The University of Queensland

Imaging, manipulation and optogenetics in zebrafish

Favre‐Bulle, Itia Amandine (2018). Imaging, manipulation and optogenetics in zebrafish. Cham, Switzerland: Springer. doi: 10.1007/978-3-319-96250-4

Shining Light in Mechanobiology: Optical Tweezers, Scissors, and Beyond

Stilgoe, Alexander B., Favre-Bulle, Itia A., Watson, Mark L., Gomez-Godinez, Veronica, Berns, Michael W., Preece, Daryl and Rubinsztein-Dunlop, Halina (2024). Shining Light in Mechanobiology: Optical Tweezers, Scissors, and Beyond. ACS Photonics, 11 (3), 917-940. doi: 10.1021/acsphotonics.4c00064

Optical tweezers across scales in cell biology

Favre-Bulle, Itia A. and Scott, Ethan K. (2022). Optical tweezers across scales in cell biology. Trends in Cell Biology, 32 (11), 932-946. doi: 10.1016/j.tcb.2022.05.001

Brain-wide visual habituation networks in wild type and fmr1 zebrafish

Marquez-Legorreta, Emmanuel, Constantin, Lena, Piber, Marielle, Favre-Bulle, Itia A., Taylor, Michael A., Blevins, Ann S., Giacomotto, Jean, Bassett, Dani S., Vanwalleghem, Gilles C. and Scott, Ethan K. (2022). Brain-wide visual habituation networks in wild type and fmr1 zebrafish. Nature Communications, 13 (1) 895. doi: 10.1038/s41467-022-28299-4

Contributions of luminance and motion to visual escape and habituation in larval zebrafish

Mancienne, Tessa, Marquez-Legorreta, Emmanuel, Wilde, Maya, Piber, Marielle, Favre-Bulle, Itia, Vanwalleghem, Gilles and Scott, Ethan K. (2021). Contributions of luminance and motion to visual escape and habituation in larval zebrafish. Frontiers in Neural Circuits, 15 748535, 748535. doi: 10.3389/fncir.2021.748535

Sound generation in zebrafish with bio-opto-acoustics

Favre-Bulle, Itia A., Taylor, Michael A., Marquez-Legorreta, Emmanuel, Vanwalleghem, Gilles, Poulsen, Rebecca E., Rubinsztein-Dunlop, Halina and Scott, Ethan K. (2020). Sound generation in zebrafish with bio-opto-acoustics. Nature Communications, 11 (1) 6120, 6120. doi: 10.1038/s41467-020-19982-5

Altered brain-wide auditory networks in a zebrafish model of fragile X syndrome

Constantin, Lena, Poulsen, Rebecca E., Scholz, Leandro A., Favre-Bulle, Itia A., Taylor, Michael A., Sun, Biao, Goodhill, Geoffrey J., Vanwalleghem, Gilles C. and Scott, Ethan K. (2020). Altered brain-wide auditory networks in a zebrafish model of fragile X syndrome. BMC Biology, 18 (1) 125, 125. doi: 10.1186/s12915-020-00857-6

Optical trapping in vivo: theory, practice, and applications

Favre-Bulle, Itia A., Stilgoe, Alexander B., Scott, Ethan K. and Rubinsztein-Dunlop, Halina (2019). Optical trapping in vivo: theory, practice, and applications. Nanophotonics, 8 (6), 1023-1040. doi: 10.1515/nanoph-2019-0055

Cellular-resolution imaging of vestibular processing across the larval zebrafish brain

Favre-Bulle, Itia A., Vanwalleghem, Gilles, Taylor, Michael A., Rubinsztein-Dunlop, Halina and Scott, Ethan K. (2018). Cellular-resolution imaging of vestibular processing across the larval zebrafish brain. Current Biology, 28 (23), 3711-3722. doi: 10.1016/j.cub.2018.09.060

Diffuse light-sheet microscopy for stripe-free calcium imaging of neural populations

Taylor, Michael A., Vanwalleghem, Gilles C., Favre-Bulle, Itia A and Scott, Ethan K. (2018). Diffuse light-sheet microscopy for stripe-free calcium imaging of neural populations. Journal of Biophotonics, 11 (12) e201800088, e201800088. doi: 10.1002/jbio.201800088

Luminance changes drive directional startle through a thalamic pathway

Heap, Lucy A. L., Vanwalleghem, Gilles, Thompson, Andrew W., Favre-Bulle, Itia A. and Scott, Ethan K. (2018). Luminance changes drive directional startle through a thalamic pathway. Neuron, 99 (2), 293-301.e4. doi: 10.1016/j.neuron.2018.06.013

Optical tweezers bring micromachines to biology

Favre-Bulle, I. A., Zhang, S., Kashchuk, A. V., Lenton, I. C.D., Gibson, L. J., Stilgoe, A. B., Nieminen, T. A. and Rubinsztein-Dunlop, H. (2018). Optical tweezers bring micromachines to biology. Optics and Photonics News, 29 (4), 40-47.

Optical trapping of otoliths drives vestibular behaviours in larval zebrafish

Favre-Bulle, Itia A., Stilgoe, Alexander B., Rubinsztein-Dunlop, Halina and Scott, Ethan K. (2017). Optical trapping of otoliths drives vestibular behaviours in larval zebrafish. Nature Communications, 8 (1) 630, 630. doi: 10.1038/s41467-017-00713-2

Erratum: Ultrasensitive rotating photonic probes for complex biological systems (vol 4, pg 1103, 2017)

Zhang, Shu, Gibson, Lachlan J., Stilgoe, Alexander B., Favre-Bulle, Itia A., Nieminen, Timo A. and Rubinsztein-Dunlop, Halina (2017). Erratum: Ultrasensitive rotating photonic probes for complex biological systems (vol 4, pg 1103, 2017). Optica, 4 (11), 1372-1372. doi: 10.1364/OPTICA.4.001372

Scattering of sculpted light in intact brain tissue, with implications for optogenetics

Favre-Bulle, Itia A., Preece, Daryl, Nieminen, Timo A., Heap, Lucy A., Scott, Ethan K. and Rubinsztein-Dunlop, Halina (2015). Scattering of sculpted light in intact brain tissue, with implications for optogenetics. Scientific Reports, 5 (1) 11501, 1-9. doi: 10.1038/srep11501

Optical tweezers in mechanobiology

Rubinsztein-Dunlop, Halina, Watson, Mark L., Favre-Bulle, Itia, Grant, Patrick, Nieminen, Timo A. and Stilgoe, Alexander B. (2023). Optical tweezers in mechanobiology. Optical Trapping and Optical Micromanipulation XX: SPIE Nanoscience + Engineering, San Diego, CA United States, 20-25 August 2023. Bellingham, WA United States: SPIE. doi: 10.1117/12.2682972

Sensing inertia with rotational optical tweezers

Watson, Mark L., Stilgoe, Alexander B., Favre-Bulle, Itia A., Nieminen, Timo A. and Rubinsztein-Dunlop, Halina (2023). Sensing inertia with rotational optical tweezers. SPIE. doi: 10.1117/12.2677236

Optically driven nano and micromachines in optical tweezers (Conference Presentation)

Rubinsztein-Dunlop, Halina, Armstrong, Declan, Watson, Mark, Favre-Bulle, Itia, Nieminen, Timo and Stilgoe, Alexander B. (2022). Optically driven nano and micromachines in optical tweezers (Conference Presentation). SPIE. doi: 10.1117/12.2639995

Optical manipulation for optogenetics: otoliths manipulation in zebrafish

Favre-Bulle, Itia A., Scott, Ethan and Rubinsztein-Dunlop, Halina (2016). Optical manipulation for optogenetics: otoliths manipulation in zebrafish. Conference on Biophysics, Biology, and Biophotonics - The Crossroads, San Francisco, CA, United States, 13-14 February 2016. Bellingham, WA, United States: S P I E - International Society for Optical Engineering. doi: 10.1117/12.2216554

Computational modeling of scattering of a focused beam in zebrafish brain tissue

Favre-Bulle, Itia, Nieminen, Timo A., Preece, Daryl, Heap, Lucy A., Scott, Ethan K. and Rubinsztein-Dunlop, Halina (2015). Computational modeling of scattering of a focused beam in zebrafish brain tissue. Optics and the Brain, BRAIN 2015, Vancouver, BC, Canada, 12-15 April 2015. Washington, DC, USA: OSA - The Optical Society. doi: 10.1364/BODA.2015.JT3A.34

Sensory integration in the Zebrafish brain, what are the functions of the thalamus and the cerebellum ?

Vanwalleghem, Gilles, Heap, Lucy A., Favre-Bulle, Itia, Schuster, Kevin, Thompson, Andrew and Scott, Ethan K. (2015). Sensory integration in the Zebrafish brain, what are the functions of the thalamus and the cerebellum ?. Neuroinformatics 2015, Cairns, Australia, 20-22 August, 2015. Lausanne Switzerland: Frontiers. doi: 10.3389/conf.fnins.2015.91.00018

High-speed camera system for biological applications in optical tweezing

Favre-Bulle, Itia, Preece, Daryl, Nieminen, Timo A., Heckenberg, Norman and Rubinsztein-Dunlop, Halina (2011). High-speed camera system for biological applications in optical tweezing. International Quantum Electronics Conference, IQEC 2011 and Conference on Lasers and Electro-Optics, CLEO Pacific Rim 2011, Sydney, NSW Australia, 28 August - 1 September 2011. Piscataway, NJ United States: I E E E. doi: 10.1109/IQEC-CLEO.2011.6194030

Bio-Opto-Acoustics

Favre-Bulle, Itia and Scott, Ethan (2020). Bio-Opto-Acoustics. The University of Queensland. (Dataset) doi: 10.14264/9809ff7