The University of Queensland

Vagal Neuroinflammation Accompanying Respiratory Viral Infection: An Overview of Mechanisms and Possible Clinical Significance

Verzele, Nathalie A. J., Short, Kirsty R., Mazzone, Stuart B. and McGovern, Alice E. (2023). Vagal Neuroinflammation Accompanying Respiratory Viral Infection: An Overview of Mechanisms and Possible Clinical Significance. Visceral Pain. (pp. 27-41) Cham: Springer International Publishing. doi: 10.1007/978-3-031-25702-5_3

Nasopharyngeal colonization with Streptococcus pneumoniae

Short, Kirsty R. and Diavatopoulos, Dimitri A. (2015). Nasopharyngeal colonization with Streptococcus pneumoniae. Streptococcus Pneumoniae: molecular mechanisms of host-pathogen interactions. (pp. 279-291) edited by Jeremy Brown, Sven Hammerschmidt and Carlos Orihuela. London, United Kingdom: Academic Press. doi: 10.1016/B978-0-12-410530-0.00015-6

A robust platform for integrative spatial multi‐omics analysis to map immune responses to SARS‐CoV‐2 infection in lung tissues

Tan, Xiao, Grice, Laura F., Tran, Minh, Mulay, Onkar, Monkman, James, Blick, Tony, Vo, Tuan, Almeida, Ana Clara, da Silva Motta, Jarbas, Fernandes de Moura, Karen, Machado‐Souza, Cleber, Souza‐Fonseca‐Guimaraes, Paulo, Baena, Cristina Pellegrino, de Noronha, Lucia, Guimaraes, Fernanda Simoes Fortes, Luu, Hung N., Drennon, Tingsheng, Williams, Stephen, Stern, Jacob, Uytingco, Cedric, Pan, Liuliu, Nam, Andy, Cooper, Caroline, Short, Kirsty, Belz, Gabrielle T., Souza‐Fonseca‐Guimaraes, Fernando, Kulasinghe, Arutha and Nguyen, Quan (2023). A robust platform for integrative spatial multi‐omics analysis to map immune responses to SARS‐CoV‐2 infection in lung tissues. Immunology. doi: 10.1111/imm.13679

International pediatric COVID-19 severity over the course of the pandemic

Zhu, Yanshan, Almeida, Flávia Jacqueline, Baillie, J Kenneth, Bowen, Asha C, Britton, Philip N, Brizuela, Martin Eduardo, Buonsenso, Danilo, Burgner, David, Chew, Keng Yih, Chokephaibulkit, Kulkanya, Cohen, Cheryl, Cormier, Stephania A, Crawford, Nigel, Curtis, Nigel, Farias, Camila G A, Gilks, Charles F, von Gottberg, Anne, Hamer, Diana, Jarovsky, Daniel, Jassat, Waasila, Jesus, Ana Rita, Kemp, Lisa S, Khumcha, Benjawan, McCallum, Georgina, Miller, Jessica E, Morello, Rosa, Munro, Alasdair P S, Openshaw, Peter J M, Padmanabhan, Srivatsan ... For the International Severe Acute Respiratory Infection Consortium (ISARIC4C) groupPediatric Active Enhanced Disease Surveillance (PAEDS) Network group (2023). International pediatric COVID-19 severity over the course of the pandemic. JAMA Pediatrics, 177 (10). doi: 10.1001/jamapediatrics.2023.3117

In vivo inhibition of nuclear ACE2 translocation protects against SARS-CoV-2 replication and lung damage through epigenetic imprinting

Tu, Wen Juan, Melino, Michelle, Dunn, Jenny, McCuaig, Robert D., Bielefeldt-Ohmann, Helle, Tsimbalyuk, Sofiya, Forwood, Jade K., Ahuja, Taniya, Vandermeide, John, Tan, Xiao, Tran, Minh, Nguyen, Quan, Zhang, Liang, Nam, Andy, Pan, Liuliu, Liang, Yan, Smith, Corey, Lineburg, Katie, Nguyen, Tam H., Sng, Julian D. J., Tong, Zhen Wei Marcus, Chew, Keng Yih, Short, Kirsty R., Le Grand, Roger, Seddiki, Nabila and Rao, Sudha (2023). In vivo inhibition of nuclear ACE2 translocation protects against SARS-CoV-2 replication and lung damage through epigenetic imprinting. Nature Communications, 14 (1) 3680. doi: 10.1038/s41467-023-39341-4

SARS-CoV-2 infection and viral fusogens cause neuronal and glial fusion that compromises neuronal activity

Martínez-Mármol, Ramón, Giordano-Santini, Rosina, Kaulich, Eva, Cho, Ann-Na, Przybyla, Magdalena, Riyadh, Md Asrafuzzaman, Robinson, Emilija, Chew, Keng Yih, Amor, Rumelo, Meunier, Frédéric A., Balistreri, Giuseppe, Short, Kirsty R., Ke, Yazi D., Ittner, Lars M. and Hilliard, Massimo A. (2023). SARS-CoV-2 infection and viral fusogens cause neuronal and glial fusion that compromises neuronal activity. Science Advances, 9 (23) eadg2248, 1-15. doi: 10.1126/sciadv.adg2248

Severe respiratory viral infections: T-cell functions diverging from immunity to inflammation

Yunis, Joseph, Short, Kirsty R. and Yu, Di (2023). Severe respiratory viral infections: T-cell functions diverging from immunity to inflammation. Trends in Microbiology, 31 (6), 644-656. doi: 10.1016/j.tim.2022.12.008

Long COVID

Short, Kirsty R. (2023). Long COVID. Microbiology Australia, 44 (2), 113-114. doi: 10.1071/ma23032

The role of children in transmission of SARS-CoV-2 variants of concern within households: an updated systematic review and meta-analysis, as at 30 June 2022

Zhu, Yanshan, Xia, Yao, Pickering, Janessa, Bowen, Asha C. and Short, Kirsty R. (2023). The role of children in transmission of SARS-CoV-2 variants of concern within households: an updated systematic review and meta-analysis, as at 30 June 2022. Eurosurveillance, 28 (18), 1-17. doi: 10.2807/1560-7917.ES.2023.28.18.2200624

Macrophage ACE2 is necessary for SARS-CoV-2 replication and subsequent cytokine responses that restrict continued virion release

Labzin, Larisa I., Chew, Keng Yih, Eschke, Kathrin, Wang, Xiaohui, Esposito, Tyron, Stocks, Claudia J., Rae, James, Patrick, Ralph, Mostafavi, Helen, Hill, Brittany, Yordanov, Teodor E., Holley, Caroline L., Emming, Stefan, Fritzlar, Svenja, Mordant, Francesca L., Steinfort, Daniel P., Subbarao, Kanta, Nefzger, Christian M., Lagendijk, Anne K., Gordon, Emma J., Parton, Robert G., Short, Kirsty R., Londrigan, Sarah L. and Schroder, Kate (2023). Macrophage ACE2 is necessary for SARS-CoV-2 replication and subsequent cytokine responses that restrict continued virion release. Science Signaling, 16 (782), eabq1366. doi: 10.1126/scisignal.abq1366

Assessing the potential for fomite transmission of SARS-CoV-2

Short, Kirsty R and Cowling, Benjamin J (2023). Assessing the potential for fomite transmission of SARS-CoV-2. The Lancet Microbe, 4 (6), e380-e381. doi: 10.1016/s2666-5247(23)00099-x

Environmentally persistent free radicals enhance SARS-CoV-2 replication in respiratory epithelium

Yamamoto, Ayaho, Sly, Peter D., Chew, Keng Yih, Khachatryan, Lavrent, Begum, Nelufa, Yeo, Abrey J., Vu, Luan D, Short, Kirsty R., Cormier, Stephania A and Fantino, Emmanuelle (2023). Environmentally persistent free radicals enhance SARS-CoV-2 replication in respiratory epithelium. Experimental Biology and Medicine, 248 (3), 271-279. doi: 10.1177/15353702221142616

Pathway and network analyses identify growth factor signaling and MMP9 as potential mediators of mitochondrial dysfunction in severe COVID-19

Wang, Ya, Schughart, Klaus, Pelaia, Tiana Maria, Chew, Tracy, Kim, Karan, Karvunidis, Thomas, Knippenberg, Ben, Teoh, Sally, Phu, Amy L., Short, Kirsty R., Iredell, Jonathan, Thevarajan, Irani, Audsley, Jennifer, Macdonald, Stephen, Burcham, Jonathon, Tang, Benjamin, McLean, Anthony, Shojaei, Maryam and PREDICT-19 Consortium (2023). Pathway and network analyses identify growth factor signaling and MMP9 as potential mediators of mitochondrial dysfunction in severe COVID-19. International Journal of Molecular Sciences, 24 (3) 2524, 1-18. doi: 10.3390/ijms24032524

The swan genome and transcriptome, it is not all black and white

Karawita, Anjana C., Cheng, Yuanyuan, Chew, Keng Yih, Challagulla, Arjun, Kraus, Robert, Mueller, Ralf C., Tong, Marcus Z. W., Hulme, Katina D., Bielefeldt-Ohmann, Helle, Steele, Lauren E., Wu, Melanie, Sng, Julian, Noye, Ellesandra, Bruxner, Timothy J., Au, Gough G., Lowther, Suzanne, Blommaert, Julie, Suh, Alexander, McCauley, Alexander J., Kaur, Parwinder, Dudchenko, Olga, Aiden, Erez, Fedrigo, Olivier, Formenti, Giulio, Mountcastle, Jacquelyn, Chow, William, Martin, Fergal J., Ogeh, Denye N., Thiaud-Nissen, Françoise ... Short, Kirsty R. (2023). The swan genome and transcriptome, it is not all black and white. Genome Biology, 24 (1) 13, 1-24. doi: 10.1186/s13059-022-02838-0

Blood transcriptome responses in patients correlate with severity of COVID-19 disease

Wang, Ya, Schughart, Klaus, Pelaia, Tiana Maria, Chew, Tracy, Kim, Karan, Karvunidis, Thomas, Knippenberg, Ben, Teoh, Sally, Phu, Amy L., Short, Kirsty R., Iredell, Jonathan, Thevarajan, Irani, Audsley, Jennifer, Macdonald, Stephen, Burcham, Jonathon, McLean, Anthony, Tang, Benjamin, Shojaei, Maryam, PREDICT-19 consortium and Kulasinghe, Arutha (2023). Blood transcriptome responses in patients correlate with severity of COVID-19 disease. Frontiers in Immunology, 13 1043219, 1-18. doi: 10.3389/fimmu.2022.1043219

IFI27 transcription is an early predictor for COVID-19 outcomes, a multi-cohort observational study

Shojaei, Maryam, Shamshirian, Amir, Monkman, James, Grice, Laura, Tran, Minh, Tan, Chin Wee, Teo, Siok Min, Rodrigues Rossi, Gustavo, McCulloch, Timothy R., Nalos, Marek, Raei, Maedeh, Razavi, Alireza, Ghasemian, Roya, Gheibi, Mobina, Roozbeh, Fatemeh, Sly, Peter D., Spann, Kirsten M., Chew, Keng Yih, Zhu, Yanshan, Xia, Yao, Wells, Timothy J., Senegaglia, Alexandra Cristina, Kuniyoshi, Carmen Lúcia, Franck, Claudio Luciano, dos Santos, Anna Flavia Ribeiro, Noronha, Lucia de, Motamen, Sepideh, Valadan, Reza, Amjadi, Omolbanin ... Tang, Benjamin (2023). IFI27 transcription is an early predictor for COVID-19 outcomes, a multi-cohort observational study. Frontiers in Immunology, 13 1060438, 1-14. doi: 10.3389/fimmu.2022.1060438

GPR183 antagonism reduces macrophage infiltration in influenza and SARS-CoV-2 infection

Foo, Cheng Xiang, Bartlett, Stacey, Chew, Keng Yih, Ngo, Minh Dao, Bielefeldt-Ohmann, Helle, Jayakody Arachchige, Buddhika, Matthews, Benjamin, Reed, Sarah, Wang, Ran, Smith, Christian, Sweet, Matthew J., Burr, Lucy, Bisht, Kavita, Shatunova, Svetlana, Sinclair, Jane E., Parry, Rhys, Yang, Yuanhao, Lévesque, Jean-Pierre, Khromykh, Alexander, Rosenkilde, Mette Marie, Short, Kirsty R. and Ronacher, Katharina (2023). GPR183 antagonism reduces macrophage infiltration in influenza and SARS-CoV-2 infection. European Respiratory Journal, 61 (3) 2201306, 1-15. doi: 10.1183/13993003.01306-2022

Emulation of epidemics via Bluetooth-based virtual safe virus spread: Experimental setup, software, and data

Asanjarani, Azam, Shausan, Aminath, Chew, Keng, Graham, Thomas, Henderson, Shane G., Jansen, Hermanus M., Short, Kirsty R., Taylor, Peter G., Vuorinen, Aapeli, Yadav, Yuvraj, Ziedins, Ilze and Nazarathy, Yoni (2022). Emulation of epidemics via Bluetooth-based virtual safe virus spread: Experimental setup, software, and data. PLOS Digital Health, 1 (12), e0000142. doi: 10.1371/journal.pdig.0000142

High–temporal resolution profiling reveals distinct immune trajectories following the first and second doses of COVID-19 mRNA vaccines

Rinchai, Darawan, Deola, Sara, Zoppoli, Gabriele, Kabeer, Basirudeen Syed Ahamed, Taleb, Sara, Pavlovski, Igor, Maacha, Selma, Gentilcore, Giusy, Toufiq, Mohammed, Mathew, Lisa, Liu, Li, Vempalli, Fazulur Rehaman, Mubarak, Ghada, Lorenz, Stephan, Sivieri, Irene, Cirmena, Gabriella, Dentone, Chiara, Cuccarolo, Paola, Giacobbe, Daniele Roberto, Baldi, Federico, Garbarino, Alberto, Cigolini, Benedetta, Cremonesi, Paolo, Bedognetti, Michele, Ballestrero, Alberto, Bassetti, Matteo, Hejblum, Boris P., Augustine, Tracy, Van Panhuys, Nicholas ... PREDICT-19 Consortium (2022). High–temporal resolution profiling reveals distinct immune trajectories following the first and second doses of COVID-19 mRNA vaccines. Science Advances, 8 (45) eabp9961, 1-24. doi: 10.1126/sciadv.abp9961

Ablation of CD8+ T cell recognition of an immunodominant epitope in SARS-CoV-2 Omicron variants BA.1, BA.2 and BA.3

Swaminathan, Srividhya, Lineburg, Katie E., Panikkar, Archana, Raju, Jyothy, Murdolo, Lawton D., Szeto, Christopher, Crooks, Pauline, Le Texier, Laetitia, Rehan, Sweera, Dewar-Oldis, Michael J., Barnard, Peter J., Ambalathingal, George R., Neller, Michelle A., Short, Kirsty R., Gras, Stephanie, Khanna, Rajiv and Smith, Corey (2022). Ablation of CD8+ T cell recognition of an immunodominant epitope in SARS-CoV-2 Omicron variants BA.1, BA.2 and BA.3. Nature Communications, 13 (1) 6387, 1-6. doi: 10.1038/s41467-022-34180-1

Transcriptomic profiling of cardiac tissues from SARS‐CoV ‐2 patients identifies DNA damage

Kulasinghe, Arutha, Liu, Ning, Tan, Chin Wee, Monkman, James, Sinclair, Jane E., Bhuva, Dharmesh D., Godbolt, David, Pan, Liuliu, Nam, Andy, Sadeghirad, Habib, Sato, Kei, Bassi, Gianluigi Li, O'Byrne, Ken, Hartmann, Camila, Miggiolaro, Anna Flavia Ribeiro dos Santos, Marques, Gustavo Lenci, Moura, Lidia Zytynski, Richard, Derek, Adams, Mark, Noronha, Lucia de, Baena, Cristina Pellegrino, Suen, Jacky Y., Arora, Rakesh, Belz, Gabrielle T., Short, Kirsty R., Davis, Melissa J., Souza‐Fonseca Guimaraes, Fernando and Fraser, John F. (2022). Transcriptomic profiling of cardiac tissues from SARS‐CoV ‐2 patients identifies DNA damage. Immunology, 168 (3), 403-419. doi: 10.1111/imm.13577

Developing an antiviral surface cleaner utilising unique surface adsorption properties of hydroxyproline-rich-proteins

Shewan, Heather M. , Siauw, Meiliana , Vinden, Naomi , Dong, Anran , Beheshti, Amir , Chew, Keng Yih, Stokes, Jason R. , Short, Kirsty R., Mikkelsen, Deirdre, Koehler, Berthold and Reihmann, Matthias (2022). Developing an antiviral surface cleaner utilising unique surface adsorption properties of hydroxyproline-rich-proteins. Household and Personal Care Today, 17 (5), 57-61.

A Bayesian network analysis quantifying risks versus benefits of the Pfizer COVID-19 vaccine in Australia

Sinclair, Jane E., Mayfield, Helen J., Short, Kirsty R., Brown, Samuel J., Puranik, Rajesh, Mengersen, Kerrie, Litt, John C. B. and Lau, Colleen L. (2022). A Bayesian network analysis quantifying risks versus benefits of the Pfizer COVID-19 vaccine in Australia. npj Vaccines, 7 (1) 93, 1-11. doi: 10.1038/s41541-022-00517-6

Ancestral SARS-CoV-2, but not Omicron, replicates less efficiently in primary pediatric nasal epithelial cells

Zhu, Yanshan, Chew, Keng Yih, Wu, Melanie, Karawita, Anjana C., McCallum, Georgina, Steele, Lauren E., Yamamoto, Ayaho, Labzin, Larisa I., Yarlagadda, Tejasri, Khromykh, Alexander A., Wang, Xiaohui, Sng, Julian D. J., Stocks, Claudia J., Xia, Yao, Kollmann, Tobias R., Martino, David, Joensuu, Merja, Meunier, Frédéric A., Balistreri, Giuseppe, Bielefeldt-Ohmann, Helle, Bowen, Asha C., Kicic, Anthony, Sly, Peter D., Spann, Kirsten M. and Short, Kirsty R. (2022). Ancestral SARS-CoV-2, but not Omicron, replicates less efficiently in primary pediatric nasal epithelial cells. PLoS Biology, 20 (8) e3001728, 1-19. doi: 10.1371/journal.pbio.3001728

Indigenous peoples and pandemics

Alves, Daniele E., Mamelund, Svenn-Erik, Dimka, Jessica, Simonsen, Lone, Mølbak, Mathias, Ørskov, Søren, Sattenspiel, Lisa, Tripp, Lianne, Noymer, Andrew, Chowell-Puente, Gerardo, Dahal, Sushma, Van Doren, Taylor P., Wissler, Amanda, Heffernan, Courtney, Renfree Short, Kirsty, Battles, Heather and Baker, Michael G. (2022). Indigenous peoples and pandemics. Scandinavian Journal of Public Health, 50 (6), 662-667. doi: 10.1177/14034948221087095

Respiratory tract infections in diabetes – lessons from tuberculosis and influenza to guide understanding of COVID-19 severity

Al-Sayyar, Amnah, Hulme, Katina D., Thibaut, Ronan, Bayry, Jagadeesh, Sheedy, Frederick J., Short, Kirsty R. and Alzaid, Fawaz (2022). Respiratory tract infections in diabetes – lessons from tuberculosis and influenza to guide understanding of COVID-19 severity. Frontiers in Endocrinology, 13 919223, 1-17. doi: 10.3389/fendo.2022.919223

Designing an evidence-based Bayesian network for estimating the risk versus benefits of AstraZeneca COVID-19 vaccine

Mayfield, Helen J., Lau, Colleen L., Sinclair, Jane E., Brown, Samuel J., Baird, Andrew, Litt, John, Vuorinen, Aapeli, Short, Kirsty R., Waller, Michael and Mengersen, Kerrie (2022). Designing an evidence-based Bayesian network for estimating the risk versus benefits of AstraZeneca COVID-19 vaccine. Vaccine, 40 (22), 3072-3084. doi: 10.1016/j.vaccine.2022.04.004

Limited recognition of highly conserved regions of SARS-CoV-2

Swaminathan, Srividhya, Lineburg, Katie E., Ambalathingal, George R., Crooks, Pauline, Grant, Emma J., Mohan, Sonali V., Raju, Jyothy, Panikkar, Archana, Le Texier, Laetitia, Tong, Zheng Wei Marcus, Chew, Keng Yih, Neller, Michelle A., Short, Kirsty R., Gowda, Harsha, Gras, Stephanie, Khanna, Rajiv and Smith, Corey (2022). Limited recognition of highly conserved regions of SARS-CoV-2. Microbiology Spectrum, 10 (1) e02780-21. doi: 10.1128/spectrum.02780-21

SARS-CoV-2-specific T cells generated for adoptive immunotherapy are capable of recognizing multiple SARS-CoV-2 variants

Panikkar, Archana, Lineburg, Katie E., Raju, Jyothy, Chew, Keng Yih, Ambalathingal, George R., Rehan, Sweera, Swaminathan, Srividhya, Crooks, Pauline, Le Texier, Laetitia, Beagley, Leone, Best, Shannon, Solomon, Matthew, Matthews, Katherine K., Srihari, Sriganesh, Neller, Michelle A., Short, Kirsty R., Khanna, Rajiv and Smith, Corey (2022). SARS-CoV-2-specific T cells generated for adoptive immunotherapy are capable of recognizing multiple SARS-CoV-2 variants. PLoS Pathogens, 18 (2) e1010339, 1-18. doi: 10.1371/journal.ppat.1010339

Author Correction: Development of molecular clamp stabilized hemagglutinin vaccines for Influenza A viruses

McMillan, Christopher L. D., Cheung, Stacey T. M., Modhiran, Naphak, Barnes, James, Amarilla, Alberto A., Bielefeldt-Ohmann, Helle, Lee, Leo Yi Yang, Guilfoyle, Kate, van Amerongen, Geert, Stittelaar, Koert, Jakob, Virginie, Lebas, Celia, Reading, Patrick, Short, Kirsty R., Young, Paul R., Watterson, Daniel and Chappell, Keith J. (2022). Author Correction: Development of molecular clamp stabilized hemagglutinin vaccines for Influenza A viruses. npj Vaccines, 7 (1) 3, 3. doi: 10.1038/s41541-021-00428-y

Environmental impacts on COVID-19: mechanisms of increased susceptibility

Cormier, Stephania A., Yamamoto, Ayaho, Short, Kirsty R., Vu, Luan and Suk, William A. (2022). Environmental impacts on COVID-19: mechanisms of increased susceptibility. Annals of Global Health, 88 (1) 94, 1-7. doi: 10.5334/aogh.3907

Profiling of lung SARS-CoV-2 and influenza virus infection dissects virus-specific host responses and gene signatures

Kulasinghe, Arutha, Tan, Chin Wee, dos Santos Miggiolaro, Anna Flavia Ribeiro, Monkman, James, SadeghiRad, Habib, Bhuva, Dharmesh D., da Silva Motta Junior, Jarbas, Vaz de Paula, Caroline Busatta, Nagashima, Seigo, Baena, Cristina Pellegrino, Souza-Fonseca-Guimaraes, Paulo, de Noronha, Lucia, McCulloch, Timothy, Rodrigues Rossi, Gustavo, Cooper, Caroline, Tang, Benjamin, Short, Kirsty R., Davis, Melissa J., Souza-Fonseca-Guimaraes, Fernando, Belz, Gabrielle T. and O'Byrne, Ken (2022). Profiling of lung SARS-CoV-2 and influenza virus infection dissects virus-specific host responses and gene signatures. European Respiratory Journal, 59 (6) 2101881, 1-19. doi: 10.1183/13993003.01881-2021

Development of molecular clamp stabilized hemagglutinin vaccines for Influenza A viruses

McMillan, Christopher L. D., Cheung, Stacey T. M., Modhiran, Naphak, Barnes, James, Amarilla, Alberto A., Bielefeldt-Ohmann, Helle, Lee, Leo Yi Yang, Guilfoyle, Kate, van Amerongen, Geert, Stittelaar, Koert, Jakob, Virginie, Lebas, Celia, Reading, Patrick, Short, Kirsty R., Young, Paul R., Watterson, Daniel and Chappell, Keith J. (2021). Development of molecular clamp stabilized hemagglutinin vaccines for Influenza A viruses. npj Vaccines, 6 (1) 135, 135. doi: 10.1038/s41541-021-00395-4

Risk-benefit analysis of the AstraZeneca COVID-19 vaccine in Australia using a Bayesian network modelling framework

Lau, Colleen L, Mayfield, Helen J, Sinclair, Jane E, Brown, Samuel J, Waller, Michael, Enjeti, Anoop K, Baird, Andrew, Short, Kirsty, Mengersen, Kerrie and Litt, John (2021). Risk-benefit analysis of the AstraZeneca COVID-19 vaccine in Australia using a Bayesian network modelling framework. Vaccine, 39 (51), 7429-7440. doi: 10.1016/j.vaccine.2021.10.079

Dysregulated inflammation during obesity: driving disease severity in influenza virus and SARS-CoV-2 infections

Hulme, Katina D., Noye, Ellesandra C., Short, Kirsty R. and Labzin, Larisa I. (2021). Dysregulated inflammation during obesity: driving disease severity in influenza virus and SARS-CoV-2 infections. Frontiers in Immunology, 12 770066, 770066. doi: 10.3389/fimmu.2021.770066

Endothelial cells are not productively infected by SARS‐CoV‐2

Schimmel, Lilian, Chew, Keng Yih, Stocks, Claudia J., Yordanov, Teodor E., Essebier, Patricia, Kulasinghe, Arutha, Monkman, James, Santos Miggiolaro, Anna Flavia Ribeiro, Cooper, Caroline, Noronha, Lucia, Schroder, Kate, Lagendijk, Anne Karine, Labzin, Larisa I., Short, Kirsty R. and Gordon, Emma J. (2021). Endothelial cells are not productively infected by SARS‐CoV‐2. Clinical and Translational Immunology, 10 (10) e1350, e1350. doi: 10.1002/cti2.1350

Flower lose, a cell fitness marker, predicts COVID‐19 prognosis

Yekelchyk, Michail, Madan, Esha, Wilhelm, Jochen, Short, Kirsty R, Palma, António M, Liao, Linbu, Camacho, Denise, Nkadori, Everlyne, Winters, Michael T, Rice, Emily S, Rolim, Inês, Cruz‐Duarte, Raquel, Pelham, Christopher J, Nagane, Masaki, Gupta, Kartik, Chaudhary, Sahil, Braun, Thomas, Pillappa, Raghavendra, Parker, Mark S, Menter, Thomas, Matter, Matthias, Haslbauer, Jasmin Dionne, Tolnay, Markus, Galior, Kornelia D, Matkwoskyj, Kristina A, McGregor, Stephanie M, Muller, Laura K, Rakha, Emad A, Lopez‐Beltran, Antonio ... Gogna, Rajan (2021). Flower lose, a cell fitness marker, predicts COVID‐19 prognosis. EMBO Molecular Medicine, 13 (11) e13714, e13714. doi: 10.15252/emmm.202013714

Low-dose IL-2 therapy invigorates CD8+ T cells for viral control in systemic lupus erythematosus with a potential risk of deteriorating immunopathology

Zhou, Pengcheng, Chen, Jiali, He, Jing, Zheng, Ting, Yunis, Joseph, Makota, Victor, Alexandre, Yannick O., Gong, Fang, Zhang, Xia, Xie, Wuxiang, Li, Yuhui, Shao, Miao, Zhu, Yanshan, Sinclair, Jane E., Miao, Miao, Chen, Yaping, Short, Kirsty R., Mueller, Scott N., Sun, Xiaolin, Yu, Di and Li, Zhanguo (2021). Low-dose IL-2 therapy invigorates CD8+ T cells for viral control in systemic lupus erythematosus with a potential risk of deteriorating immunopathology. PLoS Pathogens, 17 (10) e1009858, e1009858. doi: 10.1371/journal.ppat.1009858

Modulation of vagal sensory neurons via high mobility group box-1 and receptor for advanced glycation end products: implications for respiratory viral infections

Mazzone, Stuart B., Yang, Seung-Kwon, Keller, Jennifer A., Simanauskaite, Juste, Arikkatt, Jaisy, Fogarty, Matthew J., Moe, Aung Aung Kywe, Chen, Chen, Trewella, Matthew W., Tian, Luyi, Ritchie, Matthew E., Chua, Brendan Y., Phipps, Simon, Short, Kirsty R. and McGovern, Alice E. (2021). Modulation of vagal sensory neurons via high mobility group box-1 and receptor for advanced glycation end products: implications for respiratory viral infections. Frontiers in Physiology, 12 744812, 744812. doi: 10.3389/fphys.2021.744812

Type I diabetes mellitus increases the cardiovascular complications of influenza virus infection

Sinclair, Jane E., Bloxham, Conor J., Chiu, Han, Chew, Keng Yih, Russell, Jake, Yoshikawa, Yusuke, Bielefeldt-Ohmann, Helle, Steele, Lauren E., Hulme, Katina D., Verzele, Nathalie A. J., Noye, Ellesandra C., Wu, Melanie, Reichelt, Melissa E., Thomas, Walter G., Gallo, Linda A., Redd, Meredith A. and Short, Kirsty R. (2021). Type I diabetes mellitus increases the cardiovascular complications of influenza virus infection. Frontiers in Cellular and Infection Microbiology, 11 714440, 714440. doi: 10.3389/fcimb.2021.714440

Cardiovascular disease in SARS‐CoV‐2 infection

Sato, Kei, Sinclair, Jane E., Sadeghirad, Habib, Fraser, John F., Short, Kirsty R. and Kulasinghe, Arutha (2021). Cardiovascular disease in SARS‐CoV‐2 infection. Clinical and Translational Immunology, 10 (9) e1343, e1343. doi: 10.1002/cti2.1343

Postnatal inflammation in ApoE−/− mice is associated with immune training and atherosclerosis

Noye, Ellesandra C., Bekkering, Siroon, Limawan, Albert P., Nguyen, Maria U., Widiasmoko, Lisa K., Lu, Hui, Pepe, Salvatore, Cheung, Michael M., Menheniott, Trevelyan R., Wallace, Megan J., Moss, Timothy J., Burgner, David P. and Short, Kirsty R. (2021). Postnatal inflammation in ApoE−/− mice is associated with immune training and atherosclerosis. Clinical Science, 135 (15), 1859-1871. doi: 10.1042/cs20210496

The role of T‐cell immunity in COVID‐19 severity amongst people living with type II diabetes

Tong, Zhen Wei Marcus, Grant, Emma, Gras, Stephanie, Wu, Melanie, Smith, Corey, Barrett, Helen L., Gallo, Linda A. and Short, Kirsty R. (2021). The role of T‐cell immunity in COVID‐19 severity amongst people living with type II diabetes. The FEBS Journal, 288 (17), 5042-5054. doi: 10.1111/febs.16105

Pre-Diabetes Increases Tuberculosis Disease Severity, While High Body Fat Without Impaired Glucose Tolerance Is Protective

Sinha, Roma, Ngo, Minh Dao, Bartlett, Stacey, Bielefeldt-Ohmann, Helle, Keshvari, Sahar, Hasnain, Sumaira Z., Donovan, Meg L., Kling, Jessica C., Blumenthal, Antje, Chen, Chen, Short, Kirsty R. and Ronacher, Katharina (2021). Pre-Diabetes Increases Tuberculosis Disease Severity, While High Body Fat Without Impaired Glucose Tolerance Is Protective. Frontiers in Cellular and Infection Microbiology, 11 691823, 691823. doi: 10.3389/fcimb.2021.691823

Limited evidence for the role of environmental factors in the unusual peak of influenza in Brisbane during the 2018-2019 Australian summer

Lu, Jianyun, Yang, Zhicong, Karawita, Anjana C., Bunte, Myrna, Chew, Keng Yih, Pegg, Cassandra, Mackay, Ian, Whiley, David and Short, Kirsty R. (2021). Limited evidence for the role of environmental factors in the unusual peak of influenza in Brisbane during the 2018-2019 Australian summer. The Science of the Total Environment, 776 145967, 145967. doi: 10.1016/j.scitotenv.2021.145967

A meta-analysis on the role of children in SARS-CoV-2 in household transmission clusters

Zhu, Yanshan, Bloxham, Conor J., Hulme, Katina D., Sinclair, Jane E., Tong, Zhen Wei Marcus, Steele, Lauren E., Noye, Ellesandra C., Lu, Jiahai, Xia, Yao, Chew, Keng Yih, Pickering, Janessa, Gilks, Charles, Bowen, Asha C. and Short, Kirsty R. (2021). A meta-analysis on the role of children in SARS-CoV-2 in household transmission clusters. Clinical Infectious Diseases, 72 (12) ciaa1825, e1146-e1153. doi: 10.1093/cid/ciaa1825

Primary chicken and duck endothelial cells display a differential response to infection with highly pathogenic avian influenza virus​​​​​​​

Tong, Zhen Wei Marcus, Karawita, Anjana C., Kern, Colin, Zhou, Huaijun, Sinclair, Jane E., Yan, Limin, Chew, Keng Yih, Lowther, Sue, Trinidad, Lee, Challagulla, Arjun, Schat, Karel A., Baker, Michelle L. and Short, Kirsty R. (2021). Primary chicken and duck endothelial cells display a differential response to infection with highly pathogenic avian influenza virus​​​​​​​. Genes, 12 (6) 901, 901. doi: 10.3390/genes12060901

CD8+ T cells specific for an immunodominant SARS-CoV-2 nucleocapsid epitope cross-react with selective seasonal coronaviruses

Lineburg, Katie E., Grant, Emma J., Swaminathan, Srividhya, Chatzileontiadou, Demetra S.M., Szeto, Christopher, Sloane, Hannah, Panikkar, Archana, Raju, Jyothy, Crooks, Pauline, Rehan, Sweera, Nguyen, Andrea T., Lekieffre, Lea, Neller, Michelle A., Tong, Zhen Wei Marcus, Jayasinghe, Dhilshan, Chew, Keng Yih, Lobos, Christian A., Halim, Hanim, Burrows, Jacqueline M., Riboldi-Tunnicliffe, Alan, Chen, Weisan, D'Orsogna, Lloyd, Khanna, Rajiv, Short, Kirsty R., Smith, Corey and Gras, Stephanie (2021). CD8+ T cells specific for an immunodominant SARS-CoV-2 nucleocapsid epitope cross-react with selective seasonal coronaviruses. Immunity, 54 (5), 1055-1065. doi: 10.1016/j.immuni.2021.04.006

Humidity-dependent survival of an airborne influenza a virus: practical implications for controlling airborne viruses

Niazi, Sadegh, Short, Kirsty R., Groth, Robert, Cravigan, Luke, Spann, Kirsten, Ristovski, Zoran and Johnson, Graham R. (2021). Humidity-dependent survival of an airborne influenza a virus: practical implications for controlling airborne viruses. Environmental Science and Technology Letters, 8 (5), 412-418. doi: 10.1021/acs.estlett.1c00253

A meta-analysis on the role of pre-existing chronic disease in the cardiac complications of SARS-CoV-2 infection

Sinclair, Jane E., Zhu, Yanshan, Xu, Gang, Ma, Wei, Shi, Haiyan, Ma, Kun-Long, Cao, Chun-Feng, Kong, Ling-Xi, Wan, Ke-Qiang, Liao, Juan, Wang, Hai-Qiang, Arentz, Matt, Redd, Meredith A., Gallo, Linda A. and Short, Kirsty R. (2021). A meta-analysis on the role of pre-existing chronic disease in the cardiac complications of SARS-CoV-2 infection. iScience, 24 (4) 102264, 102264. doi: 10.1016/j.isci.2021.102264

Diabetes and overweight/obesity are independent, nonadditive risk factors for in-hospital severity of COVID-19: an international, multicenter retrospective meta-analysis

Longmore, Danielle K., Miller, Jessica E., Bekkering, Siroon, Saner, Christoph, Mifsud, Edin, Zhu, Yanshan, Saffery, Richard, Nichol, Alistair, Colditz, Graham, Short, Kirsty R. and Burgner, David P. (2021). Diabetes and overweight/obesity are independent, nonadditive risk factors for in-hospital severity of COVID-19: an international, multicenter retrospective meta-analysis. Diabetes Care, 44 (6), dc202676-1290. doi: 10.2337/dc20-2676

The impact of influenza pulmonary infection and inflammation on vagal bronchopulmonary sensory neurons

Verzele, Nathalie A. J., Chua, Brendon Y., Law, Charity W., Zhang, Albert, Ritchie, Matthew E., Wightman, Oliver, Edwards, Isaac N., Hulme, Katina D., Bloxham, Conor J., Bielefeldt-Ohmann, Helle, Trewella, Matthew W., Moe, Aung Aung Kywe, Chew, Keng Yih, Mazzone, Stuart B., Short, Kirsty R. and McGovern, Alice E. (2021). The impact of influenza pulmonary infection and inflammation on vagal bronchopulmonary sensory neurons. The FASEB Journal, 35 (3) e21320, e21320. doi: 10.1096/fj.202001509r

A paucigranulocytic asthma host environment promotes the emergence of virulent influenza viral variants

Hulme, Katina D., Karawita, Anjana C., Pegg, Cassandra, Bunte, Myrna J. M., Bielefeldt-Ohmann, Helle, Bloxham, Conor J., Van den Hoecke, Silvie, Setoh, Yin Xiang, Vrancken, Bram, Spronken, Monique, Steele, Lauren E., Verzele, Nathalie A. J., Upton, Kyle R., Khromykh, Alexander A., Chew, Keng Yih, Sukkar, Maria, Phipps, Simon and Short, Kirsty R. (2021). A paucigranulocytic asthma host environment promotes the emergence of virulent influenza viral variants. eLife, 10 e61803, 1-21. doi: 10.7554/elife.61803

Influenza in high-risk hosts—lessons learned from animal models

Honce, Rebekah, Wohlgemuth, Nicholas, Meliopoulos, Victoria A., Short, Kirsty R. and Schultz-Cherry, Stacey (2020). Influenza in high-risk hosts—lessons learned from animal models. Cold Spring Harbor Perspectives in Medicine, 10 (12) a038604, 1-22. doi: 10.1101/cshperspect.a038604

A high fat diet increases influenza A virus-associated cardiovascular damage

Siegers, Jurre Y., Novakovic, Boris, Hulme, Katina D., Marshall, Rebecca, Bloxham, Conor J., Thomas, Walter G., Reichelt, Mellissa E., Leijten, Lonneke, van Run, Peter, Knox, Karen, Sokolowski, Kamil A., Tse, Brian W. C., Chew, Keng Yih, Christ, Angelika N., Howe, Greg, Bruxner, Timothy J. C., Karolyi, Mario, Pawelka, Erich, Koch, Rebecca M., Bellmann-Weiler, Rosa, Burkert, Francesco, Weiss, Günter, Samanta, Romit J., Openshaw, Peter J. M., Bielefeldt-Ohmann, Helle, van Riel, Debby and Short, Kirsty R. (2020). A high fat diet increases influenza A virus-associated cardiovascular damage. The Journal of infectious diseases, 222 (5), 820-831. doi: 10.1093/infdis/jiaa159

Animal and translational models of SARS-CoV-2 infection and COVID-19

Johansen, M. D., Irving, A., Montagutelli, X., Tate, M. D., Rudloff, , Nold, M. F., Hansbro, N. G., Kim, R. Y., Donovan, C., Liu, G., Faiz, A., Short, K. R., Lyons, J. G., McCaughan, G. W., Gorrell, M. D., Cole, A., Moreno, C., Couteur, D., Hesselson, D., Triccas, J., Neely, G. G., Gamble, J. R., Simpson, S. J., Saunders, B. M., Oliver, B. G., Britton, W. J., Wark, P. A., Nold-Petry, C. A. and Hansbro, P. M. (2020). Animal and translational models of SARS-CoV-2 infection and COVID-19. Mucosal Immunology, 13 (6), 877-891. doi: 10.1038/s41385-020-00340-z

High glucose levels increase influenza-associated damage to the pulmonary epithelial-endothelial barrier

Hulme, Katina Dee, Yan, Limin, Marshall, Rebecca J., Bloxham, Conor J., Upton, Kyle R., Hasnain, Sumaira Z., Bielefeldt-Ohmann, Helle, Loh, Zhixuan, Ronacher, Katharina, Chew, Keng Yih , Gallo, Linda A. and Short, Kirsty Renfree (2020). High glucose levels increase influenza-associated damage to the pulmonary epithelial-endothelial barrier. eLife, 9 e56907, 1-20. doi: 10.7554/elife.56907

Glycemic variability in diabetes increases the severity of influenza

Marshall, Rebecca J., Armart, Pornthida, Hulme, Katina D., Chew, Keng Yih, Brown, Alexandra C., Hansbro, Philip M., Bloxham, Conor J., Flint, Melanie, Ronacher, Katharina, Bielefeldt-Ohmann, Helle, Gallo, Linda A. and Short, Kirsty R. (2020). Glycemic variability in diabetes increases the severity of influenza. mBio, 11 (2) e02841-19. doi: 10.1128/mbio.02841-19

Role of endothelial cells in the pathogenesis of influenza in humans

Short, Kirsty R., Kuiken, Thijs and Van Riel, Debby (2019). Role of endothelial cells in the pathogenesis of influenza in humans. The Journal of Infectious Diseases, 220 (11), 1859-1860. doi: 10.1093/infdis/jiz349

A delicate balancing act: immunity and immunopathology in human H7N9 influenza virus infections

Karawita, Anjana C., Tong, Marcus Z. W. and Short, Kirsty R. (2019). A delicate balancing act: immunity and immunopathology in human H7N9 influenza virus infections. Current Opinion in Infectious Diseases, 32 (3), 191-195. doi: 10.1097/QCO.0000000000000538

One health insights to prevent the next HxNy viral outbreak: learning from the epidemiology of H7N9

Zheng, Zhe, Lu, Yi, Short, Kirsty R. and Lu, Jiahai (2019). One health insights to prevent the next HxNy viral outbreak: learning from the epidemiology of H7N9. BMC Infectious Diseases, 19 (1) 138, 138. doi: 10.1186/s12879-019-3752-6

Translational review: Neuroimmune mechanisms in cough and emerging therapeutic targets

McGovern, Alice E., Short, Kirsty R., Kywe Moe, Aung Aung and Mazzone, Stuart B. (2018). Translational review: Neuroimmune mechanisms in cough and emerging therapeutic targets. Journal of Allergy and Clinical Immunology, 142 (5), 1392-1402. doi: 10.1016/j.jaci.2018.09.004

The culture of primary duck endothelial cells for the study of avian influenza

Davis, Raissa L., Choi, Geunho, Kuiken, Thijs, Quéré, Pascale, Trapp, Sascha, Short, Kirsty R. and Richard, Mathilde (2018). The culture of primary duck endothelial cells for the study of avian influenza. BMC Microbiology, 18 (1) 138, 138. doi: 10.1186/s12866-018-1307-4

Creating disease resistant chickens: a viable solution to avian influenza?

Looi, Fong Yang, Baker, Michelle L., Townson, Thomas, Richard, Mathilde, Novak, Ben, Doran, Tim J. and Short, Kirsty R. (2018). Creating disease resistant chickens: a viable solution to avian influenza?. Viruses, 10 (10) 561, 561. doi: 10.3390/v10100561

Back to the future: lessons learned from the 1918 influenza pandemic

Short, Kirsty R., Kedzierska, Katherine and van de Sandt, Carolien E. (2018). Back to the future: lessons learned from the 1918 influenza pandemic. Frontiers in Cellular and Infection Microbiology, 8 343, 343. doi: 10.3389/fcimb.2018.00343

Productive replication of avian influenza viruses in chicken endothelial cells is determined by hemagglutinin cleavability and is related to innate immune escape

Lion, Adrien, Richard, Mathilde, Esnault, Evelyne, Kut, Emmanuel, Soubieux, Denis, Guillory, Vanaïque, Germond, Mélody, Blondeau, Caroline, Guabiraba, Rodrigo, Short, Kirsty R., Marc, Daniel, Quéré, Pascale and Trapp, Sascha (2017). Productive replication of avian influenza viruses in chicken endothelial cells is determined by hemagglutinin cleavability and is related to innate immune escape. Virology, 513, 29-42. doi: 10.1016/j.virol.2017.10.007

Proinflammatory Cytokine Responses in Extra-Respiratory Tissues During Severe Influenza

Short, Kirsty R., Veeris, Rebecca, Leijten, Lonneke M., van den Brand, Judith M., Jong, Victor L., Stittelaar, Koert, Osterhaus, Ab D. M. E., Andeweg, Arno and van Riel, Debby (2017). Proinflammatory Cytokine Responses in Extra-Respiratory Tissues During Severe Influenza. The Journal of Infectious Diseases, 216 (7), 829-833. doi: 10.1093/infdis/jix281

Influenza virus and glycemic variability in diabetes: a killer combination?

Hulme, Katina D., Gallo, Linda A. and Short, Kirsty R. (2017). Influenza virus and glycemic variability in diabetes: a killer combination?. Frontiers in Microbiology, 8 (MAY) 861, 861. doi: 10.3389/fmicb.2017.00861

RAGE deficiency predisposes mice to virus-induced paucigranulocytic asthma

Arikkatt, Jaisy, Ullah, Md Ashik, Short, Kirsty Renfree, Zhang, Vivian, Gan, Wan Jun, Loh, Zhixuan, Werder, Rhiannon B., Simpson, Jennifer, Sly, Peter D., Mazzone, Stuart B., Spann, Kirsten M., Ferreira, Manuel A R., Upham, John W., Sukkar, Maria B. and Phipps, Simon (2017). RAGE deficiency predisposes mice to virus-induced paucigranulocytic asthma. eLife, 6 e21199. doi: 10.7554/eLife.21199

Human CD8(+) T Cells Damage Noninfected Epithelial Cells during Influenza Virus Infection In Vitro

Van De Sandt, Carolien E., Barcena, Montserrat, Koster, Abraham J., Kasper, Jennifer, Kirkpatrick, Charles J., Scott, Dana P., De Vries, Rory D., Herold, Susanne, Rimmelzwaan, Guus F., Kuiken, Thijs and Short, Kirsty R. (2016). Human CD8(+) T Cells Damage Noninfected Epithelial Cells during Influenza Virus Infection In Vitro. American Journal of Respiratory Cell and Molecular Biology, 57 (5), 536-546. doi: 10.1165/rcmb.2016-0377OC

Neutralising inhibitors in the airways of naïve ferrets do not play a major role in modulating the virulence of H3 subtype influenza A viruses

Job, Emma R., Pizzolla, Angela, Nebl, Thomas, Short, Kirsty R., Deng, Yi-Mo, Carolan, Louise, Laurie, Karen L., Brooks, Andrew G. and Reading, Patrick C. (2016). Neutralising inhibitors in the airways of naïve ferrets do not play a major role in modulating the virulence of H3 subtype influenza A viruses. Virology, 494, 143-157. doi: 10.1016/j.virol.2016.01.024

Influenza virus damages the alveolar barrier by disrupting epithelial cell tight junctions

Short, Kirsty R., Kasper, Jennifer, van der Aa, Stijn, Andeweg, Arno C., Zaaraoui-Boutahar, Fatiha, Goeijenbier, Marco, Richard, Mathilde, Herold, Susanne, Becker, Christin, Scott, Dana P., Limpens, Ronald W. A. L., Koster, Abraham J., Bárcena, Montserrat, Fouchier, Ron A. M., Kirkpatrick, Charles James and Kuiken, Thijs (2016). Influenza virus damages the alveolar barrier by disrupting epithelial cell tight junctions. European Respiratory Journal, 47 (3), 954-966. doi: 10.1183/13993003.01282-2015

Reducing the impact of influenza-associated secondary pneumococcal infections

Mifsud, Edin J., Tan, Amabel C., Short, Kirsty R., Brown, Lorena E., Chua, Brendon Y. and Jackson, David C. (2016). Reducing the impact of influenza-associated secondary pneumococcal infections. Immunology and Cell Biology, 94 (1), 101-108. doi: 10.1038/icb.2015.71

One health, multiple challenges: the inter-species transmission of influenza A virus

Short, Kirsty R., Richard, Mathilde, Verhagen, Josanne H., van Riel, Debby, Schrauwen, Eefje J. A., van den Brand, Judith M. A., Manz, Benjamin, Bodewes, Rogier and Herfst, Sander (2015). One health, multiple challenges: the inter-species transmission of influenza A virus. One Health, 1, 1-13. doi: 10.1016/j.onehlt.2015.03.001

Optimisations and Challenges Involved in the Creation of Various Bioluminescent and Fluorescent Influenza A Virus Strains for In Vitro and In Vivo Applications

Spronken, Monique I., Short, Kirsty R., Herfst, Sander, Bestebroer, Theo M., Vaes, Vincent P., van der Hoeven, Barbara, Koster, Abraham J., Kremers, Gert-Jan, Scott, Dana P., Gultyaev, Alexander P., Sorell, Erin M., de Graaf, Miranda, Barcena, Montserrat, Rimmelzwaan, Guus F. and Fouchier, Ron A. (2015). Optimisations and Challenges Involved in the Creation of Various Bioluminescent and Fluorescent Influenza A Virus Strains for In Vitro and In Vivo Applications. PLoS One, 10 (8) e0133888, e0133888-e0133888. doi: 10.1371/journal.pone.0133888

A single dose biodegradable vaccine depot that induces persistently high levels of antibody over a year

Chua, Brendon Y., Sekiya, Toshiki, Al Kobaisi, Mohammad, Short, Kirsty R., Mainwaring, David E. and Jackson, David C. (2015). A single dose biodegradable vaccine depot that induces persistently high levels of antibody over a year. Biomaterials, 53, 50-57. doi: 10.1016/j.biomaterials.2015.02.066

Infection of mouse macrophages by seasonal influenza viruses can be restricted at the level of virus entry and at a late stage in the virus life cycle

Londrigan, Sarah L., Short, Kirsty R., Ma, Joel, Gillespie, Leah, Rockman, Steven P., Brooks, Andrew G. and Reading, Patrick C. (2015). Infection of mouse macrophages by seasonal influenza viruses can be restricted at the level of virus entry and at a late stage in the virus life cycle. Journal of Virology, 89 (24), 12319-12329. doi: 10.1128/JVI.01455-15

Influenza virus and endothelial cells: a species specific relationship

Short, Kirsty R., Kroeze, Edwin J. B. Veldhuis, Reperant, Leslie A., Richard, Mathilde and Kuiken, Thijs (2014). Influenza virus and endothelial cells: a species specific relationship. Frontiers in Microbiology, 5 (DEC) 653, 653.1-653.11. doi: 10.3389/fmicb.2014.00653

Bacterial lipopolysaccharide inhibits influenza virus infection of human macrophages and the consequent induction of cd8+ t cell immunity

Short, Kirsty R., Vissers, Marloes, De Kleijn, Stan, Zomer, Aldert L., Kedzierska, Katherine, Grant, Emma, Reading, Patrick C., Hermans, Peter W. M., Ferwerda, Gerben and Diavatopoulos, Dimitri A. (2014). Bacterial lipopolysaccharide inhibits influenza virus infection of human macrophages and the consequent induction of cd8+ t cell immunity. Journal of Innate Immunity, 6 (2), 129-139. doi: 10.1159/000353905

Novel avian-origin influenza A (H7N9) virus attachment to the respiratory tract of five animal models

Siegers, Jurre Y., Short, Kirsty R., Leijten, Lonneke M. E., de Graaf, Miranda, Spronken, Monique I. J., Schrauwen, Eefje J. A., Marshall, Nicolle, Lowen, Anice C., Gabriel, Gülsah, Osterhaus, Albert D. M. E., Kuiken, Thijs and van Riel, Debby (2014). Novel avian-origin influenza A (H7N9) virus attachment to the respiratory tract of five animal models. Journal of Virology, 88 (8), 4595-4599. doi: 10.1128/JVI.03190-13

A single amino acid substitution in the hemagglutinin of H3N2 subtype influenza A viruses is associated with resistance to the long pentraxin PTX3 and enhanced virulence in mice

Job, Emma R., Bottazzi, Barbara, Short, Kirsty R., Deng, Yi-Mo, Mantovani, Alberto, Brooks, Andrew G. and Reading, Patrick C. (2014). A single amino acid substitution in the hemagglutinin of H3N2 subtype influenza A viruses is associated with resistance to the long pentraxin PTX3 and enhanced virulence in mice. The Journal of Immunology, 192 (1), 271-281. doi: 10.4049/jimmunol.1301814

Antibodies mediate formation of neutrophil extracellular traps in the middle ear and facilitate secondary pneumococcal otitis media

Short, Kirsty R., von Köckritz-Blickwede, Maren, Langereis, Jeroen D., Chew, Keng Yih, Job, Emma R., Armitage, Charles W., Hatcher, Brandon, Fujihashi, Kohtaro, Reading, Patrick C., Hermans, Peter W., Wijburg, Odilia L. and Diavatopoulos, Dimitri A. (2014). Antibodies mediate formation of neutrophil extracellular traps in the middle ear and facilitate secondary pneumococcal otitis media. Infection and Immunity, 82 (1), 364-370. doi: 10.1128/IAI.01104-13

Pathogenesis of influenza-induced acute respiratory distress syndrome

Short, Kirsty R., Kroeze, Edwin J. B. Veldhuis, Fouchier, Ron A. M. and Kuiken, Thijs (2014). Pathogenesis of influenza-induced acute respiratory distress syndrome. Lancet Infectious Diseases, 14 (1), 57-69. doi: 10.1016/S1473-3099(13)70286-X

A novel method linking antigen presentation by human monocyte-derived macrophages to CD8(+) T cell polyfunctionality

Short, Kirsty R., Grant, Emma J., Vissers, Marloes, Reading, Patrick C., Diavatopoulos, Dimitri A. and Kedzierska, Katherine (2013). A novel method linking antigen presentation by human monocyte-derived macrophages to CD8(+) T cell polyfunctionality. Frontiers in Immunology, 4 (389) Article 389, 1-7. doi: 10.3389/fimmu.2013.00389

Novel avian-origin influenza A (H7N9) virus attaches to epithelium in both upper and lower respiratory tract of humans

van Riel, Debby, Leijten, Lonneke M. E., de Graaf, Miranda, Siegers, Jurre Y., Short, Kirsty R., Spronken, Monique I. J., Schrauwen, Eefje J. A., Fouchier, Ron A. M., Osterhaus, Albert D. M. E. and Kuiken, Thijs (2013). Novel avian-origin influenza A (H7N9) virus attaches to epithelium in both upper and lower respiratory tract of humans. American Journal of Pathology, 183 (4), 1137-1143. doi: 10.1016/j.ajpath.2013.06.011

Influenza A virus induced bacterial otitis media is independent of virus tropism for α2,6-linked sialic acid

Short, Kirsty R., Habets, Marrit N., Payne, Jean., Reading, Patrick C., Diavatopoulos, Dimitri A. and Wijburg, Odilia L. (2013). Influenza A virus induced bacterial otitis media is independent of virus tropism for α2,6-linked sialic acid. Virology Journal, 10 (1) 128. doi: 10.1186/1743-422X-10-128

Influenza-induced inflammation drives pneumococcal otitis media

Short, Kirsty R., Reading, Patrick C., Brown, Lorena E., Pedersen, John, Gilbertson, Brad, Job, Emma R., Edenborough, Kathryn M., Habets, Marrit N., Zomer, Aldert, Hermans, Peter W. M., Diavatopoulos, Dimitri A. and Wijburg, Odilia L. (2013). Influenza-induced inflammation drives pneumococcal otitis media. Infection and Immunity, 81 (3), 645-652. doi: 10.1128/IAI.01278-12

The fate of influenza A virus after infection of human macrophages and dendritic cells

Short, Kirsty R., Brooks, Andrew G., Reading, Patrick C. and Londrigan, Sarah L. (2012). The fate of influenza A virus after infection of human macrophages and dendritic cells. Journal of General Virology, 93 (PART 11), 2315-2325. doi: 10.1099/vir.0.045021-0

Interactions between Streptococcus pneumoniae and influenza virus: a mutually beneficial relationship?

Short, Kirsty R., Habets, Marrit N., Hermans, Peter W. M. and Diavatopoulos, Dimitri A. (2012). Interactions between Streptococcus pneumoniae and influenza virus: a mutually beneficial relationship?. Future Microbiology, 7 (5), 609-624. doi: 10.2217/fmb.12.29

NLRC4 inflammasomes in dendritic cells regulate noncognate effector function by memory CD8+ T cells

Kupz, Andreas, Guarda, Greta, Gebhardt, Thomas, Sander, Leif E., Short, Kirsty R., Diavatopoulos, Dimitri A., Wijburg, Odilia L. C., Cao, Hanwei, Waithman, Jason C., Chen, Weisan, Fernandez-Ruiz, Daniel, Whitney, Paul G., Heath, William R., Curtiss, Roy, Tschopp, Jürg, Strugnell, Richard A. and Bedoui, Sammy (2012). NLRC4 inflammasomes in dendritic cells regulate noncognate effector function by memory CD8+ T cells. Nature Immunology, 13 (2), 162-169. doi: 10.1038/ni.2195

Increased nasopharyngeal bacterial titers and local inflammation facilitate transmission of Streptococcus pneumoniae

Short, Kirsty R., Reading, Patrick C., Wang, Nancy, Diavatopoulos, Dimitri A. and Wijburg, Odilia L. (2012). Increased nasopharyngeal bacterial titers and local inflammation facilitate transmission of Streptococcus pneumoniae. mBio, 3 (5) e00255-12. doi: 10.1128/mBio.00255-12

Influenza virus induces bacterial and nonbacterial otitis media

Short, Kirsty R., Diavatopoulos, Dimitri A., Thornton, Ruth, Pedersen, John, Strugnell, Richard A., Wise, Andrew K., Reading, Patrick C. and Wijburg, Odilia L. (2011). Influenza virus induces bacterial and nonbacterial otitis media. Journal of Infectious Diseases, 204 (12), 1857-1865. doi: 10.1093/infdis/jir618

Ancient antimicrobial peptides kill antibiotic-resistant pathogens: Australian mammals provide new options

Wang, Jianghui, Wong, Emily S. W., Whitely, Jane C., Li, Jian, Stringer, Jessica M., Short, Kirsty R., Renfree, Marilyn B., Belov, Katherine and Cocks, Benjamin G. (2011). Ancient antimicrobial peptides kill antibiotic-resistant pathogens: Australian mammals provide new options. PLoS One, 6 (8) e24030, e24030.1-e24030.8. doi: 10.1371/journal.pone.0024030

MrkH, a novel c-di-GMP-dependent transcriptional activator, controls Klebsiella pneumoniae biofilm formation by regulating type 3 fimbriae expression

Wilksch, Jonathan J., Yang, Ji, Clements, Abigail, Gabbe, Jacinta L., Short, Kirsty R., Cao, Hanwei, Cavaliere, Rosalia, James, Catherine E., Whitchurch, Cynthia B., Schembri, Mark A., Chuah, Mary L. C., Liang, Zhao-Xun, Wijburg, Odilia L., Jenney, Adam W., Lithgow, Trevor and Strugnell, Richard A. (2011). MrkH, a novel c-di-GMP-dependent transcriptional activator, controls Klebsiella pneumoniae biofilm formation by regulating type 3 fimbriae expression. PloS Pathogens, 7 (8) e1002204, e1002204. doi: 10.1371/journal.ppat.1002204

Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development

Renfree, Marilyn B., Papenfuss, Anthony T., Deakin, Janine E., Lindsay, James, Heider, Thomas, Belov, Katherine, Rens, Willem, Waters, Paul D., Pharo, Elizabeth A., Shaw, Geoff, Wong, Emily S. W., Lefevre, Christopher M., Nicholas, Kevin R., Kuroki, Yoko, Wakefield, Matthew J., Zenger, Kyall R., Wang, Chenwei, Ferguson-Smith, Malcolm, Nicholas, Frank W., Hickford, Danielle, Yu, Hongshi, Short, Kirsty R., Siddle, Hannah V., Frankenberg, Stephen R., Chew, Keng Yih, Menzies, Brandon R., Stringer, Jessica M., Suzuki, Shunsuke, Hore, Timothy A. ... Worley, Kim C. (2011). Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development. Genome Biology, 12 (8) R81, R81.1-R81.25. doi: 10.1186/gb-2011-12-8-r81

Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development (vol 12, pg R81, 2011)

Renfree, MB, Papenfuss, AT, Deakin, JE, Lindsay, J, Heider, T, Belov, K, Rens, W, Waters, PD, Pharo, EA, Shaw, G, Wong, ESW, Lefevre, CM, Nicholas, KR, Kuroki, Y, Wakefield, MJ, Zenger, KR, Wang, CW, Ferguson-Smith, M, Nicholas, FW, Hickford, D, Yu, HS, Short, KR, Siddle, HV, Frankenberg, SR, Chew, KY, Menzies, BR, Stringer, JM, Suzuki, S, Hore, TA ... Worley, KC (2011). Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development (vol 12, pg R81, 2011). Genome Biology, 12 (12) 414. doi: 10.1186/gb-2011-12-12-414

Using bioluminescent imaging to investigate synergism between Streptococcus pneumoniae and influenza A virus in infant mice

Short, Kirsty R., Diavatopoulos, Dimitri A., Reading, Patrick C., Brown, Lorena E., Rogers, Kelly L., Strugnell, Richard A. and Wijburg, Odilia L C (2011). Using bioluminescent imaging to investigate synergism between Streptococcus pneumoniae and influenza A virus in infant mice. Journal of Visualized Experiments (50) e2357. doi: 10.3791/2357

Influenza A virus facilitates Streptococcus pneumoniae transmission and disease

Diavatopoulos, Dimitri A., Short, Kirsty R., Price, John T., Wilksch, Jonathan J., Brown, Lorena E., Briles, David E., Strugnell, Richard A. and Wijburg, Odilia L. (2010). Influenza A virus facilitates Streptococcus pneumoniae transmission and disease. FASEB Journal, 24 (6), 1789-1798. doi: 10.1096/fj.09-146779

Identification and Characterisation of Pseudomonas 16S Ribosomal DNA from Ileal Biopsies of Children with Crohn's Disease

Wagner, Josef, Short, Kirsty, Catto-Smith, Anthony G., Cameron, Don J. S., Bishop, Ruth F. and Kirkwood, Carl D. (2008). Identification and Characterisation of Pseudomonas 16S Ribosomal DNA from Ileal Biopsies of Children with Crohn's Disease. PLoS ONE, 3 (10) e0003578, e3578. doi: 10.1371/journal.pone.0003578

Deep single-cell, proteogenomic insights from SARS-CoV-2 infected lung tissues

Kulasinghe, Arutha, Tan, Chin Wee, Liu, Ning, Monkman, James, Killingbeck, Emily, Kim, Youngmi, Pan, Liuliu, Blick, Tony, Bhuva, Dharmesh, Feher, Kristen, Leon, Michael, Gregory, Mark, Short, Kirsty, Guimaraes, Fernando, Rhodes, Michael, Belz, Gabrielle and Davis, Melissa (2022). Deep single-cell, proteogenomic insights from SARS-CoV-2 infected lung tissues. SITC 37th Annual Meeting (SITC 2022), Boston, MA USA, 8-12 November 2022. London, United Kingdom: BMJ Publishing Group. doi: 10.1136/jitc-2022-sitc2022.0923

Emulation of epidemics via Bluetooth-based virtual safe virus spread: experimental setup, software, and data

Asanjarani, Azam, Shausan, Aminath, Chew, Keng, Graham, Thomas, Henderson, Shane G., Jansen, Hermanus M., Short, Kirsty R., Taylor, Peter G., Vuorinen, Aapeli, Yadav, Yuvraj, Ziedins, Ilze and Nazarathy, Yoni (2022). Emulation of epidemics via Bluetooth-based virtual safe virus spread: experimental setup, software, and data.

Avian endothelial cells - RNAseq data (Public)

Karawita, Anjana, Short, Kirsty, Karawita, Anjana Chamal and Bruxner, Tim (2022). Avian endothelial cells - RNAseq data (Public). The University of Queensland. (Dataset) doi: 10.48610/58a568b

Short-read next generation DNA sequencing of Black swan AKBS03

Karawita, Anjana, Short, Kirsty, Karawita, Anjana Chamal and Bruxner, Tim (2022). Short-read next generation DNA sequencing of Black swan AKBS03. The University of Queensland. (Dataset) doi: 10.48610/f6ba161

Mute swan ISOseq data

Karawita, Anjana, Short, Kirsty and Karawita, Anjana Chamal (2021). Mute swan ISOseq data. The University of Queensland. (Dataset) doi: 10.48610/afb4f31