The University of Queensland

Image synthesis for MRI-only radiotherapy treatment planning

Dowling, Jason, O'Connor, Laura, Acosta, Oscar, Raniga, Parnesh, de Crevoisier, Renaud, Nunes, Jean-Claude, Barateau, Anais, Chourak, Hilda, Choi, Jae Hyuk and Greer, Peter (2022). Image synthesis for MRI-only radiotherapy treatment planning. Biomedical image synthesis and simulation: methods and applications. (pp. 423-445) edited by Ninon Burgos and David Svoboda. London, United Kingdom: Academic Press/Elsevier. doi: 10.1016/B978-0-12-824349-7.00027-X

ImageCLEF 2021 Best of Labs: The Curious Case of Caption Generation for Medical Images

Nicolson, Aaron, Dowling, Jason and Koopman, Bevan (2022). ImageCLEF 2021 Best of Labs: The Curious Case of Caption Generation for Medical Images. Lecture Notes in Computer Science. (pp. 190-203) Cham: Springer International Publishing. doi: 10.1007/978-3-031-13643-6_15

Multi-atlas-based segmentation of pelvic structures from ct scans for planning in prostate cancer radiotherapy

Acosta, Oscar, Dowling, Jason, Drean, Gael, Simon, Antoine, De Crevoisier, Renaud and Haigron, Pascal (2014). Multi-atlas-based segmentation of pelvic structures from ct scans for planning in prostate cancer radiotherapy. Abdomen and Thoracic Imaging: An Engineering and Clinical Perspective. (pp. 623-656) Boston, MA: Springer US. doi: 10.1007/978-1-4614-8498-1_24

Validation of a Fully Automated Hybrid Deep Learning Cardiac Substructure Segmentation Tool for Contouring and Dose Evaluation in Lung Cancer Radiotherapy

Chin, V., Finnegan, R.N., Chlap, P., Otton, J., Haidar, A., Holloway, L., Thwaites, D.I., Dowling, J., Delaney, G.P. and Vinod, S.K. (2023). Validation of a Fully Automated Hybrid Deep Learning Cardiac Substructure Segmentation Tool for Contouring and Dose Evaluation in Lung Cancer Radiotherapy. Clinical Oncology, 35 (6), 370-381. doi: 10.1016/j.clon.2023.03.005

Open-source, fully-automated hybrid cardiac substructure segmentation: development and optimisation

Finnegan, Robert N., Chin, Vicky, Chlap, Phillip, Haidar, Ali, Otton, James, Dowling, Jason, Thwaites, David I., Vinod, Shalini K., Delaney, Geoff P. and Holloway, Lois (2023). Open-source, fully-automated hybrid cardiac substructure segmentation: development and optimisation. Physical and Engineering Sciences in Medicine, 46 (1), 1-17. doi: 10.1007/s13246-023-01231-w

Automatic classification of distal radius fracture using a two-stage ensemble deep learning framework

Min, Hang, Rabi, Yousef, Wadhawan, Ashish, Bourgeat, Pierrick, Dowling, Jason, White, Jordy, Tchernegovski, Ayden, Formanek, Blake, Schuetz, Michael, Mitchell, Gary, Williamson, Frances, Hacking, Craig, Tetsworth, Kevin and Schmutz, Beat (2023). Automatic classification of distal radius fracture using a two-stage ensemble deep learning framework. Physical and Engineering Sciences in Medicine, 46 (2), 877-886. doi: 10.1007/s13246-023-01261-4

Investigation of a water equivalent depth method for dosimetric accuracy evaluation of synthetic CT

Hyuk Choi, Jae, Asadi, Behzad, Simpson, John, Dowling, Jason A., Chalup, Stephan, Welsh, James and Greer, Peter (2023). Investigation of a water equivalent depth method for dosimetric accuracy evaluation of synthetic CT. Physica Medica, 105 102507, 102507. doi: 10.1016/j.ejmp.2022.11.011

Automatic deep learning-based consolidation/collapse classification in lung ultrasound images for COVID-19 induced pneumonia

Durrani, Nabeel, Vukovic, Damjan, van der Burgt, Jeroen, Antico, Maria, van Sloun, Ruud J. G., Canty, David, Steffens, Marian, Wang, Andrew, Royse, Alistair, Royse, Colin, Haji, Kavi, Dowling, Jason, Chetty, Girija and Fontanarosa, Davide (2022). Automatic deep learning-based consolidation/collapse classification in lung ultrasound images for COVID-19 induced pneumonia. Scientific Reports, 12 (1) 17581, 1-15. doi: 10.1038/s41598-022-22196-y

A high-performance method of deep learning for prostate MR-only radiotherapy planning using an optimized Pix2Pix architecture

Tahri, S., Barateau, A., Cadin, C., Chourak, H., Ribault, S., Nozahic, F., Acosta, O., Dowling, J.A., Greer, P.B., Largent, A., Lafond, C., De Crevoisier, R. and Nunes, J.C. (2022). A high-performance method of deep learning for prostate MR-only radiotherapy planning using an optimized Pix2Pix architecture. Physica Medica, 103, 108-118. doi: 10.1016/j.ejmp.2022.10.003

Quality assurance for MRI-only radiation therapy: A voxel-wise population-based methodology for image and dose assessment of synthetic CT generation methods

Chourak, Hilda, Barateau, Anaïs, Tahri, Safaa, Cadin, Capucine, Lafond, Caroline, Nunes, Jean-Claude, Boue-Rafle, Adrien, Perazzi, Mathias, Greer, Peter B., Dowling, Jason, de Crevoisier, Renaud and Acosta, Oscar (2022). Quality assurance for MRI-only radiation therapy: A voxel-wise population-based methodology for image and dose assessment of synthetic CT generation methods. Frontiers in Oncology, 12 968689, 1-17. doi: 10.3389/fonc.2022.968689

Terrestrial analogue research to support human performance on Mars: a review and bibliographic analysis

Terhorst, Andrew and Dowling, Jason A. (2022). Terrestrial analogue research to support human performance on Mars: a review and bibliographic analysis. Space: Science and Technology, 2022 9841785, 1-18. doi: 10.34133/2022/9841785

CAN3D: Fast 3D medical image segmentation via compact context aggregation

Dai, Wei, Woo, Boyeong, Liu, Siyu, Marques, Matthew, Engstrom, Craig, Greer, Peter B., Crozier, Stuart, Dowling, Jason A. and Chandra, Shekhar S. (2022). CAN3D: Fast 3D medical image segmentation via compact context aggregation. Medical Image Analysis, 82 102562, 1-17. doi: 10.1016/j.media.2022.102562

Assessing the impact of magnetic resonance treatment simulation (MRSIM) on target volume delineation and dose to organs at risk for oropharyngeal radiotherapy

Richardson, Haylea, Kumar, Mahesh, Tieu, Minh Thi, Parker, Joel, Dowling, Jason A., Arm, Jameen, Best, Leah, Greer, Peter B., Clapham, Matthew, Oldmeadow, Christopher, O’Connor, Laura and Wratten, Chris (2022). Assessing the impact of magnetic resonance treatment simulation (MRSIM) on target volume delineation and dose to organs at risk for oropharyngeal radiotherapy. Journal of Medical Radiation Sciences, 69 (1), 66-74. doi: 10.1002/jmrs.552

A statistical, voxelised model of prostate cancer for biologically optimised radiotherapy

Finnegan, Robert N., Reynolds, Hayley M., Ebert, Martin A., Sun, Yu, Holloway, Lois, Sykes, Jonathan R., Dowling, Jason, Mitchell, Catherine, Williams, Scott G., Murphy, Declan G. and Haworth, Annette (2022). A statistical, voxelised model of prostate cancer for biologically optimised radiotherapy. Physics and Imaging in Radiation Oncology, 21, 136-145. doi: 10.1016/j.phro.2022.02.011

Automated COVID-19 diagnosis and prognosis with medical imaging and who is publishing: a systematic review

Gillman, Ashley G., Lunardo, Febrio, Prinable, Joseph, Belous, Gregg, Nicolson, Aaron, Min, Hang, Terhorst, Andrew and Dowling, Jason A. (2022). Automated COVID-19 diagnosis and prognosis with medical imaging and who is publishing: a systematic review. Physical and Engineering Sciences in Medicine, 45 (1), 13-29. doi: 10.1007/s13246-021-01093-0

Training radiomics-based CNNs for clinical outcome prediction: Challenges, strategies and findings

Pang, Shuchao, Field, Matthew, Dowling, Jason, Vinod, Shalini, Holloway, Lois and Sowmya, Arcot (2022). Training radiomics-based CNNs for clinical outcome prediction: Challenges, strategies and findings. Artificial Intelligence in Medicine, 123 102230, 102230. doi: 10.1016/j.artmed.2021.102230

Optimisation and validation of an integrated magnetic resonance imaging-only radiotherapy planning solution

O'Connor, Laura M., Skehan, Kate, Choi, Jae H., Simpson, John, Martin, Jarad, Warren-Forward, Helen, Dowling, Jason and Greer, Peter (2021). Optimisation and validation of an integrated magnetic resonance imaging-only radiotherapy planning solution. Physics and Imaging in Radiation Oncology, 20, 34-39. doi: 10.1016/j.phro.2021.10.001

Automatic radiotherapy delineation quality assurance on prostate MRI with deep learning in a multicentre clinical trial

Min, Hang, Dowling, Jason, Jameson, Michael G, Cloak, Kirrily, Faustino, Joselle, Sidhom, Mark, Martin, Jarad, Ebert, Martin A, Haworth, Annette, Chlap, Phillip, de Leon, Jeremiah, Berry, Megan, Pryor, David, Greer, Peter, Vinod, Shalini K and Holloway, Lois (2021). Automatic radiotherapy delineation quality assurance on prostate MRI with deep learning in a multicentre clinical trial. Physics in Medicine and Biology, 66 (19) 195008, 195008. doi: 10.1088/1361-6560/ac25d5

Deep learning for segmentation in radiation therapy planning: a review

Samarasinghe, Gihan, Jameson, Michael, Vinod, Shalini, Field, Matthew, Dowling, Jason, Sowmya, Arcot and Holloway, Lois (2021). Deep learning for segmentation in radiation therapy planning: a review. Journal of Medical Imaging and Radiation Oncology, 65 (5), 578-595. doi: 10.1111/1754-9485.13286

A review of medical image data augmentation techniques for deep learning applications

Chlap, Phillip, Min, Hang, Vandenberg, Nym, Dowling, Jason, Holloway, Lois and Haworth, Annette (2021). A review of medical image data augmentation techniques for deep learning applications. Journal of Medical Imaging and Radiation Oncology, 65 (5), 545-563. doi: 10.1111/1754-9485.13261

Validation of a new open-source method for automatic delineation and dose assessment of the heart and LADCA in breast radiotherapy with simultaneous uncertainty estimation

Finnegan, Robert, Laugaard Lorenzen, Ebbe, Dowling, Jason, Thwaites, David, Delaney, Geoff, Brink, Carsten and Holloway, Lois (2021). Validation of a new open-source method for automatic delineation and dose assessment of the heart and LADCA in breast radiotherapy with simultaneous uncertainty estimation. Physics in Medicine & Biology, 66 (3) 035014, 035014. doi: 10.1088/1361-6560/abcb1d

Feasibility of using a novel automatic cardiac segmentation algorithm in the clinical routine of lung cancer patients

Finnegan, Robert Neil, Orlandini, Lucia, Liao, Xiongfei, Yin, Jun, Lang, Jinyi, Dowling, Jason and Fontanarosa, Davide (2021). Feasibility of using a novel automatic cardiac segmentation algorithm in the clinical routine of lung cancer patients. PLoS One, 16 (1) e0245364, 1-14. doi: 10.1371/journal.pone.0245364

Measurements of human tolerance to horizontal rotation within an MRI scanner: towards gantry‐free radiation therapy

Buckley, Jarryd G., Smith, Allan “Ben”, Sidhom, Mark, Rai, Robba, Liney, Gary P., Dowling, Jason A., Metcalfe, Peter E., Holloway, Lois C. and Keall, Paul J. (2020). Measurements of human tolerance to horizontal rotation within an MRI scanner: towards gantry‐free radiation therapy. Journal of Medical Imaging and Radiation Oncology, 65 (1), 112-119. doi: 10.1111/1754-9485.13130

Analysis of cardiac substructure dose in a large, multi-centre danish breast cancer cohort (the DBCG HYPO trial): Trends and predictive modelling

Finnegan, Robert, Lorenzen, Ebbe Laugaard, Dowling, Jason, Jensen, Ingelise, Berg, Martin, Thomsen, Mette Skovhus, Delaney, Geoff P., Koh, Eng-Siew, Thwaites, David, Brink, Carsten, Offersen, Birgitte Vrou and Holloway, Lois (2020). Analysis of cardiac substructure dose in a large, multi-centre danish breast cancer cohort (the DBCG HYPO trial): Trends and predictive modelling. Radiotherapy and Oncology, 153, 130-138. doi: 10.1016/j.radonc.2020.09.004

Deformable image registration in radiation therapy

Dowling, Jason A. and O’Connor, Laura M. (2020). Deformable image registration in radiation therapy. Journal of Medical Radiation Sciences, 67 (4), 257-259. doi: 10.1002/jmrs.446

Reduced dose posterior to prostate correlates with increased PSA progression in voxel-based analysis of 3 randomized phase 3 trials

Marcello, Marco, Denham, James W., Kennedy, Angel, Haworth, Annette, Steigler, Allison, Greer, Peter B., Holloway, Lois C., Dowling, Jason A., Jameson, Michael G., Roach, Dale, Joseph, David J., Gulliford, Sarah L., Dearnaley, David P., Sydes, Matthew R., Hall, Emma and Ebert, Martin A. (2020). Reduced dose posterior to prostate correlates with increased PSA progression in voxel-based analysis of 3 randomized phase 3 trials. International Journal of Radiation Oncology*Biology*Physics, 108 (5), 1304-1318. doi: 10.1016/j.ijrobp.2020.07.030

Pelvic organ motion and dosimetric implications during horizontal patient rotation for prostate radiation therapy

Buckley, J. G., Dowling, J. A., Sidhom, M., Liney, G. P., Rai, R., Metcalfe, P. E., Holloway, L. C. and Keall, P. J. (2020). Pelvic organ motion and dosimetric implications during horizontal patient rotation for prostate radiation therapy. Medical Physics, 48 (1), 397-413. doi: 10.1002/mp.14579

Relationships between rectal and perirectal doses and rectal bleeding or tenesmus in pooled voxel-based analysis of 3 randomised phase III trials

Marcello, Marco, Denham, James W., Kennedy, Angel, Haworth, Annette, Steigler, Allison, Greer, Peter B., Holloway, Lois C., Dowling, Jason A., Jameson, Michael G., Roach, Dale, Joseph, David J., Gulliford, Sarah L., Dearnaley, David P., Sydes, Mathew R., Hall, Emma and Ebert, Martin A. (2020). Relationships between rectal and perirectal doses and rectal bleeding or tenesmus in pooled voxel-based analysis of 3 randomised phase III trials. Radiotherapy and Oncology, 150, 281-292. doi: 10.1016/j.radonc.2020.07.048

Variations of Clinical Target Volume Delineation for Primary Site of Nasopharyngeal Cancer Among Five Centers in China

Zhang, Shichuan, Yang, Shuang, Xu, Peng, Xu, Yun, Zhou, Guanqun, Ou, Xiaomin, Wu, Runye, Lan, Mei, Fontanarosa, Davide, Dowling, Jason, Wang, Xiaoshen, Lin, Shaojun, Yi, Jun-Lin, Sun, Ying, Hu, Chaosu and Lang, Jinyi (2020). Variations of Clinical Target Volume Delineation for Primary Site of Nasopharyngeal Cancer Among Five Centers in China. Frontiers in Oncology, 10 1572. doi: 10.3389/fonc.2020.01572

Voxel‐based supervised machine learning of peripheral zone prostate cancer using noncontrast multiparametric MRI

Gholizadeh, Neda, Simpson, John, Ramadan, Saadallah, Denham, Jim, Lau, Peter, Siddique, Sabbir, Dowling, Jason, Welsh, James, Chalup, Stephan and Greer, Peter B. (2020). Voxel‐based supervised machine learning of peripheral zone prostate cancer using noncontrast multiparametric MRI. Journal of Applied Clinical Medical Physics, 21 (10), 179-191. doi: 10.1002/acm2.12992

Increased Dose to Organs in Urinary Tract Associates With Measures of Genitourinary Toxicity in Pooled Voxel-Based Analysis of 3 Randomized Phase III Trials

Marcello, Marco, Denham, James W., Kennedy, Angel, Haworth, Annette, Steigler, Allison, Greer, Peter B., Holloway, Lois C., Dowling, Jason A., Jameson, Michael G., Roach, Dale, Joseph, David J., Gulliford, Sarah L., Dearnaley, David P., Sydes, Matthew R., Hall, Emma and Ebert, Martin A. (2020). Increased Dose to Organs in Urinary Tract Associates With Measures of Genitourinary Toxicity in Pooled Voxel-Based Analysis of 3 Randomized Phase III Trials. Frontiers in Oncology, 10. doi: 10.3389/fonc.2020.01174

Localised delineation uncertainty for iterative atlas selection in automatic cardiac segmentation

Finnegan, Robert, Lorenzen, Ebbe, Dowling, Jason, Holloway, Lois, Thwaites, David and Brink, Carsten (2020). Localised delineation uncertainty for iterative atlas selection in automatic cardiac segmentation. Physics in Medicine and Biology, 65 (3) 035011. doi: 10.1088/1361-6560/ab652a

Comparison of deep learning-based and patch-based methods for pseudo-CT generation in MRI-based prostate dose planning

Largent, Axel, Barateau, Anaïs, Nunes, Jean-Claude, Mylona, Eugenia, Castelli, Joël, Lafond, Caroline, Greer, Peter B., Dowling, Jason A., Baxter, John, Saint-Jalmes, Hervé, Acosta, Oscar and de Crevoisier, Renaud (2019). Comparison of deep learning-based and patch-based methods for pseudo-CT generation in MRI-based prostate dose planning. International Journal of Radiation Oncology Biology Physics, 105 (5), 1137-1150. doi: 10.1016/j.ijrobp.2019.08.049

Bulk anatomical density based dose calculation for patient-specific quality assurance of MRI-only prostate radiotherapy

Choi, Jae Hyuk, Lee, Danny, O'Connor, Laura, Chalup, Stephan, Welsh, James S., Dowling, Jason and Greer, Peter B. (2019). Bulk anatomical density based dose calculation for patient-specific quality assurance of MRI-only prostate radiotherapy. Frontiers in Oncology, 9 997. doi: 10.3389/fonc.2019.00997

Opportunities in space life sciences

Dowling, Jason, Rosenfeld, Anatoly, Waldie, James and Feain, Ilana (2019). Opportunities in space life sciences. Australasian Physical and Engineering Sciences in Medicine, 42 (3), 663-664. doi: 10.1007/s13246-019-00769-y

Anatomical deformation due to horizontal rotation: Towards gantry-free radiation therapy

Buckley, J. G., Rai, R., Liney, G. P., Dowling, J. A., Holloway, L. C., Metcalfe, P. E. and Keall, P. J. (2019). Anatomical deformation due to horizontal rotation: Towards gantry-free radiation therapy. Physics in Medicine and Biology, 64 (17) 175014. doi: 10.1088/1361-6560/ab324c

Similarity clustering-based atlas selection for pelvic CT image segmentation

Kennedy, Angel, Dowling, Jason, Greer, Peter B, Holloway, Lois, Jameson, Michael G, Roach, Dale, Ghose, Soumya, Rivest-Hénault, David, Marcello, Marco and Ebert, Martin A (2019). Similarity clustering-based atlas selection for pelvic CT image segmentation. Medical Physics, 46 (5), 2243-2250. doi: 10.1002/mp.13494

Feasibility of multi-atlas cardiac segmentation from thoracic planning CT in a probabilistic framework

Finnegan, Robert, Dowling, Jason, Koh, Eng-Siew, Tang, Simon, Otton, James, Delaney, Geoff, Batumalai, Vikneswary, Luo, Carol, Atluri, Pramukh, Satchithanandha, Athiththa, Thwaites, David and Holloway, Lois (2019). Feasibility of multi-atlas cardiac segmentation from thoracic planning CT in a probabilistic framework. Physics in Medicine and Biology, 64 (8) 085006. doi: 10.1088/1361-6560/ab0ea6

Dedicated MRI simulation for cervical cancer radiation treatment planning: Assessing the impact on clinical target volume delineation

Veera, Jacqueline, Lim, Karen, Dowling, Jason A., O'Connor, Chelsie, Holloway, Lois C. and Vinod, Shalini K. (2019). Dedicated MRI simulation for cervical cancer radiation treatment planning: Assessing the impact on clinical target volume delineation. Journal of Medical Imaging and Radiation Oncology, 63 (2), 236-243. doi: 10.1111/1754-9485.12831

Reduced motion and improved rectal dosimetry through endorectal immobilization for prostate stereotactic body radiotherapy

De Leon, Jeremiah, Jameson, Michael G., Rivest-Henault, David, Keats, Sarah, Rai, Robba, Arumugam, Sankar, Wilton, Lee, Ngo, Diana, Liney, Gary, Moses, Daniel, Dowling, Jason, Martin, Jarad and Sidhom, Mark (2019). Reduced motion and improved rectal dosimetry through endorectal immobilization for prostate stereotactic body radiotherapy. British Journal of Radiology, 92 (1098) 20190056. doi: 10.1259/bjr.20190056

Pseudo-CT generation for MRI-only radiation therapy treatment planning: Comparison among patch-based, atlas-based, and bulk density methods

Largent, Axel, Barateau, Anaïs, Nunes, Jean-Claude, Lafond, Caroline, Greer, Peter B., Dowling, Jason A., Saint-Jalmes, Hervé, Acosta, Oscar and de Crevoisier, Renaud (2019). Pseudo-CT generation for MRI-only radiation therapy treatment planning: Comparison among patch-based, atlas-based, and bulk density methods. International Journal of Radiation Oncology Biology Physics, 103 (2), 479-490. doi: 10.1016/j.ijrobp.2018.10.002

Multi-observer contouring of male pelvic anatomy: highly variable agreement across conventional and emerging structures of interest

Roach, Dale, Holloway, Lois C, Jameson, Michael G, Dowling, Jason A, Kennedy, Angel, Greer, Peter B, Krawiec, Michele, Rai, Robba, Denham, Jim, De Leon, Jeremiah, Lim, Karen, Berry, Megan E, White, Rohen T, Bydder, Sean A, Tan, Hendrick T, Croker, Jeremy D, McGrath, Alycea, Matthews, John, Smeenk, Robert J and Ebert, Martin A (2019). Multi-observer contouring of male pelvic anatomy: highly variable agreement across conventional and emerging structures of interest. Journal of Medical Imaging and Radiation Oncology, 63 (2), 264-271. doi: 10.1111/1754-9485.12844

A multi-center prospective study for implementation of an MRI-only prostate treatment planning workflow

Greer, Peter, Martin, Jarad, Sidhom, Mark, Hunter, Perry, Pichler, Peter, Choi, Jae Hyuk, Best, Leah, Smart, Joanne, Young, Tony, Jameson, Michael, Afinidad, Tess, Wratten, Chris, Denham, James, Holloway, Lois, Sridharan, Swetha, Rai, Robba, Liney, Gary, Raniga, Parnesh and Dowling, Jason (2019). A multi-center prospective study for implementation of an MRI-only prostate treatment planning workflow. Frontiers in Oncology, 9 (AUG) 826. doi: 10.3389/fonc.2019.00826

Characterization of prostate cancer using diffusion tensor imaging: A new perspective

Gholizadeh, Neda, Greer, Peter B., Simpson, John, Denham, Jim, Lau, Peter, Dowling, Jason, Hondermarck, Hubert and Ramadan, Saadallah (2019). Characterization of prostate cancer using diffusion tensor imaging: A new perspective. European Journal of Radiology, 110, 112-120. doi: 10.1016/j.ejrad.2018.11.026

TROG 18.01 phase III randomised clinical trial of the Novel Integration of New prostate radiation schedules with adJuvant Androgen deprivation: NINJA study protocol

Martin, Jarad, Keall, Paul, Siva, Shankar, Greer, Peter, Christie, David, Moore, Kevin, Dowling, Jason, Pryor, David, Chong, Peter, McLeod, Nicholas, Raman, Avi, Lynam, James, Smart, Joanne, Oldmeadow, Christopher, Tang, Colin I., Murphy, Declan G., Millar, Jeremy, Tai, Keen Hun, Holloway, Lois, Reeves, Penny, Hayden, Amy, Lim, Tee, Holt, Tanya and Sidhom, Mark (2019). TROG 18.01 phase III randomised clinical trial of the Novel Integration of New prostate radiation schedules with adJuvant Androgen deprivation: NINJA study protocol. BMJ Open, 9 (8) e030731. doi: 10.1136/bmjopen-2019-030731

Comparative study of algorithms for synthetic CT generation from MRI: Consequences for MRI-guided radiation planning in the pelvic region

Arabi, Hossein, Dowling, Jason A., Burgos, Ninon, Han, Xiao, Greer, Peter B., Koutsouvelis, Nikolaos and Zaidi, Habib (2018). Comparative study of algorithms for synthetic CT generation from MRI: Consequences for MRI-guided radiation planning in the pelvic region. Medical Physics, 45 (11), 5218-5233. doi: 10.1002/mp.13187

Estimation of Hounsfield unit conversion parameters for pelvic CT images

Kennedy, Angel, Dowling, Jason, Greer, Peter B. and Ebert, Martin A. (2018). Estimation of Hounsfield unit conversion parameters for pelvic CT images. Australasian Physical and Engineering Sciences in Medicine, 41 (3), 739-745. doi: 10.1007/s13246-018-0651-x

A lightweight rapid application development framework for biomedical image analysis

Chandra, Shekhar S., Dowling, Jason A., Engstrom, Craig, Xia, Ying, Paproki, Anthony, Neubert, Aleš, Rivest-Hénault, David, Salvado, Olivier, Crozier, Stuart and Fripp, Jurgen (2018). A lightweight rapid application development framework for biomedical image analysis. Computer Methods and Programs in Biomedicine, 164, 193-205. doi: 10.1016/j.cmpb.2018.07.011

Correlations between contouring similarity metrics and simulated treatment outcome for prostate radiotherapy

Roach, D., Jameson, M. G., Dowling, J. A., Ebert, M. A., Greer, P. B., Kennedy, A. M., Watt, S. and Holloway, L. C. (2018). Correlations between contouring similarity metrics and simulated treatment outcome for prostate radiotherapy. Physics in Medicine and Biology, 63 (3) 035001. doi: 10.1088/1361-6560/aaa50c

Intensity-based dual model method for generation of synthetic CT images from standard T2-weighted MR images – Generalized technique for four different MR scanners

Koivula, Lauri, Kapanen, Mika, Seppälä, Tiina, Collan, Juhani, Dowling, Jason A., Greer, Peter B., Gustafsson, Christian, Gunnlaugsson, Adalsteinn, Olsson, Lars E., Wee, Leonard and Korhonen, Juha (2017). Intensity-based dual model method for generation of synthetic CT images from standard T2-weighted MR images – Generalized technique for four different MR scanners. Radiotherapy and Oncology, 125 (3), 411-419. doi: 10.1016/j.radonc.2017.10.011

Radiotherapy dose-distribution to the perirectal fat space (PRS) is related to gastrointestinal control-related complications

Gulliford, S. L., Ghose, S., Ebert, M. A., Kennedy, A., Dowling, J., Mitra, J., Joseph, D. J. and Denham, J. W. (2017). Radiotherapy dose-distribution to the perirectal fat space (PRS) is related to gastrointestinal control-related complications. Clinical and Translational Radiation Oncology, 7, 62-70. doi: 10.1016/j.ctro.2017.10.002

Investigating the generalisation of an atlas-based synthetic-CT algorithm to another centre and MR scanner for prostate MR-only radiotherapy

Wyatt, Jonathan J., Dowling, Jason A., Kelly, Charles G., McKenna, Jill, Johnstone, Emily, Speight, Richard, Henry, Ann, Greer, Peter B. and McCallum, Hazel M. (2017). Investigating the generalisation of an atlas-based synthetic-CT algorithm to another centre and MR scanner for prostate MR-only radiotherapy. Physics in Medicine and Biology, 62 (24), N548-N560. doi: 10.1088/1361-6560/aa9676

Regression and statistical shape model based substitute CT generation for MRI alone external beam radiation therapy from standard clinical MRI sequences

Ghose, Soumya, Greer, Peter B., Sun, Jidi, Pichler, Peter, Rivest-Henault, David, Mitra, Jhimli, Richardson, Haylea, Wratten, Chris, Martin, Jarad, Arm, Jameen, Best, Leah and Dowling, Jason A. (2017). Regression and statistical shape model based substitute CT generation for MRI alone external beam radiation therapy from standard clinical MRI sequences. Physics in Medicine and Biology, 62 (22), 8566-8580. doi: 10.1088/1361-6560/aa9104

Substitute CT generation from a single ultra short time echo MRI sequence: Preliminary study

Ghose, Soumya, Dowling, Jason A., Rai, Robba and Liney, Gary P. (2017). Substitute CT generation from a single ultra short time echo MRI sequence: Preliminary study. Physics in Medicine and Biology, 62 (8), 2950-2960. doi: 10.1088/1361-6560/aa508a

An MRI-compatible patient rotation system - Design, construction, and first organ deformation results

Whelan, Brendan, Liney, Gary P., Dowling, Jason A., Rai, Robba, Holloway, Lois, McGarvie, Leigh, Feain, Ilana, Barton, Michael, Berry, Megan, Wilkins, Rob and Keall, Paul (2017). An MRI-compatible patient rotation system - Design, construction, and first organ deformation results. Medical Physics, 44 (2), 581-588. doi: 10.1002/mp.12065

Multi-atlas and unsupervised learning approach to perirectal space segmentation in CT images

Ghose, Soumya, Denham, James W., Ebert, Martin A., Kennedy, Angel, Mitra, Jhimli and Dowling, Jason A. (2016). Multi-atlas and unsupervised learning approach to perirectal space segmentation in CT images. Physical and Engineering Sciences in Medicine, 39 (4), 933-941. doi: 10.1007/s13246-016-0496-0

Fast automated segmentation of multiple objects via spatially weighted shape learning

Chandra, Shekhar S., Dowling, Jason A., Greer, Peter B., Martin, Jarad, Wratten, Chris, Pichler, Peter, Fripp, Jurgen and Crozier, Stuart (2016). Fast automated segmentation of multiple objects via spatially weighted shape learning. Physics in Medicine and Biology, 61 (22), 8070-8084. doi: 10.1088/0031-9155/61/22/8070

MRI geometric distortion: Impact on tangential whole-breast IMRT

Walker, Amy, Metcalfe, Peter, Liney, Gary, Batumalai, Vikneswary, Dundas, Kylie, Glide-Hurst, Carri, Delaney, Geoff P., Boxer, Miriam, Yap, Mei Ling, Dowling, Jason, Rivest-Henault, David, Pogson, Elise and Holloway, Lois (2016). MRI geometric distortion: Impact on tangential whole-breast IMRT. Journal of Applied Clinical Medical Physics, 17 (5), 7-19. doi: 10.1120/jacmp.v17i5.6242

MRI-alone radiation therapy planning for prostate cancer: Automatic fiducial marker detection

Ghose, Soumya, Mitra, Jhimli, Rivest-Hénault, David, Fazlollahi, Amir, Stanwell, Peter, Pichler, Peter, Sun, Jidi, Fripp, Jurgen, Greer, Peter B. and Dowling, Jason A. (2016). MRI-alone radiation therapy planning for prostate cancer: Automatic fiducial marker detection. Medical Physics, 43 (5), 2218-2228. doi: 10.1118/1.4944871

Automatic substitute computed tomography generation and contouring for magnetic resonance imaging (MRI)-alone external beam radiation therapy from standard MRI sequences

Dowling, Jason A., Sun, Jidi, Pichler, Peter, Rivest-Hénault, David, Ghose, Soumya, Richardson, Haylea, Wratten, Chris, Martin, Jarad, Arm, Jameen, Best, Leah, Chandra, Shekhar S., Fripp, Jurgen, Menk, Frederick W. and Greer, Peter B. (2015). Automatic substitute computed tomography generation and contouring for magnetic resonance imaging (MRI)-alone external beam radiation therapy from standard MRI sequences. International Journal of Radiation Oncology Biology Physics, 93 (5), 1144-1153. doi: 10.1016/j.ijrobp.2015.08.045

A review of segmentation and deformable registration methods applied to adaptive cervical cancer radiation therapy treatment planning

Ghose, Soumya, Holloway, Lois, Lim, Karen, Chan, Philip, Veera, Jacqueline, Vinod, Shalini K., Liney, Gary, Greer, Peter B. and Dowling, Jason (2015). A review of segmentation and deformable registration methods applied to adaptive cervical cancer radiation therapy treatment planning. Artificial Intelligence in Medicine, 64 (2), 75-87. doi: 10.1016/j.artmed.2015.04.006

Continuous table acquisition MRI for radiotherapy treatment planning: Distortion assessment with a new extended 3D volumetric phantom

Walker, Amy, Liney, Gary, Holloway, Lois, Dowling, Jason, Rivest-Henault, David and Metcalfe, Peter (2015). Continuous table acquisition MRI for radiotherapy treatment planning: Distortion assessment with a new extended 3D volumetric phantom. Medical Physics, 42 (4), 1982-1991. doi: 10.1118/1.4915920

Investigation on the performance of dedicated radiotherapy positioning devices for MR scanning for prostate planning

Sun, Jidi, Dowling, Jason A., Pichler, Peter, Parker, Joel, Martin, Jarad, Stanwell, Peter, Arm, Jameen, Menk, Fred and Greer, Peter B. (2015). Investigation on the performance of dedicated radiotherapy positioning devices for MR scanning for prostate planning. Journal of Applied Clinical Medical Physics, 16 (2), 4-13. doi: 10.1120/jacmp.v16i2.4848

MR simulation for prostate radiation therapy: Effect of coil mounting position on image quality

Sun, J., Pichler, P., Dowling, J., Menk, F., Stanwell, P., Arm, J. and Greer, P. B. (2014). MR simulation for prostate radiation therapy: Effect of coil mounting position on image quality. British Journal of Radiology, 87 (1042) 20140325. doi: 10.1259/bjr.20140325

Evaluation of prostate segmentation algorithms for MRI: The PROMISE12 challenge

Litjens, Geert, Toth, Robert, van de Ven, Wendy, Hoeks, Caroline, Kerkstra, Sjoerd, van Ginneken, Bram, Vincent, Graham, Guillard, Gwenael, Birbeck, Neil, Zhang, Jindang, Strand, Robin, Malmberg, Filip, Ou, Yangming, Davatzikos, Christos, Kirschner, Matthias, Jung, Florian, Yuan, Jing, Qiu, Wu, Gao, Qinquan, Edwards, Philip Eddie, Maan, Bianca, van der Heijden, Ferdinand, Ghose, Soumya, Mitra, Jhimli, Dowling, Jason, Barratt, Dean, Huisman, Henkjan and Madabhushi, Anant (2014). Evaluation of prostate segmentation algorithms for MRI: The PROMISE12 challenge. Medical Image Analysis, 18 (2), 359-373. doi: 10.1016/j.media.2013.12.002

An atlas-based electron density mapping method for magnetic resonance imaging (MRI)-alone treatment planning and adaptive MRI-based prostate radiation therapy

Dowling, Jason A., Lambert, Jonathan, Parker, Joel, Salvado, Olivier, Fripp, Jurgen, Capp, Anne, Wratten, Chris, Denham, James W. and Greer, Peter B. (2012). An atlas-based electron density mapping method for magnetic resonance imaging (MRI)-alone treatment planning and adaptive MRI-based prostate radiation therapy. International Journal of Radiation: Oncology - Biology - Physics, 83 (1), E5-E11. doi: 10.1016/j.ijrobp.2011.11.056

MRI-guided prostate radiation therapy planning: Investigation of dosimetric accuracy of MRI-based dose planning

Lambert, Jonathan, Greer, Peter B., Menk, Fred, Patterson, Jackie, Parker, Joel, Dahl, Kara, Gupta, Sanjiv, Capp, Anne, Wratten, Chris, Tang, Colin, Kumar, Mahesh, Dowling, Jason, Hauville, Sarah, Hughes, Cynthia, Fisher, Kristen, Lau, Peter, Denham, James W. and Salvado, Olivier (2011). MRI-guided prostate radiation therapy planning: Investigation of dosimetric accuracy of MRI-based dose planning. Radiotherapy and Oncology, 98 (3), 330-334. doi: 10.1016/j.radonc.2011.01.012

Distal radius fracture classification using deep learning algorithms

White, J., Wadhawan, A., Min, H., Rabi, Y., Schmutz, B., Dowling, J., Tchernegovski, A., Bourgeat, P., Tetsworth, K., Fripp, J., Mitchell, G., Hacking, C., Williamson, F. and Schuetz, M. (2023). Distal radius fracture classification using deep learning algorithms. The New Zealand Orthopaedic Association and the Australian Orthopaedic Association (NZOA AOA) Combined Annual Scientific Meeting, Christchurch, New Zealand, 31 October – 3 November 2022. London, United Kingdom: British Editorial Society of Bone and Joint Surgery. doi: 10.1302/1358-992x.2023.2.102

CSIRO at ImageCLEFmedical Caption 2022

Lebrat, Leo, Nicolson, Aaron, Santa Cruz, Rodrigo, Belous, Gregg, Koopman, Bevan and Dowling, Jason (2022). CSIRO at ImageCLEFmedical Caption 2022. CEUR-WS.

CSIRO at the ImageCLEFmed 2022 Tuberculosis Caverns Detection Challenge: A 2D and 3D Deep Learning Detection Network Approach

Xin, Bowen, Min, Hang, Gillman, Ashley G., Koopman, Bevan, Dowling, Jason and Nicolson, Aaron (2022). CSIRO at the ImageCLEFmed 2022 Tuberculosis Caverns Detection Challenge: A 2D and 3D Deep Learning Detection Network Approach. CEUR-WS.

Mobility assessment using simulated Arti.cial Human Vision

Dowling, J., Boles, W. and Maeder, A. (2022). Mobility assessment using simulated Arti.cial Human Vision. IEEE. doi: 10.1109/cvpr.2005.494

Voxel-wise analysis for spatial characterisation of pseudo-CT errors in MRI-only radiotherapy planning

Chourak, Hilda, Barateau, Anais, Mylona, Eugenia, Cadin, Capucine, Lafond, Caroline, Greer, Peter, Dowling, Jason, Jean-Claude-Nunes, , Crevoisier, Renaud de and Acosta, Oscar (2021). Voxel-wise analysis for spatial characterisation of pseudo-CT errors in MRI-only radiotherapy planning. IEEE 18th International Symposium on Biomedical Imaging (ISBI), Nice, France, 13-16 April 2021. Piscataway, NJ, United States: IEEE. doi: 10.1109/isbi48211.2021.9433800

AEHRC CSIRO at ImageCLEFmed caption 2021

Nicolson, Aaron, Dowling, Jason and Koopman, Bevan (2021). AEHRC CSIRO at ImageCLEFmed caption 2021. CEUR-WS.

Advanced Propulsion as a Cornerstone for Space Exploration and Interstellar Living

Tonina, Tommaso, Alshehhi, Hamda, Dowling, Jason, Jamanca-Lino, Gustavo, Kennedy, Erin, Kucher, Yelyzaveta, Rijin, K. V. and Norber, Itai (2021). Advanced Propulsion as a Cornerstone for Space Exploration and Interstellar Living. International Astronautical Federation, IAF.

Pseudo-CT generation for mri-only radiotherapy: comparative study between a generative adversarial network, a u-net network, a patch-based, and an atlas based methods

Largent, Axel, Nunes, Jean-Claude, Saint-Jalmes, Herve, Baxter, John, Greer, Peter, Dowling, Jason, Crevoisier, Renaud De and Acosta, Oscar (2019). Pseudo-CT generation for mri-only radiotherapy: comparative study between a generative adversarial network, a u-net network, a patch-based, and an atlas based methods. 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), Venice, Italy, 8-11 April 2019. New York, NY USA: IEEE Computer Society. doi: 10.1109/ISBI.2019.8759278

Comparison of synthetic CT generation algorithms for MRI-only radiation planning in the pelvic region

Arabi, Hossein, Dowling, Jason A., Burgos, Ninon, Han, Xiao, Greer, Peter B., Koutsouvelis, Nikolaos and Zaidi, Habib (2018). Comparison of synthetic CT generation algorithms for MRI-only radiation planning in the pelvic region. 2018 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC), Sydney, NSW Australia, 10-17 November 2018. Piscataway, NJ United States: Institute of Electrical and Electronics Engineers. doi: 10.1109/NSSMIC.2018.8824321

Inter-observer contouring variation of multiple pelvic structures on CT and MR for prostate cancer

Roach, D., Ebert, M.A., Jameson, M., Dowling, J.A., Kennedy, A., Greer, P. and Holloway, L. (2018). Inter-observer contouring variation of multiple pelvic structures on CT and MR for prostate cancer. ESTRO 37 - European Society for Radiotherapy & Oncology, Barcelona, Spain, 21-23 April 2018. Shannon, Ireland: Elsevier. doi: 10.1016/s0167-8140(18)31923-6

Pseudo-CT generation by conditional inference random forest for MRI-based radiotherapy treatment planning

Largent, Axel, Nunes, Jean-Claude, Saint-Jalmes, Hervé, Simon, Antoine, Perichon, Nicolas, Barateau, Anais, Hervé, Chloé, Lafond, Caroline, Greer, Peter B., Dowling, Jason A., De Crevoisier, Renaud and Acosta, Oscar (2017). Pseudo-CT generation by conditional inference random forest for MRI-based radiotherapy treatment planning. European Signal Processing Conference (EUSIPCO), Kos, Greece, 28 August - 2 September 2017. Piscataway, NJ, United States: Institute of Electrical and Electronics Engineers. doi: 10.23919/EUSIPCO.2017.8081166

Intensity based synthetic CT generation from standard T2-weighted MR images with three MR scanners

Koivula, L., Wee, L., Dowling, J., Greer, P., Seppälä, T. and Korhonen, J. (2017). Intensity based synthetic CT generation from standard T2-weighted MR images with three MR scanners. ESTRO 36 - European Society for Radiotherapy & Oncology, Vienna, Austria, 5-9 May 2017. Shannon, Ireland: Elsevier. doi: 10.1016/s0167-8140(17)30884-8

Atlas-based segmentation technique incorporating inter-observer delineation uncertainty for whole breast

Bell, L. R., Dowling, J. A., Pogson, E. M., Metcalfe, P. and Holloway, L. (2017). Atlas-based segmentation technique incorporating inter-observer delineation uncertainty for whole breast. Micro-Mini & Nano-Dosimetry & Innovative Technologies in Radiation Therapy (MMND&ITRO2016), Hobart, TAS Australia, 26–28 January 2016. Bristol, United Kingdom: Institute of Physics. doi: 10.1088/1742-6596/777/1/012002

Automatic atlas based electron density and structure contouring for MRI-based prostate radiation therapy on the cloud

Dowling, J. A., Burdett, N., Greer, P. B., Sun, J., Parker, J., Pichler, P., Stanwell, P., Chandra, S., Rivest-Henault, D., Ghose, S., Salvado, O. and Fripp, J. (2014). Automatic atlas based electron density and structure contouring for MRI-based prostate radiation therapy on the cloud. XVII International Conference on the Use of Computers in Radiation Therapy, Melbourne, Australia, 6–9 May 2013. Bristol, United Kingdom: Institute of Physics Publishing. doi: 10.1088/1742-6596/489/1/012048

Requirements for the accuracy of electron density data planning for MRI based cervix cancer treatment planning

Whelan, B., Kumar, S., Dowling, J., Lambert, J., Lim, K., Salvado, O., Begg, J., Greer, P., Vinod, S. and Holloway, L. (2012). Requirements for the accuracy of electron density data planning for MRI based cervix cancer treatment planning. 54th Annual Meeting and Exhibition of the American Association of Physicists in Medicine (AAPM), Charlotte, NC, United States, 29July-02 August 2012. College Park, MD, United States: American Association of Physicists in Medicine. doi: 10.1118/1.4735020

Visual quality assessment of watermarked medical images

Dowling, Jason A., Planitz, Birgit M., Maeder, Anthony J., Du, Jiang Du, Pham, Binh, Boyd, Colin, Chen, Shaokang, Bradley, Andrew P. and Crozier, Stuart (2007). Visual quality assessment of watermarked medical images. Medical Imaging 2007: Image Perception, Observer Performance, and Technology Assessment, San Diego, USA, 21-22 February 2007. Bellingham, Wash., U.S.A.: SPIE - International Society for Optical Engineering. doi: 10.1117/12.707571

A display framework for presenting information from a visual prosthesis

Dowling, Jason, Boles, Wageeh and Maeder, Anthony (2006). A display framework for presenting information from a visual prosthesis.

Simulated artificial human vision: The effects of spatial resolution and frame rate on mobility

Dowling, Jason, Boles, Wageeh and Maeder, Anthony (2006). Simulated artificial human vision: The effects of spatial resolution and frame rate on mobility. 4th International Conference on Active Media Technology, Brisbane Australia, Jun 07-09, 2006. AMSTERDAM: IOS PRESS.