriVax-West Nile vaccine. Current Opinion In Molecular Therapeutics, 9 5: 498-504.

Genetic and phenotypic differences between isolates of Murray Valley encephalitis virus in Western Australia, 1972-2003

Johansen, CA, Susai, V, Hall, RA, Mackenzie, JS, Clark, DC, May, FJ, Hemmerter, S, Smith, DW and Broom, AK (2007) Genetic and phenotypic differences between isolates of Murray Valley encephalitis virus in Western Australia, 1972-2003. Virus Genes, 35 2: 147-154. doi:10.1007/s11262-007-0091-2

Mosquito feeding patterns and natural infection of vertebrates with Ross River and Barmah Forest viruses in Brisbane, Australia

Kay, Brian H., Boyd, Ann Marie, Ryan, Peter A. and Hall, Roy A. (2007) Mosquito feeding patterns and natural infection of vertebrates with Ross River and Barmah Forest viruses in Brisbane, Australia. American Journal of Tropical Medicine And Hygiene, 76 3: 417-423.

In situ reactions of monoclonal antibodies with a viable mutant of Murray Valley encephalitis virus reveal an absence of dimeric NS1 protein

Clark, D. C., Lobigs, M., Lee, E., Howard, M. J., Clark, K., Blitvich, B. J. and Hall, R. A. (2007) In situ reactions of monoclonal antibodies with a viable mutant of Murray Valley encephalitis virus reveal an absence of dimeric NS1 protein. Journal of General Virology, 88 4: 1175-1183. doi:10.1099/vir.0.82609-0

West Nile and St. Louis encephalitis virus antibody seroconversion, prevalence, and persistence in naturally infected pig-tailed macaques (Macaca nemestrina)

Hukkanen, Renee R., Liggitt, H. Denny, Kelley, Stephen T., Grant, Richard, Anderson, David M., Hall, Roy A., Tesh, Robert B., Travassos DaRosa, Amelia P. and Bielefeldt-Ohmann, Helle (2006) West Nile and St. Louis encephalitis virus antibody seroconversion, prevalence, and persistence in naturally infected pig-tailed macaques (Macaca nemestrina). Clinical And Vaccine Immunology, 13 6: 711-714. doi:10.1128/CVI.00031-06

A single amino acid substitution in the west nile virus nonstructural protein NS2A disables its ability to inhibit alpha/beta interferon induction and attenuates virus virulence in mice

Liu, Wen Jun, Wang, Xiang Ju, Clark, David C., Lobigs, Mario, Hall, Roy A. and Khromykh, Alexander A. (2006) A single amino acid substitution in the west nile virus nonstructural protein NS2A disables its ability to inhibit alpha/beta interferon induction and attenuates virus virulence in mice. Journal of Virology, 80 5: 2396-2404. doi:10.1128/JVI.80.5.2396-2404.2006

Comparison of commercially available and novel West Nile virus immunoassays for detection of seroconversion in pig-tailed macaques (Macaca nemestrina)

Hukkanen, Renee R., Liggitt, Denny H., Kelley, Stephen T., Grant, Richard, Anderson, David, Beaty, Barry J., Marlenee, Nicole L., Hall, Roy A. and Bielefeldt-Ohmann, Helle (2006) Comparison of commercially available and novel West Nile virus immunoassays for detection of seroconversion in pig-tailed macaques (Macaca nemestrina). Comparative Medicine, 56 1: 46-54.

Biological, antigenic and phylogenetic characterization of the flavivirus Alfuy

May, Fiona J., Lobigs, Mario, Lee, Eva, Gendle, Debra J., Mackenzie, John S., Broom, Annette K., Conlan, James V. and Hall, Roy A. (2006) Biological, antigenic and phylogenetic characterization of the flavivirus Alfuy. Journal of General Virology, 87 2: 329-337. doi:10.1099/vir.0.81252-0

Epitope-blocking enzyme-linked immunosorbent assay for detection of antibodies to Ross River virus in vertebrate sera

Oliveira, N. M. M., Broom, A. K., Mackenzie, J. S., Smith, D. W., Lindsay, M. D. A., Kay, B. H. and Hall, R. A. (2006) Epitope-blocking enzyme-linked immunosorbent assay for detection of antibodies to Ross River virus in vertebrate sera. Clinical And Vaccine Immunology, 13 7: 814-817. doi:10.1128/CVI.00035-06

NS1 protein secretion during the acute phase of West Nile virus infection

Macdonald, Joanne, Tonry, Jessica, Hall, Roy A., Williams, Brent, Palacios, Gustavo, Ashok, Mundrigi S., Jabado, Omar, Clark, David, Tesh, Robert B., Briese, Thomas and Lipkin, W. Ian (2005) NS1 protein secretion during the acute phase of West Nile virus infection. Journal of Virology, 79 22: 13924-13933. doi:10.1128/JVI.79.22.13924-13933.2005

Identification of new flaviviruses in the Kokobera virus complex

Nisbet, D. J., Lee, K. J., van den Hurk, A. F., Johansen, C. A., Kuno, G., Chang, G. J. J., Mackenzie, J. S., Ritchie, S. A. and Hall, R. A. (2005) Identification of new flaviviruses in the Kokobera virus complex. Journal of General Virology, 86 Pt 1: 121-124. doi:10.1099/vir.0.80381-0

Common E protein determinants for attenuation of glycosaminoglycan-binding variants of Japanese encephalitis and West Nile viruses

Lee, Eva, Hall, Roy A. and Lobigs, Mario (2004) Common E protein determinants for attenuation of glycosaminoglycan-binding variants of Japanese encephalitis and West Nile viruses. Journal of Virology, 78 15: 8271-8280. doi:10.1128/JVI.78.15.8271-8280.2004

West Nile virus vaccines

Hall, Roy A. and Khromykh, Alexander A. (2004) West Nile virus vaccines. Expert Opinion On Biological Therapy, 4 8: 1295-1305. doi:10.1517/14712598.4.8.1295

Antigenic and genetic typing of Whataroa viruses in Australia

Saleh, S. M., Poidinger, M., MacKenzie, J. S., Broom, A. K., Lindsay, M. D. A., Russell, R. C., Cloonan, M. J., Calisher, C. H., Burgess, G. W. and Hall, R. A. (2004) Antigenic and genetic typing of Whataroa viruses in Australia. American Journal of Tropical Medicine And Hygiene, 71 3: 262-267.

Flavivirus isolations from mosquitoes collected from Saibai Island in the Torres Strait, Australia, during an incursion of Japanese encephalitis virus

Johansen, C. A., Nisbet, D. J., Foley, P. N., van den Hurk, A. F., Hall, R. A., Mackenzie, J. S. and Ritchie, S. A. (2004) Flavivirus isolations from mosquitoes collected from Saibai Island in the Torres Strait, Australia, during an incursion of Japanese encephalitis virus. Medical And Veterinary Entomology, 18 3: 281-287. doi:10.1111/j.0269-283X.2004.00510.x

Regulation of antigen processing and presentation molecules in West Nile virus-infected human skin fibroblasts

Arnold, S. J., Osvath, S. R., Hall, R. A., King, N. J. C. and Sedger, L. M. (2004) Regulation of antigen processing and presentation molecules in West Nile virus-infected human skin fibroblasts. Virology, 324 2: 286-296. doi:10.1016/j.virol.2004.03.036

Cross-protective and Infection-Enhancing Immunity in Mice Vaccinated Against Flaviviruses Belonging to the Japanese Encephalitis Virus Serocomplex

Lobigs, Mario, Pavy, Megan and Hall, Roy A. (2003) Cross-protective and Infection-Enhancing Immunity in Mice Vaccinated Against Flaviviruses Belonging to the Japanese Encephalitis Virus Serocomplex. Vaccine, 21 15: 1572-1579. doi:10.1016/S0264-410X(02)00743-0

West Nile virus: Is there a message for Australia

Mackenzie, John S., Smith, David W. and Hall, Roy A. (2003) West Nile virus: Is there a message for Australia. Medical Journal of Australia, 178 1: 5-6.

Antibody-dependent enhancement of Murray Valley encephalitis virus virulence in mice

Wallace, M. J., Smith, D. W., Broom, A. K., Mackenzie, J. S., Hall, R. A., Shellam, G. R. and McMinn, P. C. (2003) Antibody-dependent enhancement of Murray Valley encephalitis virus virulence in mice. Journal of General Virology, 84 7: 1723-1728. doi:10.1099/vir.0.18980-0

Complete genomic sequence of the Australian south-west genotype of Sindbis virus: Comparisons with other Sindbis strains and identification of a unique deletion in the 3 '-untranslated region

Saleh, S. M., Poidinger, M., Mackenzie, J. S., Broom, A. K., Lindsay, M. D. and Hall, R. A. (2003) Complete genomic sequence of the Australian south-west genotype of Sindbis virus: Comparisons with other Sindbis strains and identification of a unique deletion in the 3 '-untranslated region. Virus Genes, 26 3: 317-327. doi:10.1023/A:1024407516352

DNA vaccine coding for the full-length infectious Kunjin virus RNA protects mice against the New York strain of West Nile virus

Hall, R. A., Nisbet, D. J., Pham, K.B., Pyke, A. T., Smith, G. A. and Khromykh, A. (2003) DNA vaccine coding for the full-length infectious Kunjin virus RNA protects mice against the New York strain of West Nile virus. Proceedings of The National Academy of Sciences of The United States of America, 100 18: 10460-10464. doi:10.1073/pnas.1834270100

Detection of West Nile Virus Infection in birds in the United States by blocking ELISA and immunohistochemistry

Jozan, M., Evans, R., McLean, R., Hall, R., Tangredi, B., Reed, L. and Scott, J. (2003) Detection of West Nile Virus Infection in birds in the United States by blocking ELISA and immunohistochemistry. Vector-borne And Zoonotic Diseases, 3 3: 99-110. doi:10.1089/153036603768395799

Enhanced vector competence of Aedes aegypti (Diptera : Culicidae) from the torres strait compared with mainland Australia for dengue 2 and 4 viruses

Knox, T. B., Kay, B. H., Hall, R. A. and Ryan, P. A. (2003) Enhanced vector competence of Aedes aegypti (Diptera : Culicidae) from the torres strait compared with mainland Australia for dengue 2 and 4 viruses. Journal of Medical Entomology, 40 6: 950-956. doi:10.1603/0022-2585-40.6.950

Epitope-blocking enzyme-linked immunosorbent assays for detection of West Nile virus antibodies in domestic mammals

Blitvich, B. J., Bowen, R. A., Marlenee, N. L., Hall, R. A., Bunning, M. L. and Beaty, B. J. (2003) Epitope-blocking enzyme-linked immunosorbent assays for detection of West Nile virus antibodies in domestic mammals. Journal of Clinical Microbiology, 41 6: 2676-2679. doi:10.1128/JCM.41.6.2676-2679.2003

Epitope-blocking enzyme-linked immunosorbent assays for the detection of serum antibodies to West Nile virus in multiple avian species

Blitvich, B. J., Marlenee, N. L., Hall, R. A., Calisher, C. H., Bowen, R. A., Roehrig, J. T., Komar, N., Langevin, S. A. and Beaty, B. J. (2003) Epitope-blocking enzyme-linked immunosorbent assays for the detection of serum antibodies to West Nile virus in multiple avian species. Journal of Clinical Microbiology, 41 3: 1041-1047. doi:10.1128/JCM.41.3.1041-1047.2003

Field evaluation of a sentinel mosquito (Diptera : culicidae) trap system to detect Japanese encephalitis in remote Australia

Ritchie, S. A., Pyke, A. T., Smith, G. A., Northill, J. A., Hall, B. A., Van Den Hurk, A. F., Johansen, C. A., Montgomery, B. L. and MacKenzie, J. S. (2003) Field evaluation of a sentinel mosquito (Diptera : culicidae) trap system to detect Japanese encephalitis in remote Australia. Journal of Medical Entomology, 40 3: 249-252. doi:10.1603/0022-2585-40.3.249

Polymerase chain reaction tests for the identification of Ross River, Kunjin and Murray Valley encephalitis virus infections in horses

Studdert, M. J., Azoulas, J. K., Vasey, J. R., Hall, R. A., Ficorilli, N. and Huang, J. A. (2003) Polymerase chain reaction tests for the identification of Ross River, Kunjin and Murray Valley encephalitis virus infections in horses. Australian Veterinary Journal, 81 1-2: 76-80. doi:10.1111/j.1751-0813.2003.tb11438.x

Vector competence of Australian mosquitoes (Diptera : Culicidae) for Japanese encephalitis virus

van den Hurk, A. F., Nisbet, D. J., Hall, R. A., Kay, B. H., MacKenzie, J. S. and Ritchie, S. A. (2003) Vector competence of Australian mosquitoes (Diptera : Culicidae) for Japanese encephalitis virus. Journal of Medical Entomology, 40 1: 82-90. doi:10.1603/0022-2585-40.1.82

The ecology and epidemiology of Kunjin virus

Hall, R. A., Broom, A. K., Smith, D. W. and Mackenzie, J. S. (2002) The ecology and epidemiology of Kunjin virus. Current Topics in Microbiology and Immunology, 267 253-269.

Detection and stability of Japanese encephalitis virus RNA and virus viability in dead infected mosquitoes under different storage conditions

Johansen, C. A., Hall, R. A., van den Hurk, A. F., Ritchie, S. A. and Mackenzie, J. S. (2002) Detection and stability of Japanese encephalitis virus RNA and virus viability in dead infected mosquitoes under different storage conditions. American Journal of Tropical Medicine And Hygiene, 67 6: 656-661. doi:10.4269/ajtmh.2002.67.656

Detection of West Nile virus antigen in mosquitoes and avian tissues by a monoclonal antibody-based capture enzyme immunoassay

Hunt, Ann R., Hall, Roy A., Kerst, Amy J., Nasci, Roger S., Savage, Harry M., Panella, Nicholas A., Gottfried, Kristy L., Burkhalter, Kristen L. and Roehrig, John T. (2002) Detection of West Nile virus antigen in mosquitoes and avian tissues by a monoclonal antibody-based capture enzyme immunoassay. Journal of Clinical Microbiology, 40 6: 2023-2030. doi:10.1128/JCM.40.6.2023-2030.2002

Kunjin Virus: An Australian Variant of West Nile?

Hall, Roy A., Scherret, Jacqueline H. and Mackenzie, John S. (2001) Kunjin Virus: An Australian Variant of West Nile?. Annals of the New York Academy of Sciences, 951 West Nile Virus: Detection, Surveillance, And Control: 153-160. doi:10.1111/j.1749-6632.2001.tb02693.x

Biological significance of glycosylation of the envelope protein of Kunjin virus

Scherret, J., Mackenzie, J. S., Khromykh, A. and Hall, R. A. (2001) Biological significance of glycosylation of the envelope protein of Kunjin virus. Annals of the New York Academy of Sciences, 951 West Nile Virus: Detection, Surveillance, And Control: 361-363. doi:10.1111/j.1749-6632.2001.tb02719.x

Determination of the intramolecular disulfide bond arrangement and biochemical identification of the glycosylation sites of the nonstructural protein NS1 of Murray Valley encephalitis virus

Blitvich, B. J., Scanlon, D., Shiell, B. J., Mackenzie, J. S., Pham, K. and Hall, R. A. (2001) Determination of the intramolecular disulfide bond arrangement and biochemical identification of the glycosylation sites of the nonstructural protein NS1 of Murray Valley encephalitis virus. Journal of General Virology, 82 2251-2256.

Experimental infection of Australian brushtail possums, Trichosurus vulpecula (Phalangeridae : Marsupialia), with Ross River and Barmah Forest viruses by use of a natural mosquito vector system

Boyd, A. M., Hall, R. A., Gemmell, R. T. and Kay, B. H. (2001) Experimental infection of Australian brushtail possums, Trichosurus vulpecula (Phalangeridae : Marsupialia), with Ross River and Barmah Forest viruses by use of a natural mosquito vector system. American Journal of Tropical Medicine And Hygiene, 65 6: 777-782.

The Relationships between West Nile and Kunjin Viruses

Scherret, Jacqueline H., Poidinger, Michael, Mackenzie, John S., Broom, Annette K., Deubel, Vincent, Lipkin, W. Ian, Briese, Thomas, Gould, Ernest A. and Hall, Roy A. (2001) The Relationships between West Nile and Kunjin Viruses. Emerging Infectious Diseases, 7 4: 697-705. doi:10.3201/eid0704.017418

The appearance of a second genotype of Japanese encephalitis virus in the Australasian region

Pyke, A., Williams, D., Nisbet, D. J., Van Den Hurk, A. F., Johansen, C., Macdonald, J., Hall, R. A., Simmons, R.J., Mason, R.J.V., Lee, J. M., Ritchie, S. A., Smith, G. A. and Mackenzie, J. S. (2001) The appearance of a second genotype of Japanese encephalitis virus in the Australasian region. American Journal of Tropical Medicine and Hygiene, 65 6: 747-753.

The emergence of West Nile Virus - the Australian connection

Hall, R. A. (2000) The emergence of West Nile Virus - the Australian connection. Viral Immunology, 13 4: 447-461. doi:10.1089/vim.2000.13.447

The molecular epidemiology of Kokobera virus

Poidinger, Michael, Hall, Roy A., Lindsay, Michael D., Broom, Annette K. and Mackenzie, John S. (2000) The molecular epidemiology of Kokobera virus. Virus Research, 68 1: 7-13. doi:10.1016/S0168-1702(00)00143-X

Protection by Japanese encephalitis virus vaccine (02)

Hall, Roy (2000) Protection by Japanese encephalitis virus vaccine (02). ProMED, 2000 089: -20000422.0593.

Immunisation with gamma globulin to Murray Valley encephalitis virus and with an inactivated Japanese encephalitis virus vaccine as prophylaxis against Australian encephalitis: Evaluation in a mouse model

Broom, A. K., Wallace, M. J., Mackenzie, J. S., Smith, D. W. and Hall, R. A. (2000) Immunisation with gamma globulin to Murray Valley encephalitis virus and with an inactivated Japanese encephalitis virus vaccine as prophylaxis against Australian encephalitis: Evaluation in a mouse model. Journal of Medical Virology, 61 2: 259-265. doi:10.1002/(SICI)1096-9071(200006)61:2<259::AID-JMV13>3.0.CO;2-M

West Nile Virus - diagnostic reagents offer

Hall, R. A. (2000) West Nile Virus - diagnostic reagents offer. Promed, 2000 053: .

Origin of the West Nile virus responsible for an outbreak of encephalitis in the northeastern United States

Lanciotti, R. S., Roehrig, J. T., Deubel, V., Smith, J. L., Parker, M., Steele, K., Crise, B., Volpe, K. E., Crabtree, M. B., Scherret, J., Hall, R. A., Mackenzie, J. S., Cropp, C. B., Panigraphy, B., Ostlund, E., Schmitt, B., Malkinson, M., Banet, C., Weissman, J., Komar, N., Savage, H. M., Stone, W. and McNamara, T. (1999) Origin of the West Nile virus responsible for an outbreak of encephalitis in the northeastern United States. Science, 286 5448: 2333-2337. doi:10.1126/science.286.5448.2333

Genetic analysis of West Nile New York 1999 encephalitis virus

Jia, Xi-Yu, Briese, Thomas, Jordan, Ingo, Rambaut, Andrew, Chi, Han Chang, Mackenzie, John S., Hall, Roy A., Scherret, Jacqui and Lipkin, W. Ian (1999) Genetic analysis of West Nile New York 1999 encephalitis virus. Lancet, 354 9194: 1971-1972. doi:10.1016/S0140-6736(99)05384-2

Efficient trans-complementation of the flavivirus kunjin NS5 protein but not of the NS1 protein requires its coexpression with other components of the viral replicase

Khromykh, Alexander A., Sedlak, Petra L., Guyatt, Kimberley J., Hall, Roy A. and Westaway, Edwin G. (1999) Efficient trans-complementation of the flavivirus kunjin NS5 protein but not of the NS1 protein requires its coexpression with other components of the viral replicase. Journal of Virology, 73 12: 10272-10280.

Identification and analysis of truncated and elongated species of the flavivirus NS1 protein

Blitvich, Bradley J., Scanlon, Denis, Shiell, Brian J., Mackenzie, John S. and Hall, Roy A. (1999) Identification and analysis of truncated and elongated species of the flavivirus NS1 protein. Virus Research, 60 1: 67-79. doi:10.1016/S0168-1702(99)00003-9

Isolation of homologous arborvirus cultures from heterologous mixtures using limit dilution and virus-specific enzyme imunoassays

Hall, R. A., Scherret, J., Sedlak, P. L., Poidinger, M. and Mackenzie, J. S. (1999) Isolation of homologous arborvirus cultures from heterologous mixtures using limit dilution and virus-specific enzyme imunoassays. Journal of Virological Methods, 83 1-2: 189-192. doi:10.1016/S0166-0934(99)00107-X

Loss of dimerisation of the nonstructural protein NS1 of Kunjin virus delays viral replication and reduces virulence in mice, but still allows secretion of NS1

Hall, R. A., Khromykh, A. A., Mackenzie, J. M., Scherret, J., Khromykh, T. and Mackenzie, J. S. (1999) Loss of dimerisation of the nonstructural protein NS1 of Kunjin virus delays viral replication and reduces virulence in mice, but still allows secretion of NS1. Virology, 264 1: 66-75. doi:10.1006/viro.1999.9956

Dna-based and alphavirus-vectored immunisation with PrM and E proteins elicits long-lived and protective immunity against the flavivirus, Murray Valley encephalitis virus

Colombage, G., Hall, R., Pavy, M. and Lobigs, M. (1998) Dna-based and alphavirus-vectored immunisation with PrM and E proteins elicits long-lived and protective immunity against the flavivirus, Murray Valley encephalitis virus. Virology, 250 1: 151-163. doi:10.1006/viro.1998.9357

Arboviruses in the Australian region, 1990 to 1998.

Mackenzie J.S., Broom A.K., Hall R.A., Johansen C.A., Lindsay M.D., Phillips D.A., Ritchie S.A., Russell R.C. and Smith D.W. (1998) Arboviruses in the Australian region, 1990 to 1998.. Communicable diseases intelligence, 22 6: 93-100.

Identification of Australian arboviruses in inoculated cell cultures using monoclonal antibodies in ELISA

Broom, Annette K., Hall, Roy A., Johansen, Cheryl A., Oliveira, Nidia, Howard, Megan A., Lindsay, Michael D., Kay, Brian H. and Mackenzie, John S. (1998) Identification of Australian arboviruses in inoculated cell cultures using monoclonal antibodies in ELISA. Pathology, 30 3: 284-286.

Genetic stability among temporally and geographically diverse isolates of Barmah Forest virus

Poidinger, Michael, Roy, Sandrine, Hall, Roy A., Turley, Paul J., Scherret, Jacqueline H., Lindsay, Michael D., Broom, Annette K. and Mackenzie, John S. (1997) Genetic stability among temporally and geographically diverse isolates of Barmah Forest virus. American Journal of Tropical Medicine and Hygiene, 57 2: 230-234. doi:10.4269/ajtmh.1997.57.230

Molecular characterization of the Japanese encephalitis serocomplex of the flavivirus genus

Poidinger M., Hall R.A. and Mackenzie J.S. (1996) Molecular characterization of the Japanese encephalitis serocomplex of the flavivirus genus. Virology, 218 2: 417-421. doi:10.1006/viro.1996.0213

Molecular epidemiology and evolution of mosquito-borne flaviviruses and alphaviruses enzootic in Australia

Mackenzie, John S., Poidinger, Michael, Lindsay, Michael D., Hall, Roy A. and Sammels, Leanne M. (1995) Molecular epidemiology and evolution of mosquito-borne flaviviruses and alphaviruses enzootic in Australia. Virus Genes, 11 2: 225-237. doi:10.1007/BF01728662

West Nile virus (WNV) infection alters the cytokines and TLRs transcriptome profiles in rabbit PBL

Uddin, Jasim M., Suen, Willy, Prow, Natalie A, Hall, Roy A. and Bielefeldt-Ohmann, Helle (2014). West Nile virus (WNV) infection alters the cytokines and TLRs transcriptome profiles in rabbit PBL. In: SI: 2014 ICIS Abstract Issue, ICIS Conference. 2nd Annual Meeting of the International Cytokine and Interferon Society (ICIS), Melbourne, VIC Australia, (73-73). 26 - 29 October 2014. doi:10.1016/j.cyto.2014.07.194

Constructively aligning assessment and feedback - a way forward for integrating SOTL theory and practice in large-scale undergraduate classrooms

Wang, Jack, Hall, Roy and Schembri, Mark (2012). Constructively aligning assessment and feedback - a way forward for integrating SOTL theory and practice in large-scale undergraduate classrooms. In: 9th Annual International Society for the Scholarship of Teaching and Learning Conference (ISSOTL12), Hamilton, ON, Canada, (64-64). 24-27 October 2012.

Modelling the airborne spread of vectors and insect pests into northern Australia within a risk analysis framework

Eagles, Debbie, Durr, Peter, Walker, Peter, Zalucki, Myron, Hall, Roy and Deveson, Ted (2011). Modelling the airborne spread of vectors and insect pests into northern Australia within a risk analysis framework. In: Ecohealth. 1st International One Health Congress, Melbourne, Australia, (S142-S142). 14–16 February 2011.

Flavivirus subgenomic non-coding RNA is required to overcome the host innate immune response

Funk, A., Torres, S., Edmonds, J., Pijlman, G., Hall, R., Lobigs, M., Kumagai, Y., Takeuchi, O., Akira, S. and Khromykh, A. (2009). Flavivirus subgenomic non-coding RNA is required to overcome the host innate immune response. In: 5th Australian Virology Group Meeting, Lorne, Australia, (). 13-17 December 2009.

The role of flavivirus subgenomic non-coding RNA in overcoming host innate immune response

Funk, A., Torres, S., Truong, K., Edmonds, J., Pijlman, G., Hall, R., Lobigs, M., Kumagai, Y., Takeuchi, O., Akira, S. and Khromykh, A. (2009). The role of flavivirus subgenomic non-coding RNA in overcoming host innate immune response. In: TLROZ 2009: Patterns Recognition Receptors in Health and Disease, Gold Coast , Australia, (). 28-30 October 2009.

The role of subgenomic non-coding RNA in flavivirus-host interactions and viral pathogenicity

Khromykh, A., Funk, A., Torres, S., Edmonds, J., Pijlman, G., Hall, R., Lobigs, M., Kumagai, Y., Takeuchi, O. and Akira, S. (2009). The role of subgenomic non-coding RNA in flavivirus-host interactions and viral pathogenicity. In: 28th Annual Meeting of American Society for Virology, Vancouver, Canada, (). 11-15 July 2009.

Flavivirus subgenomic RNA generated by the mRNA decay machinery supports efficient virus replication

Pijlman, G.P., Funk, A., Kondratieva, N., Leung, J., Van der Aa, L., Liu, W., Palmenberg, , A.C., Hall, R.A. and Khromykh, A. (2008). Flavivirus subgenomic RNA generated by the mRNA decay machinery supports efficient virus replication. In: American Society for Virology Annual Meeting, Ithaca, USA, (). 12-16 July, 2008.

Flaviviruses employ cellular mRNA decay machinery to generate subgenomic non-coding RNA required for pathogenicity

Pijlman, G.P., Funk, A., Kondratieva, N., Leung, J., Van der Aa, L., Liu, W., Palmenberg, A.C., Hall, R.A. and Khromykh, A.A. (2008). Flaviviruses employ cellular mRNA decay machinery to generate subgenomic non-coding RNA required for pathogenicity. In: International Congress of Virology, Istanbul, Turkey, (). 10-15 Aug, 2008.

Flaviviruses employ cellular mRNA decay machinery to generate subgenomic non-coding RNA required for pathogenicity

Funk, A., Pijlman, G.P., Kondratieva, N., Leung, J., Van der Aa, L., Liu, W., Palmenberg, A.C., Shi, P.-Y., Hall, R.A. and Khromykh, A. (2008). Flaviviruses employ cellular mRNA decay machinery to generate subgenomic non-coding RNA required for pathogenicity. In: Arbovirus Research in Australia Meeting, Coffs Harbour, Australia, (). 15-19 Sept, 2008.

The role of small non-coding RNAs in flavivirus replication and pathogenicity

Pijlman, G.P., Funk, A., Kondratieva, N., Leung, J., Van der Aa, L., Liu, W., Palmenberg, A.C., Hall, R.A. and Khromykh, A.A. (2008). The role of small non-coding RNAs in flavivirus replication and pathogenicity. In: Society for General Microbiology Meeting, Edinburgh, Scotland, (). 31 Mar - 3 Apr, 2008.

Modulation of interferon response by West Nile

Khromykh, A, Liu, W, Wang,, Clark, D. C. J. and Hall, R A (2006). Modulation of interferon response by West Nile. In: Keystone Symposia. Keystone Symposia, Keystone, Colorado, (Abstract). 6-11 Jan, 2006.

Emergence of Japanese encephalitis virus in Australia: Epidemiological features

Mackenzie, J. S., Van Den Hurk, A. F., Johansen, C., Ritchie, S. A. and Hall, R. A. (2002). Emergence of Japanese encephalitis virus in Australia: Epidemiological features. In: The World of Microbes, XIIth International Congress of Virology. The World of Microbes, XIIth International Congress of Virology, Paris, ((Abstract)). 25 July - 1 August, 2002.

Alfuy virus: A non-pathogenic cousin of MVE?

May, F. J., Nisbet, D. J., Mackenzie, J. S. and Hall, R. A. (2001). Alfuy virus: A non-pathogenic cousin of MVE?. In: 4th Mosquito Control Association of Australia Symposium. 4th Mosquito Control Association of Australia Symposium, South Stradbroke Is, (237-241). 3-7 July, 2000.

Alfuy virus: An avirulent subtype of MVE virus?

May, F. J., Nisbet, D. J., Mackenzie, J. S. and Hall, R. A. (2001). Alfuy virus: An avirulent subtype of MVE virus?. In: Scientific International Symposium. 6th Int Symposium on Positive Strand RNA Viruses, Paris, (2-86-2-86). May, 2001.

Emerging viral diseases of South-East Asia and the Western Pacific: A brief review

Mackenzie, J. S., Chua, K. B., Daniels, P., Eaton, B. T., Field, H., Hall, R. A., Halpin, K., Johansen, C., Kirkland, P. D., Lam, S.K., Mcminn, P. C., Nisbet, D. J., Paru, R., Pyke, A. T. and Ritchie, S. A. (2001). Emerging viral diseases of South-East Asia and the Western Pacific: A brief review. In: Emerging Infectious Diseases: Proceedings of the International Conference on Emerging Infectious Diseases 2000. International Conference on Emerging Infectious Diseases 2000, Atlanta, USA, (497-504). July, 2000. doi:10.3201/eid0707.017703

Identification of a region of the flavivirus nonstructural protein 1 (NS1) involved in dimerization

Clark, D. C., Khromykh, A. A., Mackenzie, J. S. and Hall, R. A. (2001). Identification of a region of the flavivirus nonstructural protein 1 (NS1) involved in dimerization. In: 1st Australian Virology Group Meeting. 1st Australian Virology Group Meeting, Fraser Island, (P1.39-P1.39). December, 2001.

Identification of new flaviviruses of the Kokobera virus group

Nisbet, D. J., Lee, K.L., Van Den Hurk, A. F., Johansen, C., Ritchie, S. A., Mackenzie, J. S. and Hall, R. A. (2001). Identification of new flaviviruses of the Kokobera virus group. In: 1st Australian Virology Group Meeting. 1st Australian Virology Group Meeting, Fraser Island, (P1.21-P1.21). December, 2001.

Isolation of Sepik virus from Papua New Guinea

Nisbet, D. J., Hall, R. A., Johansen, C., Macdonald, J., Paru, R., Ritchie, S. A., Saleh, S., Van Den Hurk, A., Zborowski, P. and Mackenzie, J. S. (2001). Isolation of Sepik virus from Papua New Guinea. In: Programme and Abstracts, 4th Mosquito Control Association of Australia Symposium and 8th Arbovirus Research in Australia Conference. 4th Mosquito Control Association of Australia Symposium and 8th Arbovirus Research in Australia Conference, South Stradbroke Island, (263-266). 3-7 July, 2000.

Kunjin virus: An Australian variant of West Nile?

Hall, Roy A., Scherret, Jacqueline H. and Mackenzie, John S. (2001). Kunjin virus: An Australian variant of West Nile?. In: , , (153-160). .

Phage display and the study of flaviviral protein interactions

Macdonald, J., Terry, T. D., Harris, J. M., Mackenzie, J. S. and Hall, R. A. (2001). Phage display and the study of flaviviral protein interactions. In: Scientific International Symposium. 6th Int Symposium on Positive Strand RNA Viruses, Paris, (2.02-2.02). May, 2001.

Phylogenetic relationships between Kunjin and West Nile viruses

Scherret, J., Poidinger, M., Mackenzie, J. S. and Hall, R. A. (2001). Phylogenetic relationships between Kunjin and West Nile viruses. In: Programme and Abstracts, 4th Mosquito Control Association of Australia Symposium and 8th Arbovirus Research in Australia Conference. 4th Mosquito Control Association of Australia Symposium and 8th Arbovirus Research in Australia Conference, South Stradbroke Island, (349-355). 3-7 July, 2000.

The phylogeny of Edge Hill virus

Macdonald, J., Broom, A. K., Doggett, S., Mackenzie, J. S., Phillips, D. A., Poidinger, M., Russell, R.C., Young, P. R. and Hall, R. A. (2001). The phylogeny of Edge Hill virus. In: Programme and Abstracts, 4th Mosquito Control Association of Australia Symposium and 8th Arbovirus Research in Australia Conference. 4th Mosquito Control Association of Australia Symposium and 8th Arbovirus Research in Australia Conference, South Stradbroke Island, (225-230). 3-7 July, 2000.

The role of conserved RNA structures in the untranslated regions of the flavivirus genome in viral replication

Cartwright, L., Hall, R. A., Khromykh, A., Poidinger, M. and Mackenzie, J. S. (2001). The role of conserved RNA structures in the untranslated regions of the flavivirus genome in viral replication. In: Programme and abstracts, 8th Arbovirus Research in Australia Conference. 8th Arbovirus Research Symposium, Couran Cove, Qld, (36 (Abstract)). 3-7 July, 2000.

Encephalogenic flaviviruses in the Australian region and the emergence of Japanese encephalitis virus

Mackenzie, J. S., Johansen, C., Ritchie, S. A., Hanna, J. N., Phillips, D. A., Pyke, A., Smith, G. A., Hall, R. A., Nisbet, D. J., Van Den Hurk, A. F., Paru, R., Zborowski, P., Flew, S., Oakley, J. and Bockarie, M. J. (2000). Encephalogenic flaviviruses in the Australian region and the emergence of Japanese encephalitis virus. In: Abstracts, Volume 1, XVth International Congress for Tropical Medicine and Malariology. XVth International Congress for Tropical Medicine and Malariology, Cartagena de Indias, Columbia, (123). 20-25 August, 2000.

The emergence of Japanese encephalitis virus in the Australian zoogeographic region

Mackenzie, J. S., Pyke, A., Johansen, C., Ritchie, S. A., Nisbet, D. J., Smith, G. and Hall, R. A. (2000). The emergence of Japanese encephalitis virus in the Australian zoogeographic region. In: Abstracts of the International Conference on Bacterial and Viral Virulence Factors. Int Conference on Bacterial & Viral Virulence Factors, Smolenice, Slovakia, (27-27). 24-28 Sept, 2000.

Antibody mediated enhanced of Murray Valley encephalitis virus replication in mice

Wallace, M. J., Smith, D., Broom, A. K., Shellam, G. R., Mcminn, P. C., Mackenzie, J. S. and Hall, R. A. (1999). Antibody mediated enhanced of Murray Valley encephalitis virus replication in mice. In: Abstract Book, 11th International Congress of Virology. 11th International Congress of Virology, Sydney, (337). 9-13 August 1999.

Investigation of the structure and function of the flavivirus non-coding regions

Cartwright, L., Hall, R. A., Khromykh, A. A., Mackenzie, J. S. and Poidinger, M. (1999). Investigation of the structure and function of the flavivirus non-coding regions. In: Abstract Book, 11th International Congress of Virology. 11th International Congress of Virology, Sydney, (251). 9-13 August 1999.

Isolation of Japanese encephalitis virus from mosquitoes collected in the western province of Papua New Guinea

Johansen, C., Ritchie, S., Van Den Hurk, A. F., Paru, A., Zborowski, P., Drew, A., Khromykh, T., Mackenzie, J. S. and Hall, R. A. (1999). Isolation of Japanese encephalitis virus from mosquitoes collected in the western province of Papua New Guinea. In: Abstract Book, 11th International Congress of Virology. 11th International Congress of Virology, Sydney, (329). 9-13 August 1999.

Loss of dimerisation of the NS1 protein of Kunjin virus slows replication in cell culture and reduces virulence in mice

Hall, R. A., Khromykh, A. A., Poidinger, M., Scherret, J., Mackenzie, J. M., MacKenzie, J. S. and Khromykh, T. (1999). Loss of dimerisation of the NS1 protein of Kunjin virus slows replication in cell culture and reduces virulence in mice. In: Abstract Book, 11th International Congress of Virology. 11th International Congress of Virology, Sydney, (121). 9-13 August 1999.

New Sindbis-like viruses in Australia

Saleh, S., Poidinger, M., Hall, R. A., Doggett, S., Russell, R. J. and Mackenzie, J. S. (1999). New Sindbis-like viruses in Australia. In: Abstract Book. 11th International Congress of Virology. 11th International Congress of Virology, Sydney, (252). 9-13 August 1999.

The ecology of Japanese encephalitis in the Australian region

Mackenzie, J. S., Johansen, C., Hanna, J. N., Ritchie, S., Phillips, D. A., Hall, R. A., Van Den Hurk, A. F., Paru, A. and Melrose, W. (1999). The ecology of Japanese encephalitis in the Australian region. In: Programme and Abstracts of the Joint Annual Scientific Meeting, The Australasian Society for Infectious Diseases and The Australasian College of Tropical Medicine. Joint Annual Scientific Meeting, The Australasian Society for Infectious Diseases and The Australase, Cairns, Qld, (1). 17-21 April 1999.

The effect of glycoslation of the envelope protein in Kujin replication and pathogenesis

Scherret, J., Khromykh, A. A., Calvert, A. E., Mackenzie, J. S. and Hall, R. A. (1999). The effect of glycoslation of the envelope protein in Kujin replication and pathogenesis. In: Abstract Book, 11th International Congress of Virology. 11th International Congress of Virology, Sydney, (252). 9-13 August 1999.

Use of monoclonal antibodies in an epitope blocking assay to detect Hendra virus-specific antibodies in sera of infected animals

Pham, B. K., Hall, R. A., Halpin, K., Eaton, B. T., Wang, L. and Mackenzie, J. S. (1999). Use of monoclonal antibodies in an epitope blocking assay to detect Hendra virus-specific antibodies in sera of infected animals. In: Abstract Book, 11th International Congress of Virology. 11th International Congress of Virology, Sydney, (186). 9-13 August 1999.