The University of Queensland

Grass to glass: better beer through proteomics

Kerr, Edward D., Fox, Glen P. and Schulz, Benjamin L. (2021). Grass to glass: better beer through proteomics. Comprehensive Foodomics. (pp. 407-416) Amsterdam, Netherlands: Elsevier. doi: 10.1016/b978-0-08-100596-5.22869-2

Data-independent acquisition for yeast glycoproteomics

Zacchi, Lucía F. and Schulz, Benjamin L. (2019). Data-independent acquisition for yeast glycoproteomics. Yeast systems biology. (pp. 191-202) New York, NY USA: Humana Press. doi: 10.1007/978-1-4939-9736-7_11

Sample preparation for proteomic analysis of Neisseria meningitidis

Schulz, Benjamin L. (2019). Sample preparation for proteomic analysis of Neisseria meningitidis. Neisseria meningitidis: methods and protocols. (pp. 105-112) New York, NY, United States: Humana. doi: 10.1007/978-1-4939-9202-7_7

Beyond the sequon: sites of N-Glycosylation

Schulz, Benjamin Luke (2012). Beyond the sequon: sites of N-Glycosylation. Glycosylation. (pp. 21-40) edited by Stefana Petrescu. Rijeka, Croatia: InTech. doi: 10.5772/50260

Modulation of endoplasmic reticulum stress response pathways by respiratory viruses

Macauslane, Kyle L., Pegg, Cassandra L., Short, Kirsty R. and Schulz, Benjamin L. (2023). Modulation of endoplasmic reticulum stress response pathways by respiratory viruses. Critical Reviews in Microbiology, 1-19. doi: 10.1080/1040841x.2023.2274840

Covariance Clustering: Modelling Covariance in Designed Experiments When the Number of Variables is Greater than Experimental Units

Forknall, Clayton R., Verbyla, Arūnas P., Nazarathy, Yoni, Yousif, Adel, Osama, Sarah, Jones, Shirley H., Kerr, Edward, Schulz, Benjamin L., Fox, Glen P. and Kelly, Alison M. (2023). Covariance Clustering: Modelling Covariance in Designed Experiments When the Number of Variables is Greater than Experimental Units. Journal of Agricultural, Biological and Environmental Statistics. doi: 10.1007/s13253-023-00574-x

Proteomics and Metabolomics Reveal that an Abundant α-Glucosidase Drives Sorghum Fermentability for Beer Brewing

Kerr, Edward D., Fox, Glen P. and Schulz, Benjamin L. (2023). Proteomics and Metabolomics Reveal that an Abundant α-Glucosidase Drives Sorghum Fermentability for Beer Brewing. Journal of Proteome Research, 22 (11), 3596-3606. doi: 10.1021/acs.jproteome.3c00436

High-Frequency Changes in Pilin Glycosylation Patterns during <i>Neisseria meningitidis</i> Serogroup a Meningitis Outbreaks in the African Meningitis Belt

Jen, Freda E.-C., Abrahams, Jodie L., Schulz, Benjamin L., Lamelas, Araceli, Pluschke, Gerd and Jennings, Michael P. (2023). High-Frequency Changes in Pilin Glycosylation Patterns during Neisseria meningitidis Serogroup a Meningitis Outbreaks in the African Meningitis Belt. ACS Infectious Diseases, 9 (8), 1451-1457. doi: 10.1021/acsinfecdis.3c00149

Structure and antigenicity of divergent Henipavirus fusion glycoproteins

Isaacs, Ariel, Low, Yu Shang, Macauslane, Kyle L., Seitanidou, Joy, Pegg, Cassandra L., Cheung, Stacey T. M., Liang, Benjamin, Scott, Connor A. P., Landsberg, Michael J., Schulz, Benjamin L., Chappell, Keith J., Modhiran, Naphak and Watterson, Daniel (2023). Structure and antigenicity of divergent Henipavirus fusion glycoproteins. Nature Communications, 14 (1) 3577, 1-10. doi: 10.1038/s41467-023-39278-8

Application of quantitative proteomics to discover biomarkers for tick resistance in cattle

Raza, Ali, Schulz, Benjamin L., Nouwens, Amanda, Naseem, Muhammad Noman, Kamran, Muhammad, Mantilla Valdivieso, Emily F., Kerr, Edward D., Constantinoiu, Constantin, Jonsson, Nicholas N., James, Peter and Tabor, Ala E. (2023). Application of quantitative proteomics to discover biomarkers for tick resistance in cattle. Frontiers in Immunology, 14 1091066. doi: 10.3389/fimmu.2023.1091066

Glycosylation and the global virome

Pegg, Cassandra L., Schulz, Benjamin L., Neely, Benjamin A., Albery, Gregory F. and Carlson, Colin J. (2023). Glycosylation and the global virome. Molecular Ecology, 32 (1), 37-44. doi: 10.1111/mec.16731

CRISPR-knockout of β-kafirin in sorghum does not recapitulate the grain quality of natural mutants

Massel, Karen, Hintzsche, Jessica, Restall, Jemma, Kerr, Edward D., Schulz, Benjamin L. and Godwin, Ian D. (2022). CRISPR-knockout of β-kafirin in sorghum does not recapitulate the grain quality of natural mutants. Planta, 257 (1) 8, 1-14. doi: 10.1007/s00425-022-04038-3

Pasting properties of high-amylose wheat in conventional and high-temperature Rapid Visco Analyzer: molecular contribution of starch and gluten proteins

Li, Hai-Teng, Kerr, Edward D., Schulz, Benjamin L., Gidley, Michael J. and Dhital, Sushil (2022). Pasting properties of high-amylose wheat in conventional and high-temperature Rapid Visco Analyzer: molecular contribution of starch and gluten proteins. Food Hydrocolloids, 131 107840, 1-10. doi: 10.1016/j.foodhyd.2022.107840

Metabolomics of non-saccharomyces yeasts in fermented beverages

Ellis, Daniel J., Kerr, Edward D., Schenk, Gerhard and Schulz, Benjamin L. (2022). Metabolomics of non-saccharomyces yeasts in fermented beverages. Beverages, 8 (3) 41, 1-14. doi: 10.3390/beverages8030041

Proteomics and glycoproteomics of beer and wine

Liu, Shulei, Kerr, Edward D., Pegg, Cassandra L. and Schulz, Benjamin L. (2022). Proteomics and glycoproteomics of beer and wine. Proteomics, 22 (15-16) 2100329, 1-11. doi: 10.1002/pmic.202100329

Recent advances in the production of recombinant factor IX: bioprocessing and cell engineering

Beauglehole, Aiden C, Roche Recinos, Dinora, Pegg, Cassandra L, Lee, Yih Yean, Turnbull, Victor, Herrmann, Susann, Marcellin, Esteban, Howard, Christopher B and Schulz, Benjamin L (2022). Recent advances in the production of recombinant factor IX: bioprocessing and cell engineering. Critical Reviews in Biotechnology, 43 (3), 1-19. doi: 10.1080/07388551.2022.2036691

Identification and characterisation of sPEPs in Cryptococcus neoformans

Erpf, Paige E., Chua, Sheena M.H., Phung, Toan K., Kerr, Edward D., Rothnagel, Joseph A., Schulz, Benjamin L. and Fraser, James A. (2022). Identification and characterisation of sPEPs in Cryptococcus neoformans. Fungal Genetics and Biology, 160 103688, 103688. doi: 10.1016/j.fgb.2022.103688

Extended characterisation of five archival tick-borne viruses provides insights for virus discovery in Australian ticks

O’Brien, Caitlin A., Huang, Bixing, Warrilow, David, Hazlewood, Jessamine E., Bielefeldt-Ohmann, Helle, Hall-Mendelin, Sonja, Pegg, Cassandra L., Harrison, Jessica J., Paramitha, Devina, Newton, Natalee D., Schulz, Benjamin L., Suhrbier, Andreas, Hobson-Peters, Jody and Hall, Roy A. (2022). Extended characterisation of five archival tick-borne viruses provides insights for virus discovery in Australian ticks. Parasites and Vectors, 15 (1) 59, 59. doi: 10.1186/s13071-022-05176-z

Fine-tuning the spike: role of the nature and topology of the glycan shield in the structure and dynamics of the SARS-CoV-2 S

Harbison, Aoife M., Fogarty, Carl A., Phung, Toan K., Satheesan, Akash, Schulz, Benjamin L. and Fadda, Elisa (2022). Fine-tuning the spike: role of the nature and topology of the glycan shield in the structure and dynamics of the SARS-CoV-2 S. Chemical Science, 13 (2), 386-395. doi: 10.1039/d1sc04832e

Author correction: community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis

Kawahara, Rebeca, Chernykh, Anastasia, Alagesan, Kathirvel, Bern, Marshall, Cao, Weiqian, Chalkley, Robert J., Cheng, Kai, Choo, Matthew S., Edwards, Nathan, Goldman, Radoslav, Hoffmann, Marcus, Hu, Yingwei, Huang, Yifan, Kim, Jin Young, Kletter, Doron, Liquet, Benoit, Liu, Mingqi, Mechref, Yehia, Meng, Bo, Neelamegham, Sriram, Nguyen-Khuong, Terry, Nilsson, Jonas, Pap, Adam, Park, Gun Wook, Parker, Benjamin L., Pegg, Cassandra L., Penninger, Josef M., Phung, Toan K., Pioch, Markus ... Thaysen-Andersen, Morten (2021). Author correction: community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis. Nature Methods, 19 (1), 130-130. doi: 10.1038/s41592-021-01368-0

The post-translational modification landscape of commercial beers

Kerr, Edward D., Caboche, Christopher H., Pegg, Cassandra L., Phung, Toan K., Gonzalez Viejo, Claudia, Fuentes, Sigfredo, Howes, Mark T., Howell, Kate and Schulz, Benjamin L. (2021). The post-translational modification landscape of commercial beers. Scientific Reports, 11 (1) 15890, 15890. doi: 10.1038/s41598-021-95036-0

Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis

Kawahara, Rebeca, Chernykh, Anastasia, Alagesan, Kathirvel, Bern, Marshall, Cao, Weiqian, Chalkley, Robert J., Cheng, Kai, Choo, Matthew S., Edwards, Nathan, Goldman, Radoslav, Hoffmann, Marcus, Hu, Yingwei, Huang, Yifan, Kim, Jin Young, Kletter, Doron, Liquet, Benoit, Liu, Mingqi, Mechref, Yehia, Meng, Bo, Neelamegham, Sriram, Nguyen-Khuong, Terry, Nilsson, Jonas, Pap, Adam, Park, Gun Wook, Parker, Benjamin L., Pegg, Cassandra L., Penninger, Josef M., Phung, Toan K., Pioch, Markus ... Thaysen-Andersen, Morten (2021). Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis. Nature Methods, 18 (11), 1304-1316. doi: 10.1038/s41592-021-01309-x

Cancer associated mutations in Sec61γ alter the permeability of the ER translocase

Witham, Christopher M., Paxman, Aleshanee L., Baklous, Lamprini, Steuart, Robert F.L., Schulz, Benjamin L. and Mousley, Carl J. (2021). Cancer associated mutations in Sec61γ alter the permeability of the ER translocase. PLoS Genetics, 17 (8) e1009780, e1009780. doi: 10.1371/journal.pgen.1009780

Biopharmaceutical quality control with mass spectrometry

Liu, Shulei and Schulz, Benjamin L (2021). Biopharmaceutical quality control with mass spectrometry. Bioanalysis, 13 (16), 1275-1291. doi: 10.4155/bio-2021-0123

TorsinA folding and N-linked glycosylation are sensitive to redox homeostasis

Honer, Jonas, Niemeyer, Katie M., Fercher, Christian, Diez Tissera, Ana L., Jaberolansar, Noushin, Jafrani, Yohaann M. A., Zhou, Chun, Caramelo, Julio J., Shewan, Annette M., Schulz, Benjamin L., Brodsky, Jeffrey L. and Zacchi, Lucía F. (2021). TorsinA folding and N-linked glycosylation are sensitive to redox homeostasis. Biochimica et Biophysica Acta. Molecular Cell Research, 1868 (9) 119073, 119073. doi: 10.1016/j.bbamcr.2021.119073

Human blood microRNA hsa-miR-21-5p induces vitellogenin in the mosquito Aedes aegypti

Perdomo, Hugo D., Hussain, Mazhar, Parry, Rhys, Etebari, Kayvan, Hedges, Lauren M., Zhang, Guangmei, Schulz, Benjamin L. and Asgari, Sassan (2021). Human blood microRNA hsa-miR-21-5p induces vitellogenin in the mosquito Aedes aegypti. Communications Biology, 4 (1) 856, 856. doi: 10.1038/s42003-021-02385-7

Proteomics reveals commitment to germination in barley seeds is marked by loss of stress response proteins and mobilisation of nutrient reservoirs

Osama, Sarah K., Kerr, Edward D., Yousif, Adel M., Phung, Toan K., Kelly, Alison M., Fox, Glen P. and Schulz, Benjamin L. (2021). Proteomics reveals commitment to germination in barley seeds is marked by loss of stress response proteins and mobilisation of nutrient reservoirs. Journal of Proteomics, 242 104221, 104221. doi: 10.1016/j.jprot.2021.104221

N-glycosylation on Oryza sativa root germin-like protein 1 is conserved but not required for stability or activity

Rubbab, Tehseen, Pegg, Cassandra L., Phung, Toan K., Nouwens, Amanda S., Yeo, K.Y. Benjamin, Zacchi, Lucia F., Muhammad, Amna, Naqvi, S.M. Saqlan and Schulz, Benjamin L. (2021). N-glycosylation on Oryza sativa root germin-like protein 1 is conserved but not required for stability or activity. Biochemical and Biophysical Research Communications, 553, 72-77. doi: 10.1016/j.bbrc.2021.03.024

Serum proteomes of Santa Gertrudis cattle before and after infestation with Rhipicephalus australis ticks

Raza, Ali, Schulz, Benjamin L., Nouwens, Amanda, Jackson, Lousie A., Piper, Emily K., James, Peter, Jonsson, Nicholas N. and Tabor, Ala E. (2021). Serum proteomes of Santa Gertrudis cattle before and after infestation with Rhipicephalus australis ticks. Parasite Immunology, 43 (7) e12836, e12836. doi: 10.1111/pim.12836

Coagulation factor IX analysis in bioreactor cell culture supernatant predicts quality of the purified product

Zacchi, Lucia F., Roche-Recinos, Dinora, Pegg, Cassandra L., Phung, Toan K., Napoli, Mark, Aitken, Campbell, Sandford, Vanessa, Mahler, Stephen M., Lee, Yih Yean, Schulz, Benjamin L. and Howard, Christopher B. (2021). Coagulation factor IX analysis in bioreactor cell culture supernatant predicts quality of the purified product. Communications Biology, 4 (1) 390, 390. doi: 10.1038/s42003-021-01903-x

Benchtop micro-mashing: high-throughput, robust, experimental beer brewing

Kerr, Edward D., Caboche, Christopher H., Josh, Peter and Schulz, Benjamin L. (2021). Benchtop micro-mashing: high-throughput, robust, experimental beer brewing. Scientific Reports, 11 (1) 1480, 1-10. doi: 10.1038/s41598-020-80442-7

Perfusion culture of Chinese Hamster Ovary cells for bioprocessing applications

MacDonald, Michael A., Nöbel, Matthias, Roche Recinos, Dinora, Martínez, Verónica S., Schulz, Benjamin L., Howard, Christopher B., Baker, Kym, Shave, Evan, Lee, Yih Yean, Marcellin, Esteban, Mahler, Stephen, Nielsen, Lars Keld and Munro, Trent (2021). Perfusion culture of Chinese Hamster Ovary cells for bioprocessing applications. Critical Reviews in Biotechnology, 42 (7), 1-17. doi: 10.1080/07388551.2021.1998821

Quantitative data independent acquisition glycoproteomics of sparkling wine

Pegg, Cassandra L., Phung, Toan K., Caboche, Christopher H, Niamsuphap, Suchada, Bern, Marshall, Howell, Kate and Schulz, Benjamin L. (2021). Quantitative data independent acquisition glycoproteomics of sparkling wine. Molecular and Cellular Proteomics, 20 100020, 1-12. doi: 10.1074/mcp.ra120.002181

The AGE receptor, OST48 drives podocyte foot process effacement and basement membrane expansion (alters structural composition)

Zhuang, Aowen, Yap, Felicia Y. T., Borg, Danielle J., McCarthy, Domenica, Fotheringham, Amelia, Leung, Sherman, Penfold, Sally A., Sourris, Karly C., Coughlan, Melinda T., Schulz, Benjamin L. and Forbes, Josephine M. (2021). The AGE receptor, OST48 drives podocyte foot process effacement and basement membrane expansion (alters structural composition). Endocrinology, Diabetes and Metabolism, 4 (3) e00278, e00278. doi: 10.1002/edm2.278

Prophage exotoxins enhance colonization fitness in epidemic scarlet fever-causing Streptococcus pyogenes

Brouwer, Stephan, Barnett, Timothy C., Ly, Diane, Kasper, Katherine J., De Oliveira, David M. P., Rivera-Hernandez, Tania, Cork, Amanda J., McIntyre, Liam, Jespersen, Magnus G., Richter, Johanna, Schulz, Benjamin L., Dougan, Gordon, Nizet, Victor, Yuen, Kwok-Yung, You, Yuanhai, McCormick, John K., Sanderson-Smith, Martina L., Davies, Mark R. and Walker, Mark J. (2020). Prophage exotoxins enhance colonization fitness in epidemic scarlet fever-causing Streptococcus pyogenes. Nature Communications, 11 (1) 5018, 5018. doi: 10.1038/s41467-020-18700-5

Starch granular protein of high-amylose wheat gives innate resistance to amylolysis

Li, Hai-Teng, Sartika, Rakhmi S., Kerr, Edward D., Schulz, Benjamin L., Gidley, Michael J. and Dhital, Sushil (2020). Starch granular protein of high-amylose wheat gives innate resistance to amylolysis. Food Chemistry, 330 127328, 127328. doi: 10.1016/j.foodchem.2020.127328

A unique relative of Rotifer birnavirus Isolated from Australian mosquitoes

O’Brien, Caitlin A., Pegg, Cassandra L., Nouwens, Amanda S., Bielefeldt-Ohmann, Helle, Huang, Bixing, Warrilow, David, Harrison, Jessica J., Haniotis, John, Schulz, Benjamin L., Paramitha, Devina, Colmant, Agathe M. G., Newton, Natalee D., Doggett, Stephen L., Watterson, Daniel, Hobson-Peters, Jody and Hall, Roy A. (2020). A unique relative of Rotifer birnavirus Isolated from Australian mosquitoes. Viruses, 12 (9) 1056, 1056. doi: 10.3390/v12091056

GlypNirO: An automated workflow for quantitative N- and O-linked glycoproteomic data analysis

Phung, Toan K, Pegg, Cassandra L and Schulz, Benjamin L (2020). GlypNirO: An automated workflow for quantitative N- and O-linked glycoproteomic data analysis. Beilstein Journal of Organic Chemistry, 16 (1), 2127-2135. doi: 10.3762/bjoc.16.180

Glycopeptide variable window SWATH for improved data independent acquisition glycoprotein analysis

Zhou, Chun and Schulz, Benjamin L. (2020). Glycopeptide variable window SWATH for improved data independent acquisition glycoprotein analysis. Analytical Biochemistry, 597 113667, 113667. doi: 10.1016/j.ab.2020.113667

Identification of novel glycosylation events on human serum-derived factor IX

Pegg, Cassandra L., Zacchi, Lucia F., Recinos, Dinora Roche, Howard, Christopher B. and Schulz, Benjamin L. (2020). Identification of novel glycosylation events on human serum-derived factor IX. Glycoconjugate Journal, 37 (4), 471-483. doi: 10.1007/s10719-020-09922-2

Development of a rapid method to assess beer foamability based on relative protein content using RoboBEER and machine learning modeling

Gonzalez Viejo, Claudia, Caboche, Christopher H., Kerr, Edward D., Pegg, Cassandra L., Schulz, Benjamin L., Howell, Kate and Fuentes, Sigfredo (2020). Development of a rapid method to assess beer foamability based on relative protein content using RoboBEER and machine learning modeling. Beverages, 6 (2) 28, 28-11. doi: 10.3390/beverages6020028

Glycoproteomic measurement of site-specific polysialylation

Pelingon, Ruby, Pegg, Cassandra L., Zacchi, Lucia F., Phung, Toan K., Howard, Christopher B., Xu, Ping, Hardy, Matthew P., Owczarek, Catherine M. and Schulz, Benjamin L. (2020). Glycoproteomic measurement of site-specific polysialylation. Analytical Biochemistry, 596 113625, 113625. doi: 10.1016/j.ab.2020.113625

Adaptation of a continuous, calorimetric kinetic assay to study the agmatinase-catalyzed hydrolytic reaction

Wilson, Liam A., Garcia, David, Pedroso, Marcelo Monteiro, Schulz, Benjamin L., Guddat, Luke W. and Schenk, Gerhard (2020). Adaptation of a continuous, calorimetric kinetic assay to study the agmatinase-catalyzed hydrolytic reaction. Analytical Biochemistry, 595 113618, 113618. doi: 10.1016/j.ab.2020.113618

Evolution for improved secretion and fitness may be the selective pressures leading to the emergence of two NDM alleles

Zalucki, Yaramah M., Jen, Freda E.-C., Pegg, Cassandra L., Nouwens, Amanda S., Schulz, Benjamin L. and Jennings, Michael P. (2020). Evolution for improved secretion and fitness may be the selective pressures leading to the emergence of two NDM alleles. Biochemical and Biophysical Research Communications, 524 (3), 555-560. doi: 10.1016/j.bbrc.2020.01.135

S-trap eliminates cell culture media polymeric surfactants for effective proteomic analysis of mammalian cell bioreactor supernatants

Zacchi, Lucia F., Roche Recinos, Dinora, Otte, Ellen, Aitken, Campbell, Hunt, Tony, Sandford, Vanessa, Lee, Yih Yean, Schulz, Benjamin L. and Howard, Christopher B. (2020). S-trap eliminates cell culture media polymeric surfactants for effective proteomic analysis of mammalian cell bioreactor supernatants. Journal of Proteome Research, 19 (5), 2149-2158. doi: 10.1021/acs.jproteome.0c00106

DIALib: an automated ion library generator for data independent acquisition mass spectrometry analysis of peptides and glycopeptides

Phung, Toan K., Zacchi, Lucia F. and Schulz, Benjamin L. (2020). DIALib: an automated ion library generator for data independent acquisition mass spectrometry analysis of peptides and glycopeptides. Molecular Omics, 16 (2), 100-112. doi: 10.1039/c9mo00125e

Neisseria meningitidis induces pathology-associated cellular and molecular changes in trigeminal Schwann cells

Delbaz, Ali, Chen, Mo, Jen, Freda E-C, Schulz, Benjamin L., Gorse, Alain-Dominique, Jennings, Michael P., St John, James A. and Ekberg, Jenny A K (2020). Neisseria meningitidis induces pathology-associated cellular and molecular changes in trigeminal Schwann cells. Infection and Immunity, 88 (4) e00955-19. doi: 10.1128/IAI.00955-19

Structural elements that modulate the substrate specificity of plant purple acid phosphatases: avenues for improved phosphorus acquisition in crops

Feder, Daniel, McGeary, Ross P., Mitić, Natasa, Lonhienne, Thierry, Furtado, Agnelo, Schulz, Benjamin L., Henry, Robert J., Schmidt, Susanne, Guddat, Luke W. and Schenk, Gerhard (2020). Structural elements that modulate the substrate specificity of plant purple acid phosphatases: avenues for improved phosphorus acquisition in crops. Plant Science, 294 110445, 110445. doi: 10.1016/j.plantsci.2020.110445

Intramembrane protease RHBDL4 cleaves oligosaccharyltransferase subunits to target them for ER-associated degradation

Knopf, Julia D., Landscheidt, Nina, Pegg, Cassandra L., Schulz, Benjamin L., Kühnle, Nathalie, Chao, Chao-Wei, Huck, Simon and Lemberg, Marius K. (2020). Intramembrane protease RHBDL4 cleaves oligosaccharyltransferase subunits to target them for ER-associated degradation. Journal of Cell Science, 133 (6) jcs243790, 1-16. doi: 10.1242/jcs.243790

The conserved C-terminus of Sss1p is required to maintain the endoplasmic reticulum permeability barrier

Witham, Christopher M., Dassanayake, Hasindu G., Paxman, Aleshanee L., Stevens, Kofi L.P., Baklous, Lamprini, White, Paris F., Black, Amy L., Steuart, Robert F.L., Stirling, Colin J., Schulz, Benjamin L. and Mousley, Carl J. (2020). The conserved C-terminus of Sss1p is required to maintain the endoplasmic reticulum permeability barrier. Journal of Biological Chemistry, 295 (7), 2125-2134. doi: 10.1074/jbc.RA119.010378

Phase-variable glycosylation in nontypeable Haemophilus influenzae

Elango, Danila and Schulz, Benjamin L. (2019). Phase-variable glycosylation in nontypeable Haemophilus influenzae. Journal of Proteome Research, 19 (1) acs.jproteome.9b00657, 464-476. doi: 10.1021/acs.jproteome.9b00657

Proteomics recapitulates ovarian proteins relevant to puberty and fertility in Brahman heifers (Bos indicus L.)

Tahir, Muhammad S., Nguyen, Loan T., Schulz, Benjamin L., Boe-Hansen, Gry A., Thomas, Milton G., Moore, Stephen S., Lau, Li Yieng and Fortes, Marina R S (2019). Proteomics recapitulates ovarian proteins relevant to puberty and fertility in Brahman heifers (Bos indicus L.). Genes, 10 (11) 923, 923. doi: 10.3390/genes10110923

The meningococcal vaccine antigen GNA2091 is an analogue of YraP and plays key roles in outer membrane stability and virulence

Seib, Kate L., Haag, Andreas F., Oriente, Francesca, Fantappie, Laura, Borghi, Sara, Semchenko, Evgeny A., Schulz, Benjamin L., Ferlicca, Francesca, Taddei, Anna Rita, Giuliani, Marzia M., Pizza, Mariagrazia and Delany, Isabel (2019). The meningococcal vaccine antigen GNA2091 is an analogue of YraP and plays key roles in outer membrane stability and virulence. Faseb Journal, 33 (11), 12324-12335. doi: 10.1096/fj.201900669R

Globally elevating the AGE clearance receptor, OST48, does not protect against the development of diabetic kidney disease, despite improving insulin secretion

Zhuang, Aowen, Yap, Felicia Y. T., McCarthy, Domenica, Leung, Chris, Sourris, Karly C., Penfold, Sally A., Thallas-Bonke, Vicki, Coughlan, Melinda T., Schulz, Benjamin L. and Forbes, Josephine M. (2019). Globally elevating the AGE clearance receptor, OST48, does not protect against the development of diabetic kidney disease, despite improving insulin secretion. Scientific Reports, 9 (1) 13664, 13664. doi: 10.1038/s41598-019-50221-0

Post-translational modifications drive protein stability to control the dynamic beer brewing proteome

Kerr, Edward D., Caboche, Christopher H. and Schulz, Benjamin L. (2019). Post-translational modifications drive protein stability to control the dynamic beer brewing proteome. Molecular and Cellular Proteomics, 18 (9), 1721-1731. doi: 10.1074/mcp.ra119.001526

The intrinsic and regulated proteomes of barley seeds in response to fungal infection

Kerr, Edward D., Phung, Toan K., Caboche, Christopher H., Fox, Glen P., Platz, Greg J. and Schulz, Benjamin L. (2019). The intrinsic and regulated proteomes of barley seeds in response to fungal infection. Analytical Biochemistry, 580, 30-35. doi: 10.1016/j.ab.2019.06.004

Proteomics reveals profound metabolic changes in the alcohol use disorder brain

Enculescu, Charmaine, Kerr, Edward D., Yeo, K. Y. Benjamin, Schenk, Gerhard, Fortes, Marina R. S. and Schulz, Benjamin L. (2019). Proteomics reveals profound metabolic changes in the alcohol use disorder brain. ACS Chemical Neuroscience, 10 (5), 2364-2373. doi: 10.1021/acschemneuro.8b00660

The role of thermostable proteinaceous α-amylase inhibitors in slowing starch digestion in pasta

Zou, Wei, Schulz, Benjamin L., Tan, Xinle, Sissons, Mike, Warren, Frederick J., Gidley, Michael J. and Gilbert, Robert G. (2019). The role of thermostable proteinaceous α-amylase inhibitors in slowing starch digestion in pasta. Food Hydrocolloids, 90, 241-247. doi: 10.1016/j.foodhyd.2018.12.023

A comparative proteomic analysis of Desulfovibrio vulgaris Hildenborough in response to the antimicrobial agent free nitrous acid

Gao, Shu-Hong, Ho, Jun Yuan, Fan, Lu, Nouwens, Amanda, Hoelzle, Robert D., Schulz, Benjamin, Guo, Jianhua, Zhou, Jizhong, Yuan, Zhiguo and Bond, Philip L. (2019). A comparative proteomic analysis of Desulfovibrio vulgaris Hildenborough in response to the antimicrobial agent free nitrous acid. Science of The Total Environment, 672, 625-633. doi: 10.1016/j.scitotenv.2019.03.442

Increasing protein content and digestibility in sorghum grain with a synthetic biology approach

Liu, Guoquan, Gilding, Edward K., Kerr, Edward D., Schulz, Benjamin L., Tabet, Basam, Hamaker, Bruce R. and Godwin, Ian D. (2019). Increasing protein content and digestibility in sorghum grain with a synthetic biology approach. Journal of Cereal Science, 85, 27-34. doi: 10.1016/j.jcs.2018.11.001

Magnesium transporter 1 (MAGT1) deficiency causes selective defects in N-linked glycosylation and expression of immune-response genes

Matsuda-Lennikov, Mami, Biancalana, Matthew, Zou, Juan, Ravell, Juan C., Zheng, Lixin, Kanellopoulou, Chrysi, Jiang, Ping, Notarangelo, Giulia, Jing, Huie, Masutani, Evan, Oler, Andrew J., Olano, Lisa Renee, Schulz, Benjamin L. and Lenardo, Michael J. (2019). Magnesium transporter 1 (MAGT1) deficiency causes selective defects in N-linked glycosylation and expression of immune-response genes. Journal of Biological Chemistry, 294 (37), 13638-13656. doi: 10.1074/jbc.RA119.008903

Applications of ion mobility-mass spectrometry in carbohydrate chemistry and glycobiology

Mu, Yuqing, Schulz, Benjamin L. and Ferro, Vito (2018). Applications of ion mobility-mass spectrometry in carbohydrate chemistry and glycobiology. Molecules, 23 (10) 2557, 2557. doi: 10.3390/molecules23102557

Cell Wall and Whole Cell Proteomes Define Flocculation and Fermentation Behavior of Yeast

Kerr, Edward, McDiarmid, Duin, Fraser, James and Schulz, Benjamin (2018). Cell Wall and Whole Cell Proteomes Define Flocculation and Fermentation Behavior of Yeast. Fermentation, 4 (3) 80, 80. doi: 10.3390/fermentation4030080

Pre- and post-puberty expression of genes and proteins in the uterus of Bos indicus heifers: the luteal phase effect post-puberty

Fortes, M. R.S., Zacchi, L. F., Nguyen, L. T., Raidan, F., Weller, M. M.D.C.A., Choo, J. J.Y., Reverter, A., Rego, J. P.A., Boe-Hansen, G. B., Porto-Neto, L. R., Lehnert, S. A., Cánovas, A., Schulz, B. L., Islas-Trejo, A., Medrano, J. F., Thomas, M. G. and Moore, S. S. (2018). Pre- and post-puberty expression of genes and proteins in the uterus of Bos indicus heifers: the luteal phase effect post-puberty. Animal Genetics, 49 (6), 539-549. doi: 10.1111/age.12721

Epigenetic regulation alters biofilm architecture and composition in multiple clinical isolates of nontypeable haemophilus influenzae

Brockman, Kenneth L., Azzari, Patrick N., Branstool, M. Taylor, Atack, John M., Schulz, Benjamin L., Jen, Freda E.-C., Jennings, Michael P. and Bakaletz, Lauren O. (2018). Epigenetic regulation alters biofilm architecture and composition in multiple clinical isolates of nontypeable haemophilus influenzae. mBio, 9 (5) e01682-18. doi: 10.1128/mBio.01682-18

Adipose tissue proteomic analyses to study puberty in Brahman heifers

Nguyen, L. T., Zacchi, L. F., Schulz, B. L., Moore, S. S. and Fortes, M. R. S. (2018). Adipose tissue proteomic analyses to study puberty in Brahman heifers. Journal of Animal Science, 96 (6), 2392-2398. doi: 10.1093/jas/sky128

Group A Streptococcus M1T1 intracellular infection of primary tonsil epithelial cells dampens levels of secreted IL-8 through the action of SpyCEP

Soderholm, Amelia T., Barnett, Timothy C., Korn, Othmar, Rivera-Hernandez, Tania, Seymour, Lisa M., Schulz, Benjamin L., Nizet, Victor, Wells, Christine A., Sweet, Matthew J. and Walker, Mark J. (2018). Group A Streptococcus M1T1 intracellular infection of primary tonsil epithelial cells dampens levels of secreted IL-8 through the action of SpyCEP. Frontiers in Cellular and Infection Microbiology, 8 (MAY) 160, 160. doi: 10.3389/fcimb.2018.00160

Mechanisms of persistence of the ammonia-oxidizing bacteria Nitrosomonas to the biocide free nitrous acid

Laloo, Andrew E., Wei, Justin, Wang, Dongbo, Narayanasamy, Shaman, Vanwonterghem, Inka, Waite, David, Steen, Jason, Kaysen, Anne, Heintz-Buschart, Anna, Wang, Qilin, Schulz, Benjamin, Nouwens, Amanda, Wilmes, Paul, Hugenholtz, Philip, Yuan, Zhiguo and Bond, Philip L. (2018). Mechanisms of persistence of the ammonia-oxidizing bacteria Nitrosomonas to the biocide free nitrous acid. Environmental science & technology, 52 (9), 5386-5397. doi: 10.1021/acs.est.7b04273

New genotypes of Liao ning virus (LNV) in Australia exhibit an insect-specific phenotype

Prow, Natalie A., Mah, Marcus G., Deerain, Joshua M., Warrilow, David, Colmant, Agathe M. G., O'Brien, Caitlin A., Harrison, Jessica J., McLean, Breeanna J., Hewlett, Elise K., Piyasena, Thisun B. H., Hall-Mendelin, Sonja, van den Hurk, Andrew F., Watterson, Daniel, Huang, Bixing, Schulz, Benjamin L., Webb, Cameron E., Johansen, Cheryl A., Chow, Weng K., Hobson-Peters, Jody, Cazier, Chris, Coffey, Lark L., Faddy, Helen M., Suhrbier, Andreas, Bielefeldt-Ohmann, Helle and Hall, Roy A. (2018). New genotypes of Liao ning virus (LNV) in Australia exhibit an insect-specific phenotype. The Journal of General Virology, 99 (4), 596-609. doi: 10.1099/jgv.0.001038

Proteomic investigation of the binding agent between liver glycogen beta particles

Tan, Xinle, Sullivan, Mitchell A., Nada, Sharif S., Deng, Bin, Schulz, Benjamin L. and Gilbert, Robert G. (2018). Proteomic investigation of the binding agent between liver glycogen beta particles. ACS Omega, 3 (4), 3640-3645. doi: 10.1021/acsomega.8b00119

Process Proteomics of Beer Reveals a Dynamic Proteome with Extensive Modifications

Schulz, Benjamin L., Phung, Toan K., Bruschi, Michele, Janusz, Agnieszka, Stewart, Jeff, Meehan, John, Healy, Peter, Nouwens, Amanda S., Fox, Glen P. and Vickers, Claudia E. (2018). Process Proteomics of Beer Reveals a Dynamic Proteome with Extensive Modifications. Journal of Proteome Research, 17 (4), 1647-1653. doi: 10.1021/acs.jproteome.7b00907

Deciphering the electric code of geobacter sulfurreducens in cocultures with pseudomonas aeruginosa via SWATH-MS proteomics

Semenec, Lucie, Laloo, Andrew E., Schulz, Benjamin L., Vergara, Ismael A., Bond, Philip L. and Franks, Ashley E. (2018). Deciphering the electric code of geobacter sulfurreducens in cocultures with pseudomonas aeruginosa via SWATH-MS proteomics. Bioelectrochemistry, 119, 150-160. doi: 10.1016/j.bioelechem.2017.09.013

Convergent microevolution of Cryptococcus neoformans hypervirulence in the laboratory and the clinic

Arras, Samantha D. M., Ormerod, Kate L., Erpf, Paige E., Espinosa, Monica I., Carpenter, Alex C., Blundell, Ross D., Stowasser, Samantha R., Schulz, Benjamin L., Tanurdzic, Milos and Fraser, James A. (2017). Convergent microevolution of Cryptococcus neoformans hypervirulence in the laboratory and the clinic. Scientific Reports, 7 (1) 17918, 1-14. doi: 10.1038/s41598-017-18106-2

Diminished Ost3-dependent N-glycosylation of the BiP nucleotide exchange factor Sil1 is an adaptive response to reductive ER stress

Stevens, Kofi L. P., Black, Amy L., Wells, Kelsi M., Yeo, K. Y. Benjamin, Steuart, Robert F. L., Stirling, Colin J., Schulz, Benjamin L. and Mousley, Carl J. (2017). Diminished Ost3-dependent N-glycosylation of the BiP nucleotide exchange factor Sil1 is an adaptive response to reductive ER stress. Proceedings of the National Academy of Sciences of the United States of America, 114 (47), 12489-12494. doi: 10.1073/pnas.1705641114

Increased liver AGEs induce hepatic injury mediated through an OST48 pathway

Zhuang, Aowen, Yap, Felicia Y. T., Bruce, Clinton, Leung, Chris, Plan, Manuel R., Sullivan, Mitchell A., Herath, Chandana, McCarthy, Domenica, Sourris, Karly C., Kantharidis, Phillip, Coughlan, Melinda T., Febbraio, Mark A. , Hodson, Mark P., Watt, Matthew J., Angus, Peter, Schulz, Benjamin L. and Forbes, Josephine M. (2017). Increased liver AGEs induce hepatic injury mediated through an OST48 pathway. Scientific Reports, 7 (1) 12292, 12292. doi: 10.1038/s41598-017-12548-4

Early-onset torsion dystonia: a novel high-throughput yeast genetic screen for factors modifying protein levels of torsinA Delta E

Zacchi, Lucia F., Dittmar, John C., Mihalevic, Michael J., Shewan, Annette M., Schulz, Benjamin L., Brodsky, Jeffrey L. and Bernstein, Kara A. (2017). Early-onset torsion dystonia: a novel high-throughput yeast genetic screen for factors modifying protein levels of torsinA Delta E. Disease Models & Mechanisms, 10 (9), 1129-1140. doi: 10.1242/dmm.029926

N-glycosylation triggers a dual selection pressure in eukaryotic secretory proteins

Medus, Maximo L., Gomez, Gabriela E., Zacchi, Lucia F., Couto, Paula M., Labriola, Carlos A., Labanda, Maria S., Bielsa, Rodrigo Corti, Clérico, Eugenia M., Schulz, Benjamin L. and Caramelo, Julio J. (2017). N-glycosylation triggers a dual selection pressure in eukaryotic secretory proteins. Scientific Reports, 7 (1) 8788, 8788. doi: 10.1038/s41598-017-09173-6

A new clade of insect-specific flaviviruses from Australian Anopheles mosquitoes displays species-specific host-restriction

Colmant, Agathe M. G., Hobson-Peters, Jody, Bielefeldt-Ohmann, Helle, van den Hurk, Andrew F., Hall-Mendelin, Sonja, Chow, Weng Kong, Johansen, Cheryl A., Fros, Jelke, Simmonds, Peter, Watterson, Daniel, Cazier, Chris, Etebari, Kayvan, Asgari, Sassan, Schulz, Benjamin L., Beebe, Nigel, Vet, Laura J., Piyasena, Thisun B. H., Nguyen, Hong-Duyen, Barnard, Ross T. and Hall, Roy A. (2017). A new clade of insect-specific flaviviruses from Australian Anopheles mosquitoes displays species-specific host-restriction. mSphere, 2 (4) e00262-17, e00262-17.1-e00262-17.19. doi: 10.1128/mSphere.00262-17

'Omic' approaches to study Uropathogenic Escherichia coli virulence

Lo, Alvin W., Moriel, Danilo G., Phan, Minh-Duy, Schulz, Benjamin L., Kidd, Timothy J., Beatson, Scott A. and Schembri, Mark A. (2017). 'Omic' approaches to study Uropathogenic Escherichia coli virulence. Trends in Microbiology, 25 (9), 729-740. doi: 10.1016/j.tim.2017.04.006

Structure aided design of a Neu5Gc specific lectin

Day, Christopher J. , Paton, Adrienne W., Higgins, Melanie A. , Shewell, Lucy K. , Jen, Freda E.-C., Schulz, Benjamin L., Herdman, Brock P., Paton, James C. and Jennings, Michael P. (2017). Structure aided design of a Neu5Gc specific lectin. Scientific Reports, 7 (1) 1495, 1495. doi: 10.1038/s41598-017-01522-9

Sirtuins in the phylum Basidiomycota: A role in virulence in Cryptococcus neoformans

Arras, Samantha D. M., Chitty, Jessica L., Wizrah, Maha S. I., Erpf, Paige E., Schulz, Benjamin L., Tanurdzic, Milos and Fraser, James A. (2017). Sirtuins in the phylum Basidiomycota: A role in virulence in Cryptococcus neoformans. Scientific Reports, 7 (1) 46567, 46567.1-46567.14. doi: 10.1038/srep46567

Discovery and characterisation of castlerea virus, a new species of Negevirus isolated in Australia

O'Brien, Caitlin A., McLean, Breeanna J., Colmant, Agathe M. G., Harrison, Jessica J., Hall-Mendelin, Sonja, van den Hurk, Andrew F., Johansen, Cheryl A., Watterson, Daniel, Bielefeldt-Ohmann, Helle, Newton, Natalee D., Schulz, Benjamin L., Hall, Roy A. and Hobson-Peters, Jody (2017). Discovery and characterisation of castlerea virus, a new species of Negevirus isolated in Australia. Evolutionary Bioinformatics, 13, 1176934317691269. doi: 10.1177/1176934317691269

Identification and validation of a salivary protein panel to detect heart failure early

Zhang, Xi, Walsh, Terry, Atherton, John J., Kostner, Karam, Schulz, Benjamin and Punyadeera, Chamindie (2017). Identification and validation of a salivary protein panel to detect heart failure early. Theranostics, 7 (18) 21727, 4350-4358. doi: 10.7150/thno.21727

High performance targeted mass spectrometry with precision data independent acquisition reveals site-specific glycosylation macroheterogeneity

Yeo, K. Y. Benjamin, Chrysanthopoulos, Panangiotis K., Nouwens, Amanda S., Marcellin, Esteban and Schulz, Benjamin L. (2016). High performance targeted mass spectrometry with precision data independent acquisition reveals site-specific glycosylation macroheterogeneity. Analytical Biochemistry, 510, 106-113. doi: 10.1016/j.ab.2016.06.009

A new non-degradative method to purify glycogen

Tan, Xinle, Sullivan, Mitchell A., Gao, Fei, Li, Shihan, Schulz, Benjamin L. and Gilbert, Robert G. (2016). A new non-degradative method to purify glycogen. Carbohydrate Polymers, 147, 165-170. doi: 10.1016/j.carbpol.2016.04.009

Vegemite beer: yeast extract spreads as nutrient supplements to promote fermentation

Kerr, Edward D. and Schulz, Benjamin L. (2016). Vegemite beer: yeast extract spreads as nutrient supplements to promote fermentation. Peerj, 4 (10) e2271, e2271. doi: 10.7717/peerj.2271

Neisseria meningitidis lacking the major porins PorA and PorB is viable and modulates apoptosis and the oxidative burst of neutrophils

Peak, Ian R., Chen, Adrienne, Jen, Freda E. -C., Jennings, Courtney, Schulz, Benjamin L., Saunders, Nigel J., Khan, Arshad, Seifert, H. Steven and Jennings, Michael P. (2016). Neisseria meningitidis lacking the major porins PorA and PorB is viable and modulates apoptosis and the oxidative burst of neutrophils. Journal of Proteome Research, 15 (8), 2356-2365. doi: 10.1021/acs.jproteome.5b00938

Maturing glycoproteomics technologies provide unique structural insights into the N-glycoproteome and its regulation in health and disease

Thaysen-Andersen, Morten, Packer, Nicolle H. and Schulz, Benjamin L. (2016). Maturing glycoproteomics technologies provide unique structural insights into the N-glycoproteome and its regulation in health and disease. Molecular and Cellular Proteomics, 15 (6), 1773-1790. doi: 10.1074/mcp.O115.057638

SWATH-MS glycoproteomics reveals consequences of defects in the glycosylation machinery

Zacchi, Lucia F. and Schulz, Benjamin L. (2016). SWATH-MS glycoproteomics reveals consequences of defects in the glycosylation machinery. Molecular and Cellular Proteomics, 15 (7), 2435-2447. doi: 10.1074/mcp.M115.056366

Enrichment and identification of glycoproteins in human saliva using lectin magnetic bead arrays

Caragata, Michael, Shah, Alok K., Schulz, Benjamin L., Hill, Michelle M. and Punyadeera, Chamindie (2016). Enrichment and identification of glycoproteins in human saliva using lectin magnetic bead arrays. Analytical Biochemistry, 497, 76-82. doi: 10.1016/j.ab.2015.11.024

The current status of heart failure diagnostic biomarkers

Zhang, Xi, Schulz, Benjamin L. and Punyadeera, Chamindie (2016). The current status of heart failure diagnostic biomarkers. Expert Review of Molecular Diagnostics, 16 (4), 487-500. doi: 10.1586/14737159.2016.1144474

N-glycoprotein macroheterogeneity: biological implications and proteomic characterization.

Zacchi, Lucia F. and Schulz, Benjamin L. (2015). N-glycoprotein macroheterogeneity: biological implications and proteomic characterization.. Glycoconjugate Journal, 33 (3), 1-18. doi: 10.1007/s10719-015-9641-3

Correction: Acid hydrolysis and molecular density of phytoglycogen and liver glycogen helps understand the bonding in glycogen a (composite) particles

Powell, Prudence O., Sullivan, Mitchell A., Sheehy, Joshua J., Schulz, Benjamin L., Warren, Frederick J. and Gilbert, Robert G. (2015). Correction: Acid hydrolysis and molecular density of phytoglycogen and liver glycogen helps understand the bonding in glycogen a (composite) particles. PLoS One, 10 (7) e0134065, e0134065. doi: 10.1371/journal.pone.0134065

Automated measurement of site-specific N-glycosylation occupancy with SWATH-MS

Xu, Ying, Bailey, Ulla-Maja and Schulz, Benjamin L. (2015). Automated measurement of site-specific N-glycosylation occupancy with SWATH-MS. Proteomics, 15 (13), 2177-2186. doi: 10.1002/pmic.201400465

Evolutionary engineering improves tolerance for replacement jet fuels in Saccharomyces cerevisiae

Brennan, Timothy C. R., Williams, Thomas C., Schulz, Benjamin L., Palfreyman, Robin W., Kroemer, Jens O. and Nielsen, Lars K. (2015). Evolutionary engineering improves tolerance for replacement jet fuels in Saccharomyces cerevisiae. Applied and Environmental Microbiology, 81 (10), 3316-3325. doi: 10.1128/AEM.04144-14

Molecular structure of glycogen in diabetic liver

Deng, Bin, Sullivan, Mitchell A., Li, Jialun, Tan, Xinle, Zhu, Chengjun, Schulz, Benjamin L. and Gilbert, Robert G. (2015). Molecular structure of glycogen in diabetic liver. Glycoconjugate Journal, 32 (3-4), 113-118. doi: 10.1007/s10719-015-9578-6

A Genomic Safe Haven for Mutant Complementation in Cryptococcus neoformans.

Arras, Samantha D. M., Chitty, Jessica L., Blake, Kirsten L., Schulz, Benjamin L. and Fraser, James A. (2015). A Genomic Safe Haven for Mutant Complementation in Cryptococcus neoformans.. PLoS One, 10 (4) e0122916, e0122916-e0122916. doi: 10.1371/journal.pone.0122916

A rapid extraction method for glycogen from formalin-fixed liver

Sullivan, Mitchell A., Li, Shihan, Aroney, Samuel T.N., Deng, Bin, Li, Cheng, Roura, Eugeni, Schulz, Benjamin L., Harcourt, Brooke E., Forbes, Josephine M. and Gilbert, Robert G. (2015). A rapid extraction method for glycogen from formalin-fixed liver. Carbohydrate Polymers, 118, 9-15. doi: 10.1016/j.carbpol.2014.11.005

Acid Hydrolysis and Molecular Density of Phytoglycogen and Liver Glycogen Helps Understand the Bonding in Glycogen α (Composite) Particles.

Powell, Prudence O., Sullivan, Mitchell A., Sheehy, Joshua J., Schulz, Benjamin L., Warren, Frederick J. W. and Gilbert, Robert G. (2015). Acid Hydrolysis and Molecular Density of Phytoglycogen and Liver Glycogen Helps Understand the Bonding in Glycogen α (Composite) Particles.. PLoS One, 10 (3) e0121337, e0121337-e0121337. doi: 10.1371/journal.pone.0121337

High-antibody-producing Chinese hamster ovary cells up-regulate intracellular protein transport and glutathione synthesis

Orellana, Camila A., Marcellin, Esteban, Schulz, Benjamin L., Nouwens, Amanda S., Gray, Peter P. and Nielsen, Lars K. (2015). High-antibody-producing Chinese hamster ovary cells up-regulate intracellular protein transport and glutathione synthesis. Journal of Proteome Research, 14 (2), 609-618. doi: 10.1021/pr501027c

Oligosaccharyltransferase Subunits Bind Polypeptide Substrate to Locally Enhance N-glycosylation

Jamaluddin, M. Fairuz B., Bailey, Ulla-Maja and Schulz, Benjamin L. (2014). Oligosaccharyltransferase Subunits Bind Polypeptide Substrate to Locally Enhance N-glycosylation. Molecular and Cellular Proteomics, 13 (12), 3286-3293. doi: 10.1074/mcp.M114.041178

Protein O-mannosyltransferases associate with the translocon to modify translocating polypeptide chains

Loibl, Martin, Wunderle, Lina, Hutzler, Johannes, Schulz, Benjamin L., Aebi, Markus and Strahl, Sabine (2014). Protein O-mannosyltransferases associate with the translocon to modify translocating polypeptide chains. Journal of Biological Chemistry, 289 (12), 8599-8611. doi: 10.1074/jbc.M113.543116

Identification of salivary N-glycoproteins and measurement of glycosylation site occupancy by boronate glycoprotein enrichment and liquid chromatography/electrospray ionization tandem mass spectrometry

Xu, Ying, Bailey, Ulla-Maja, Punyadeera, Chamindie and Schulz, Benjamin L. (2014). Identification of salivary N-glycoproteins and measurement of glycosylation site occupancy by boronate glycoprotein enrichment and liquid chromatography/electrospray ionization tandem mass spectrometry. Rapid Communications In Mass Spectrometry, 28 (5), 471-482. doi: 10.1002/rcm.6806

Selection against glycosylation sites in potential target proteins of the general HMWC N-glycosyltransferase in Haemophilus influenzae

Gawthorne, Jayde A., Tan, Nikki Y., Bailey, Ulla-Maja, Davis, Margaret R., Wong, Linette W., Naidu, Ranjitha, Fox, Kate L., Jennings, Michael P. and Schulz, Benjamin L. (2014). Selection against glycosylation sites in potential target proteins of the general HMWC N-glycosyltransferase in Haemophilus influenzae. Biochemical and Biophysical Research Communications, 445 (3), 633-638. doi: 10.1016/j.bbrc.2014.02.044

Sequence-based protein stabilization in the absence of glycosylation

Tan, Nikki Y., Bailey, Ulla-Maja, Jamaluddin, M Fairuz, Mahmud, S Halimah Binte, Raman, Suresh C. and Schulz, Benjamin L. (2014). Sequence-based protein stabilization in the absence of glycosylation. Nature Communications, 5 (3099) 3099, 1-7. doi: 10.1038/ncomms4099

A rapid and cost-effective method of producing recombinant proBNP and NT-proBNP variants in Escherichia coli for immunoassay of heart failure

Soleh, Muhammad Tarmizi, Foo, Jared Yong Yang, Bailey, Ulla-Maja, Tan, Nikki Yi, Wan, Yunxia, Cooper-White, Justin, Schulz, Benjamin Luke and Punyadeera, Chamindie (2014). A rapid and cost-effective method of producing recombinant proBNP and NT-proBNP variants in Escherichia coli for immunoassay of heart failure. Biotechnology Letters, 36 (1), 133-140. doi: 10.1007/s10529-013-1341-0

The globally disseminated M1T1 clone of Group A Streptococcus evades autophagy for intracellular replication

Barnett, Timothy C., Liebl, David, Seymour, Lisa M., Gillen, Christine M., Lim, Jin Yan, LaRock, Christopher N., Davies, Mark R., Schulz, Benjamin L., Nizet, Victor, Teasdale, Rohan D. and Walker, Mark J. (2013). The globally disseminated M1T1 clone of Group A Streptococcus evades autophagy for intracellular replication. Cell Host and Microbe, 14 (6), 675-682. doi: 10.1016/j.chom.2013.11.003

Circulating Fragments of N-Terminal Pro-B-Type Natriuretic Peptides in Plasma of Heart Failure Patients

Foo, Jared Yong Yang, Wan, Yunxia, Schulz, Benjamin L., Kostner, Karam, Atherton, John, Cooper-White, Justin, Dimeski, Goce and Punyadeera, Chamindie (2013). Circulating Fragments of N-Terminal Pro-B-Type Natriuretic Peptides in Plasma of Heart Failure Patients. Clinical Chemistry, 59 (10), 1523-1531. doi: 10.1373/clinchem.2012.200204

Saliva proteome research: current status and future outlook

Schulz, Benjamin L., Cooper-White, Justin and Punyadeera, Chamindie K. (2013). Saliva proteome research: current status and future outlook. Critical Reviews in Biotechnology, 33 (3), 246-259. doi: 10.3109/07388551.2012.687361

Identification of bacterial protein O-Oligosaccharyltransferases and their glycoprotein substrates

Schulz, Benjamin L., Jen, Freda E. C., Power, Peter M., Jones, Christopher E., Fox, Kate L., Ku, Shan C., Blanchfield, Joanne T. and Jennings, Michael P. (2013). Identification of bacterial protein O-Oligosaccharyltransferases and their glycoprotein substrates. PLoS One, 8 (5) e62768, e62768.1-e62768.11. doi: 10.1371/journal.pone.0062768

Dual Pili Post-translational modifications synergize to mediate meningococcal adherence to platelet activating factor receptor on human airway cells

Jen, Freda E. -C., Warren, Matthew J., Schulz, Benjamin L., Power, Peter M., Swords, W. Edward, Weiser, Jeffery N., Apicella, Michael A., Edwards, Jennifer L. and Jennings, Michael P. (2013). Dual Pili Post-translational modifications synergize to mediate meningococcal adherence to platelet activating factor receptor on human airway cells. PLoS Pathogens, 9 (5) e1003377, e1003377.1-e1003377.16. doi: 10.1371/journal.ppat.1003377

Mixed disulfide formation in vitro between a glycoprotein substrate and yeast oligosaccharyltransferase subunits Ost3p and Ost6p

Yusuf, Siti N. H. Mohd, Bailey, Ulla-Maja, Tan, Nikki Y., Jamaluddin, Muhammad Fairuz and Schulz, Benjamin L. (2013). Mixed disulfide formation in vitro between a glycoprotein substrate and yeast oligosaccharyltransferase subunits Ost3p and Ost6p. Biochemical and Biophysical Research Communications, 432 (3), 438-443. doi: 10.1016/j.bbrc.2013.01.128

Deglycosylation systematically improves N-glycoprotein identification in liquid chromatography-tandem mass spectrometry proteomics for analysis of cell wall stress responses in Saccharomyces cerevisiae lacking Alg3p

Bailey, Ulla-Maja and Schulz, Benjamin L. (2013). Deglycosylation systematically improves N-glycoprotein identification in liquid chromatography-tandem mass spectrometry proteomics for analysis of cell wall stress responses in Saccharomyces cerevisiae lacking Alg3p. Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences, 923-924, 16-21. doi: 10.1016/j.jchromb.2013.01.026

Recombinant truncated AniA of pathogenic Neisseria elicits a non-native immune response and functional blocking antibodies

Shewell, Lucy K., Ku, Shan C., Schulz, Benjamin L., Jen, Freda E. -C., Mubaiwa, Tsitsi D., Ketterer, Margaret R., Apicella, Michael A. and Jennings, Michael P. (2013). Recombinant truncated AniA of pathogenic Neisseria elicits a non-native immune response and functional blocking antibodies. Biochemical and Biophysical Research Communications, 431 (2), 215-220. doi: 10.1016/j.bbrc.2012.12.132

Substrate recognition of a structure motif for phosphorylcholine post-translational modification in Neisseria meningitidis

Jen, Freda E. -C., Jones, Christopher E., Wilson, Jennifer C., Schulz, Benjamin L. and Jennings, Michael P. (2013). Substrate recognition of a structure motif for phosphorylcholine post-translational modification in Neisseria meningitidis. Biochemical and Biophysical Research Communications, 431 (4), 808-814. doi: 10.1016/j.bbrc.2012.12.088

Analysis of the extreme diversity of salivary alpha-amylase isoforms generated by physiological proteolysis using liquid chromatography-tandem mass spectrometry

Bailey, Ulla-Maja, Punyadeera, Chamindie, Cooper-White, Justin J. and Schulz, Benjamin L. (2012). Analysis of the extreme diversity of salivary alpha-amylase isoforms generated by physiological proteolysis using liquid chromatography-tandem mass spectrometry. Journal of Chromatography B-Analytical Technologies in the Biomedical and Life Sciences, 911, 21-26. doi: 10.1016/j.jchromb.2012.10.023

Analysis of congenital disorder of glycosylation-Id in a yeast model system shows diverse site-specific under-glycosylation of glycoproteins

Bailey, Ulla-Maja, Jamaluddin, Muhammad Fairuz and Schulz, Benjamin L. (2012). Analysis of congenital disorder of glycosylation-Id in a yeast model system shows diverse site-specific under-glycosylation of glycoproteins. Journal of Proteome Research, 11 (11), 5376-5383. doi: 10.1021/pr300599f

Analysis of mucosal mucins separated by SDS-urea agarose polyacrylamide composite gel electrophoresis

Issa, Samah M. A., Schulz, Benjamin L., Packer, Nicolle H. and Karlsson, Niclas G. (2011). Analysis of mucosal mucins separated by SDS-urea agarose polyacrylamide composite gel electrophoresis. Electrophoresis, 32 (24), 3554-3563. doi: 10.1002/elps.201100374

Polypeptide binding specificities of Saccharomyces cerevisiae oligosaccharyltransferase accessory proteins Ost3p and Ost6p

Jamaluddin, M. Fairuz B., Bailey, Ulla-Maja, Tan, Nikki Y. J., Stark, Anthony P. and Schulz, Benjamin L. (2011). Polypeptide binding specificities of Saccharomyces cerevisiae oligosaccharyltransferase accessory proteins Ost3p and Ost6p. Protein Science, 20 (5), 849-855. doi: 10.1002/pro.610

Signal sequence non-optimal codons are required for the correct folding of mature maltose binding protein

Zalucki, Yaramah M., Jones, Christopher E., Ng, Preston S. K., Schulz, Benjamin L. and Jennings, Michael P. (2010). Signal sequence non-optimal codons are required for the correct folding of mature maltose binding protein. BBA: Biomembranes, 1798 (6), 1244-1249. doi: 10.1016/j.bbamem.2010.03.010

A combined method for producing homogeneous glycoproteins with eukaryotic N-glycosylation

Schwarz, Flavio, Huang, Wei, Li, Cishan, Schulz, Benjamin L., Lizak, Christian, Palumbo, Alessandro, Numao, Shin, Neri, Dario, Aebi, Markus and Wang, Lai-Xi (2010). A combined method for producing homogeneous glycoproteins with eukaryotic N-glycosylation. Nature Chemical Biology, 6 (4), 264-266. doi: 10.1038/NCHEMBIO.314

Distinct donor and acceptor specificities of Trypanosoma brucei oligosaccharyltransferases

Izquierdo, Luis, Schulz, Benjamin L., Rodrigues, João A., Güther, Maria Lucia S., Procter, James B., Barton, Geoffrey J., Aebi, Markus and Ferguson, Michael A. J. (2009). Distinct donor and acceptor specificities of Trypanosoma brucei oligosaccharyltransferases. EMBO Journal, 28 (17), 2650-2661. doi: 10.1038/emboj.2009.203

Haem-delivery proteins in cytochrome c maturation System II

Ahuja, Umesh, Kjelgaard, Peter, Schulz, Benjamin L., Thony-Meyer, Linda and Hederstedt, Lars (2009). Haem-delivery proteins in cytochrome c maturation System II. Molecular Microbiology, 73 (6), 1058-1071. doi: 10.1111/j.1365-2958.2009.06833.x

Oxidoreductase activity of oligosaccharyltransferase subunits Ost3p and Ost6p defines site-specific glycosylation efficiency

Schulz, Benjamin L., Stirnimann, Christian U., Grimshaw, John P. A., Brozzo, Maurice S., Fritsch, Fabienne, Mohorko, Elisabeth, Capitani, Guido, Glockshuber, Rudi, Grütter, Markus G. and Aebi, Markus (2009). Oxidoreductase activity of oligosaccharyltransferase subunits Ost3p and Ost6p defines site-specific glycosylation efficiency. PNAS, 106 (27), 11061-11066. doi: 10.1073/pnas.0812515106

Analysis of glycosylation site occupancy reveals a role for Ost3p and Ost6p in site-specific N-glycosylation efficiency

Schulz, Benjamin L. and Aebi, Markus (2009). Analysis of glycosylation site occupancy reveals a role for Ost3p and Ost6p in site-specific N-glycosylation efficiency. Molecular and Cellular Proteomics, 8 (2), 357-364. doi: 10.1074/mcp.M800219-MCP200

The pilin O-glycosylation pathway of pathogenic Neisseria is a general system that glycosylates AniA, an outer membrane nitrite reductase

Ku, S.C., Schulz, B.L., Power, P.M. and Jennings, M.P. (2009). The pilin O-glycosylation pathway of pathogenic Neisseria is a general system that glycosylates AniA, an outer membrane nitrite reductase. Biochemical and Biophysical Research Communications, 378 (1), 84-89. doi: 10.1016/j.bbrc.2008.11.025

All in One: Leishmania major STT3 Proteins Substitute for the Whole Oligosaccharyltransferase Complex in Saccharomyces cerevisiae

Nasab, Farnoush Parsaie, Schulz, Benjamin L., Gamarro, Francisco, Parodi, Armando J. and Aebi, Markus (2008). All in One: Leishmania major STT3 Proteins Substitute for the Whole Oligosaccharyltransferase Complex in Saccharomyces cerevisiae. Molecular Biology of the Cell, 19 (9), 3758-3768. doi: 10.1091/mbc.E08-05-0467

Glycosylation of sputum mucins is altered in cystic fibrosis patients

Schulz, Benjamin L., Sloane, Andrew J., Robinson, Leanne J., Prasad, Sindhu S., Lindner, Robyn A., Robinson, Michael, Bye, Peter T., Nielson, Dennis W., Harry, Jenny L., Packer, Nicolle H. and Karlsson, Niclas G. (2007). Glycosylation of sputum mucins is altered in cystic fibrosis patients. Glycobiology, 17 (7), 698-712. doi: 10.1093/glycob/cwm036

Clinical laboratory testing in human medicine based on the detection of glycoconjugates

Schulz, Benjamin L., Laroy, Wouter and Callewaert, Nico (2007). Clinical laboratory testing in human medicine based on the detection of glycoconjugates. Current Molecular Medicine, 7 (4), 397-416. doi: 10.2174/156652407780831629

N-Linked glycosylation of folded proteins by the bacterial oligosaccharyl transferase

Kowarik, Michael, Numao, Shin, Feldman, Mario F., Schulz, Benjamin L., Callewaert, Nico, Kiermaier, Eva, Catrein, Ina and Aebi, Markus (2006). N-Linked glycosylation of folded proteins by the bacterial oligosaccharyl transferase. Science, 314 (5802), 1148-1150. doi: 10.1126/science.1134351

Improved 2-DE of microorganisms after acidic extraction

Herbert, Ben R., Grinyer, Jasmine, McCarthy, John T., Isaacs, Mitchell, Harry, Elizabeth J., Nevalainen, Helena, Traini, Mathew D., Hunt, Sybille, Schulz, Ben, Laver, Matthew, Goodall, Anthony R., Packer, Joanne, Harry, Jenny L. and Williams, Keith L. (2006). Improved 2-DE of microorganisms after acidic extraction. Electrophoresis, 27 (8), 1630-1640. doi: 10.1002/elps.200500753

Definition of the bacterial N-glycosylation site consensus sequence

Kowarik, Michael, Young, N. Martin, Numao, Shin, Schulz, Benjamin L., Hug, Isabelle, Callewaert, Nico, Mills, Dominic C., Watson, David C., Hernandez, Marcela, Kelly, John F., Wacker, Michael and Aebi, Markus (2006). Definition of the bacterial N-glycosylation site consensus sequence. The EMBO Journal, 25 (9), 1957-1966. doi: 10.1038/sj.emboj.7601087

Use of graphitised carbon negative ion LC-MS to analyse enzymatically digested glycosaminoglycans

Karlsson, Niclas G., Schulz, Benjamin L., Packer, Nicolle H. and Whitelock, John M. (2005). Use of graphitised carbon negative ion LC-MS to analyse enzymatically digested glycosaminoglycans. Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences, 824 (1-2), 139-147. doi: 10.1016/j.jchromb.2005.07.014

MUC5B glycosylation in human saliva reflects blood group and secretor status

Thomsson, Kristina A., Schulz, Benjamin L., Packer, Nicolle H. and Karlsson, Niclas G. (2005). MUC5B glycosylation in human saliva reflects blood group and secretor status. Glycobiology, 15 (8), 791-804. doi: 10.1093/glycob/cwi059

Mucin glycosylation changes in cystic fibrosis lung disease are not manifest in submucosal gland secretions

Schulz, Benjamin L., Sloane, Andrew J., Robinson, Leanne J., Sebastian, Lucille T., Glanville, Allan R., Song, Yuanlin, Verkman, Alan S., Harry, Jenny L., Packer, Nicolle H. and Karlsson, Niclas G. (2005). Mucin glycosylation changes in cystic fibrosis lung disease are not manifest in submucosal gland secretions. Biochemical Journal, 387 (3), 911-919. doi: 10.1042/BJ20041641

Structural determination of neutral O-linked oligosaccharide alditols by negative ion LC-electrospray-MS

Karlsson, Niclas G., Schulz, Benjamin L. and Packer, Nicolle H. (2004). Structural determination of neutral O-linked oligosaccharide alditols by negative ion LC-electrospray-MS. Journal of the American Society for Mass Spectrometry, 15 (5), 659-672. doi: 10.1016/j.jasms.2004.01.002

Development of a mass fingerprinting tool for automated interpretation of oligosaccharide fragmentation data

Joshi, Hiren J., Harrison, Mathew J., Schulz, Benjamin L., Cooper, Catherine A., Packer, Nicolle H. and Karlsson, Niclas G. (2004). Development of a mass fingerprinting tool for automated interpretation of oligosaccharide fragmentation data. Proteomics, 4 (6), 1650-1664. doi: 10.1002/pmic.200300784

Identification of two highly sialylated human tear fluid DMBT1 ssoforms: Major high molecular weight glycoproteins in human tears

Schulz, Benjamin L., Oxley, David, Packer, Nicolle H. and Karlsson, Niclas G. (2002). Identification of two highly sialylated human tear fluid DMBT1 ssoforms: Major high molecular weight glycoproteins in human tears. Biochemical Journal, 366 (2), 1-29. doi: 10.1042/BJ20011876

Sequential analysis of N- and O-Linked Glycosylation of 2D-PAGE separated glycoproteins

Wilson, Nicole L., Schulz, Benjamin L., Karlsson, Niclas G. and Packer, Nicolle H. (2002). Sequential analysis of N- and O-Linked Glycosylation of 2D-PAGE separated glycoproteins. Journal of Proteome Research, 1 (6), 521-529. doi: 10.1021/pr025538d

Small-scale analysis of o-linked oligosaccharides from glycoproteins and mucins separated by gel electrophoresis

Schulz, Benjamin L., Packer, Nicolle H. and Karlsson, Niclas G. (2002). Small-scale analysis of o-linked oligosaccharides from glycoproteins and mucins separated by gel electrophoresis. Analytical Chemistry, 74 (23), 6088-6097. doi: 10.1021/ac025890a

Saliva: linking oral health with heart failure

Zhang, X. Xi, Schulz, B., Walsh, T., Atherton, J., Kostner, K. and Punyadeera, C. (2017). Saliva: linking oral health with heart failure. Heart Failure 2017 and the 4th World Congress on Acute Heart Failure, Paris, France, 29 April - 2 May 2017. Oxford, United Kingdom: John Wiley & Sons.

Site-specific glycosylation of viral surface proteins using mass spectrometry

Pegg, Cassandra L., Phung, Toan K. and Schulz, Benjamin L. (2017). Site-specific glycosylation of viral surface proteins using mass spectrometry. Annual Meeting of the Society for Glycobiology , Portland, OR, United States, 05-08 November 2017. Cary, NC, United States: Oxford University Press. doi: 10.1093/glycob/cwx086

Glycogen: Higher -Level Molecular Structure and Diabetes

Tan, Xinle, Deng, Bin, Jiang, Xiaoyin, Zhang, Peng, Hu, Zhenxia, Li, Enpeng, Sullivan, Mitchell A., Schulz, Benjamin L. and Gilbert, Robert G. (2016). Glycogen: Higher -Level Molecular Structure and Diabetes. 12th International Conference on Polysaccharides-Glycoscience, Prague Czech Republic, 19-21 October 2016. Prague Czech Republic: Czech Chemical Society.

Ager1 overexpression in glomerular podocytes results in renal disease which is exacerbated by diabetes

Zhuang, A., Sourris, K. C, Harcourt, B. E, Penfold, S. A., Fotheringham, A. K., McCarthy, D., Schulz, B. and Forbes, J. M. (2014). Ager1 overexpression in glomerular podocytes results in renal disease which is exacerbated by diabetes. 50th Annual Scientific Meeting of the Australian and New Zealand Society of Nephrology, Melbourne VIC, Australia, 25 - 27 August 2014. Richmond, VIC Australia: Wiley-Blackwell Publishing Asia. doi: 10.1111/nep.12301

Give up sugar with this one weird trick!

Tan, Nikki, Bailey, Ulla-Maja, Jamaluddin, Fairuz, Mahmud, Siti, Raman, Suresh and Schulz, Benjamin (2014). Give up sugar with this one weird trick!. Joint Meeting of the Society for Glycobiology (SFG) and the Japanese Society of Carbohydrate Research (JSCR), Honolulu, HI United States, 16-19 November 2014. Cary, NC United States: Oxford University Press. doi: 10.1093/glycob/cwu107

Exploring the role of the glycosylation of mucins in the defence against pathogens in the respiratory and gastrointestinal systems

Karlsson, NG, Schulz, BL, Wilson, NL and Packer, NH (2004). Exploring the role of the glycosylation of mucins in the defence against pathogens in the respiratory and gastrointestinal systems. Joint Meeting of the Society-for-Glycobiology/Japanese-Society-for-Carbohydrate-Research, Honolulu Hi, Nov 17-20, 2004. CARY: OXFORD UNIV PRESS INC.