The University of Queensland

Egg protein profile and dynamics during embryogenesis in Haemaphysalis flava ticks

Cheng, Rong, Li, Dan, Duan, De-yong, Parry, Rhys, Cheng, Tian-yin and Liu, Lei (2023). Egg protein profile and dynamics during embryogenesis in Haemaphysalis flava ticks. Ticks and Tick-borne Diseases, 14 (4) 102180, 102180. doi: 10.1016/j.ttbdis.2023.102180

Statement in Support of: “Virology under the Microscope—a Call for Rational Discourse”

Speck, Peter, Mackenzie, Jason, Bull, Rowena A., Slobedman, Barry, Drummer, Heidi, Fraser, Johanna, Herrero, Lara, Helbig, Karla, Londrigan, Sarah, Moseley, Gregory, Prow, Natalie, Hansman, Grant, Edwards, Robert, Ahlenstiel, Chantelle, Abendroth, Allison, Tscharke, David, Hobson-Peters, Jody, Kriiger-Loterio, Robson, Parry, Rhys, Marsh, Glenn, Harding, Emma, Jacques, David A., Gartner, Matthew J., Lee, Wen Shi, McAuley, Julie, Vaz, Paola, Sainsbury, Frank, Tate, Michelle D., Sinclair, Jane ... Young, Paul (2023). Statement in Support of: “Virology under the Microscope—a Call for Rational Discourse”. mBio. doi: 10.1128/mbio.00815-23

Statement in Support of: “Virology under the Microscope—a Call for Rational Discourse”

Speck, Peter, Mackenzie, Jason, Bull, Rowena A., Slobedman, Barry, Drummer, Heidi, Fraser, Johanna, Herrero, Lara, Helbig, Karla, Londrigan, Sarah, Moseley, Gregory, Prow, Natalie, Hansman, Grant, Edwards, Robert, Ahlenstiel, Chantelle, Abendroth, Allison, Tscharke, David, Hobson-Peters, Jody, Kriiger-Loterio, Robson, Parry, Rhys, Marsh, Glenn, Harding, Emma, Jacques, David A., Gartner, Matthew J., Lee, Wen Shi, McAuley, Julie, Vaz, Paola, Sainsbury, Frank, Tate, Michelle D., Sinclair, Jane ... Young, Paul (2023). Statement in Support of: “Virology under the Microscope—a Call for Rational Discourse”. mSphere. doi: 10.1128/msphere.00165-23

Statement in Support of: “Virology under the Microscope—a Call for Rational Discourse”

Speck, Peter, Mackenzie, Jason, Bull, Rowena A., Slobedman, Barry, Drummer, Heidi, Fraser, Johanna, Herrero, Lara, Helbig, Karla, Londrigan, Sarah, Moseley, Gregory, Prow, Natalie, Hansman, Grant, Edwards, Robert, Ahlenstiel, Chantelle, Abendroth, Allison, Tscharke, David, Hobson-Peters, Jody, Kriiger-Loterio, Robson, Parry, Rhys, Marsh, Glenn, Harding, Emma, Jacques, David A., Gartner, Matthew J., Lee, Wen Shi, McAuley, Julie, Vaz, Paola, Sainsbury, Frank, Tate, Michelle D., Sinclair, Jane ... Young, Paul (2023). Statement in Support of: “Virology under the Microscope—a Call for Rational Discourse”. Journal of Virology, 97 (5). doi: 10.1128/jvi.00451-23

GPR183 antagonism reduces macrophage infiltration in influenza and SARS-CoV-2 infection

Foo, Cheng Xiang, Bartlett, Stacey, Chew, Keng Yih, Ngo, Minh Dao, Bielefeldt-Ohmann, Helle, Jayakody Arachchige, Buddhika, Matthews, Benjamin, Reed, Sarah, Wang, Ran, Smith, Christian, Sweet, Matthew J., Burr, Lucy, Bisht, Kavita, Shatunova, Svetlana, Sinclair, Jane E., Parry, Rhys, Yang, Yuanhao, Lévesque, Jean-Pierre, Khromykh, Alexander, Rosenkilde, Mette Marie, Short, Kirsty R. and Ronacher, Katharina (2023). GPR183 antagonism reduces macrophage infiltration in influenza and SARS-CoV-2 infection. European Respiratory Journal, 61 (3) 2201306, 1-15. doi: 10.1183/13993003.01306-2022

The Troublesome Ticks research protocol: developing a comprehensive, multidiscipline research plan for investigating human tick-associated diseasein Australia

Barbosa, Amanda D., Long, Michelle, Lee, Wenna, Austen, Jill M., Cunneen, Mike, Ratchford, Andrew, Burns, Brian, Kumarasinghe, Prasad, Ben-Othman, Rym, Kollmann, Tobias R., Stewart, Cameron R., Beaman, Miles, Parry, Rhys, Hall, Roy, Tabor, Ala, O’Donovan, Justine, Faddy, Helen M., Collins, Marjorie, Cheng, Allen C., Stenos, John, Graves, Stephen, Oskam, Charlotte L., Ryan, Una M. and Irwin, Peter J. (2022). The Troublesome Ticks research protocol: developing a comprehensive, multidiscipline research plan for investigating human tick-associated diseasein Australia. Pathogens, 11 (11) 1290, 1-26. doi: 10.3390/pathogens11111290

SARS-CoV-2 drives NLRP3 inflammasome activation in human microglia through spike protein

Albornoz, Eduardo A., Amarilla, Alberto A., Modhiran, Naphak, Parker, Sandra, Li, Xaria X., Wijesundara, Danushka K., Aguado, Julio, Zamora, Adriana Pliego, McMillan, Christopher L. D., Liang, Benjamin, Peng, Nias Y. G., Sng, Julian D. J., Saima, Fatema Tuj, Fung, Jenny N., Lee, John D., Paramitha, Devina, Parry, Rhys, Avumegah, Michael S., Isaacs, Ariel, Lo, Martin W., Miranda-Chacon, Zaray, Bradshaw, Daniella, Salinas-Rebolledo, Constanza, Rajapakse, Niwanthi W., Wolvetang, Ernst J., Munro, Trent P., Rojas-Fernandez, Alejandro, Young, Paul R., Stacey, Katryn J. ... Woodruff, Trent M. (2022). SARS-CoV-2 drives NLRP3 inflammasome activation in human microglia through spike protein. Molecular Psychiatry, 1-16. doi: 10.1038/s41380-022-01831-0

Comparative analysis of genome-encoded viral sequences reveals the evolutionary history of flavivirids (family Flaviviridae)

Bamford, Connor G. G., de Souza, William M., Parry, Rhys and Gifford, Robert J. (2022). Comparative analysis of genome-encoded viral sequences reveals the evolutionary history of flavivirids (family Flaviviridae). Virus Evolution, 8 (2) veac085, veac085. doi: 10.1093/ve/veac085

Reporter flaviviruses as tools to demonstrate homologous and heterologous superinfection exclusion

Torres, Francisco J., Parry, Rhys, Hugo, Leon E. , Slonchak, Andrii , Newton, Natalee D. , Vet, Laura J. , Modhiran, Naphak, Pullinger, Brody , Wang, Xiaohui , Potter, James , Winterford, Clay , Hobson-Peters, Jody , Hall, Roy A. and Khromykh, Alexander A. (2022). Reporter flaviviruses as tools to demonstrate homologous and heterologous superinfection exclusion. Viruses, 14 (7) 1501, 1501. doi: 10.3390/v14071501

Structural analysis of 3’UTRs in insect flaviviruses reveals novel determinants of sfRNA biogenesis and provides new insights into flavivirus evolution

Slonchak, Andrii, Parry, Rhys, Pullinger, Brody, Sng, Julian D. J., Wang, Xiaohui, Buck, Teresa F., Torres, Francisco J., Harrison, Jessica J., Colmant, Agathe M. G., Hobson-Peters, Jody, Hall, Roy A., Tuplin, Andrew and Khromykh, Alexander A. (2022). Structural analysis of 3’UTRs in insect flaviviruses reveals novel determinants of sfRNA biogenesis and provides new insights into flavivirus evolution. Nature Communications, 13 (1) 1279, 1-16. doi: 10.1038/s41467-022-28977-3

Mutational analysis of Aedes aegypti Dicer 2 provides insights into the biogenesis of antiviral exogenous small interfering RNAs

Gestuveo, Rommel J., Parry, Rhys, Dickson, Laura B., Lequime, Sebastian, Sreenu, Vattipally B., Arnold, Matthew J., Khromykh, Alexander A., Schnettler, Esther, Lambrechts, Louis, Varjak, Margus and Kohl, Alain (2022). Mutational analysis of Aedes aegypti Dicer 2 provides insights into the biogenesis of antiviral exogenous small interfering RNAs. PLOS Pathogens, 18 (1) e1010202, 1-29. doi: 10.1371/journal.ppat.1010202

Persistent Spodoptera frugiperda rhabdovirus infection in Sf9 cells is not restricted by Wolbachia wMelPop-CLA and wAlbB strains and is targeted by the RNAi machinery

Parry, Rhys, de Malmanche, Henry and Asgari, Sassan (2021). Persistent Spodoptera frugiperda rhabdovirus infection in Sf9 cells is not restricted by Wolbachia wMelPop-CLA and wAlbB strains and is targeted by the RNAi machinery. Virology, 563, 82-87. doi: 10.1016/j.virol.2021.08.013

No evidence of SARS-CoV-2 reverse transcription and integration as the origin of chimeric transcripts in patient tissues

Parry, Rhys, Gifford, Robert J., Lytras, Spyros, Ray, Stuart C. and Coin, Lachlan J. M. (2021). No evidence of SARS-CoV-2 reverse transcription and integration as the origin of chimeric transcripts in patient tissues. Proceedings of the National Academy of Sciences, 118 (33) e2109066118, e2109066118. doi: 10.1073/pnas.2109066118

Uncovering the worldwide diversity and evolution of the virome of the mosquitoes Aedes aegypti and Aedes albopictus

Parry, Rhys, James, Maddie E. and Asgari, Sassan (2021). Uncovering the worldwide diversity and evolution of the virome of the mosquitoes Aedes aegypti and Aedes albopictus. Microorganisms, 9 (8) 1653, 1653. doi: 10.3390/microorganisms9081653

A 1958 isolate of Kedougou Virus (KEDV) from Ndumu, South Africa, expands the geographic and temporal range of KEDV in Africa

Jansen van Vuren, Petrus , Parry, Rhys, Khromykh, Alexander A. and Paweska, Janusz T. (2021). A 1958 isolate of Kedougou Virus (KEDV) from Ndumu, South Africa, expands the geographic and temporal range of KEDV in Africa. Viruses, 13 (7) 1368, 1368. doi: 10.3390/v13071368

Human blood microRNA hsa-miR-21-5p induces vitellogenin in the mosquito Aedes aegypti

Perdomo, Hugo D., Hussain, Mazhar, Parry, Rhys, Etebari, Kayvan, Hedges, Lauren M., Zhang, Guangmei, Schulz, Benjamin L. and Asgari, Sassan (2021). Human blood microRNA hsa-miR-21-5p induces vitellogenin in the mosquito Aedes aegypti. Communications Biology, 4 (1) 856, 856. doi: 10.1038/s42003-021-02385-7

A versatile reverse genetics platform for SARS-CoV-2 and other positive-strand RNA viruses

Amarilla, Alberto A., Sng, Julian D. J., Parry, Rhys, Deerain, Joshua M., Potter, James R., Setoh, Yin Xiang, Rawle, Daniel J., Le, Thuy T., Modhiran, Naphak, Wang, Xiaohui, Peng, Nias Y. G., Torres, Francisco J., Pyke, Alyssa, Harrison, Jessica J., Freney, Morgan E., Liang, Benjamin, McMillan, Christopher L. D., Cheung, Stacey T. M., Guevara, Darwin J Da Costa, Hardy, Joshua M., Bettington, Mark, Muller, David A., Coulibaly, Fasséli, Moore, Frederick, Hall, Roy A., Young, Paul R., Mackenzie, Jason M., Hobson-Peters, Jody, Suhrbier, Andreas ... Khromykh, Alexander A. (2021). A versatile reverse genetics platform for SARS-CoV-2 and other positive-strand RNA viruses. Nature Communications, 12 (1) 3431, 3431. doi: 10.1038/s41467-021-23779-5

Transcription profile and genomic variation of Oryctes rhinoceros nudivirus (OrNV) in Coconut Rhinoceros Beetle

Etebari, Kayvan, Parry, Rhys, Beltran, Marie Joy B. and Furlong, Michael J. (2020). Transcription profile and genomic variation of Oryctes rhinoceros nudivirus (OrNV) in Coconut Rhinoceros Beetle. Journal of Virology, 94 (22) e01097-20, 1-18. doi: 10.1128/jvi.01097-20

Sequencing of historical isolates, k‐mer mining and high serological cross‐reactivity with Ross River virus argue against the presence of Getah virus in Australia

Rawle, Daniel J., Nguyen, Wilson, Dumenil, Troy, Parry, Rhys, Warrilow, David, Tang, Bing, Le, Thuy T., Slonchak, Andrii, Khromykh, Alexander A., Lutzky, Viviana P., Yan, Kexin and Suhrbier, Andreas (2020). Sequencing of historical isolates, k‐mer mining and high serological cross‐reactivity with Ross River virus argue against the presence of Getah virus in Australia. Pathogens, 9 (10) 848, 1-17. doi: 10.3390/pathogens9100848

Divergent influenza-like viruses of amphibians and fish support an ancient evolutionary association

Parry, Rhys, Wille, Michelle, Turnbull, Olivia M. H., Geoghegan, Jemma L. and Holmes, Edward C. (2020). Divergent influenza-like viruses of amphibians and fish support an ancient evolutionary association. Viruses, 12 (9) 1042, 1042. doi: 10.3390/v12091042

Viral CpG deficiency provides no evidence that dogs were intermediate hosts for SARS-CoV-2

Pollock, David D., Castoe, Todd A., Perry, Blair W., Lytras, Spyros, Wade, Kristen J., Robertson, David L., Holmes, Edward C., Boni, Maciej F., Kosakovsky Pond, Sergei L., Parry, Rhys, Carlton, Elizabeth J., Wood, James L. N., Pennings, Pleuni S. and Goldstein, Richard A. (2020). Viral CpG deficiency provides no evidence that dogs were intermediate hosts for SARS-CoV-2. Molecular Biology and Evolution, 37 (9), 2706-2710. doi: 10.1093/molbev/msaa178

Identification and RNAi profile of a novel iflavirus infecting Senegalese Aedes vexans arabiensis mosquitoes

Parry, Rhys, Naccache, Fanny, Ndiaye, El Hadji, Fall, Gamou, Castelli, Ilaria, Lühken, Renke, Medlock, Jolyon, Cull, Benjamin, Hesson, Jenny C., Montarsi, Fabrizio, Failloux, Anna-Bella, Kohl, Alain, Schnettler, Esther, Diallo, Mawlouth, Asgari, Sassan, Dietrich, Isabelle and Becker, Stefanie C. (2020). Identification and RNAi profile of a novel iflavirus infecting Senegalese Aedes vexans arabiensis mosquitoes. Viruses, 12 (4) 440, 440. doi: 10.3390/v12040440

Wolbachia endosymbiont of the horn fly Haematobia irritans irritans: a supergroup A strain with multiple horizontally acquired cytoplasmic incompatibility genes

Madhav, Mukund, Parry, Rhys, Morgan, Jess A. T., James, Peter and Asgari, Sassan (2020). Wolbachia endosymbiont of the horn fly Haematobia irritans irritans: a supergroup A strain with multiple horizontally acquired cytoplasmic incompatibility genes. Applied and Environmental Microbiology, 86 (6) e02589. doi: 10.1128/aem.02589-19

Effect of Wolbachia wAlbB on a positive-sense RNA negev-like virus: a novel virus persistently infecting Aedes albopictus mosquitoes and cells

Bishop, Cameron, Parry, Rhys and Asgari, Sassan (2019). Effect of Wolbachia wAlbB on a positive-sense RNA negev-like virus: a novel virus persistently infecting Aedes albopictus mosquitoes and cells. Journal of General Virology, 101 (2) 001361, 216-225. doi: 10.1099/jgv.0.001361

Discovery of novel crustacean and cephalopod flaviviruses: insights into evolution and circulation of flaviviruses between marine invertebrate and vertebrate hosts

Parry, Rhys and Asgari, Sassan (2019). Discovery of novel crustacean and cephalopod flaviviruses: insights into evolution and circulation of flaviviruses between marine invertebrate and vertebrate hosts. Journal of Virology, 93 (14) e00432. doi: 10.1128/JVI.00432-19

Density-dependent enhanced replication of a densovirus in Wolbachia-infected Aedes cells is associated with production of piRNAs and higher virus-derived siRNAs

Parry, Rhys, Bishop, Cameron, De Hayr, Lachlan and Asgari, Sassan (2019). Density-dependent enhanced replication of a densovirus in Wolbachia-infected Aedes cells is associated with production of piRNAs and higher virus-derived siRNAs. Virology, 528, 89-100. doi: 10.1016/j.virol.2018.12.006

Aedes Anphevirus: an insect-specific virus distributed worldwide in Aedes aegypti mosquitoes that has complex interplays with Wolbachia and dengue virus infection in cells

Parry, Rhys and Asgari, Sassan (2018). Aedes Anphevirus: an insect-specific virus distributed worldwide in Aedes aegypti mosquitoes that has complex interplays with Wolbachia and dengue virus infection in cells. Journal of Virology, 92 (17) e00224-18, JVI.00224-18. doi: 10.1128/JVI.00224-18

Mapping the virome in wild-caught Aedes aegypti from Cairns and Bangkok

Zakrzewski, Martha, Rašić, Gordana, Darbro, Jonathan, Krause, Lutz, Poo, Yee S., Filipović, Igor, Parry, Rhys, Asgari, Sassan, Devine, Greg and Suhrbier, Andreas (2018). Mapping the virome in wild-caught Aedes aegypti from Cairns and Bangkok. Scientific Reports, 8 (1) 4690, 4690. doi: 10.1038/s41598-018-22945-y

Upregulation of Aedes aegypti Vago1 by Wolbachia and its effect on dengue virus replication

Asad, Sultan, Parry, Rhys and Asgari, Sassan (2018). Upregulation of Aedes aegypti Vago1 by Wolbachia and its effect on dengue virus replication. Insect Biochemistry and Molecular Biology, 92, 45-52. doi: 10.1016/j.ibmb.2017.11.008

Endosymbionts and viromes: interplays between Wolbachia pipientis and the virome of Aedes mosquitoes

Parry, Rhys (2021). Endosymbionts and viromes: interplays between Wolbachia pipientis and the virome of Aedes mosquitoes. PhD Thesis, School of Biological Sciences, The University of Queensland. doi: 10.14264/abcdf38